CSPI02G17000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G17000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Nucleic acid-binding, OB-fold-like protein
Location	Chr2 : 16247047 .. 16251925 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGGTTGCAGTTGTTCCCTAAAAAAATAATTTTCCCATTATTTTAAACGATAAAAGTTAAAACGACTTGAATCTTTTGCCAATTTTATTTTTTGAAACCCCGAGTTACAGCATCGAAGGTTAAATTTACGGGTCAGACACGTGGTCGATCACGATTAAAGTCCTCTGGCGATCAATAATCGACGGTTGATATTTTCACAGCAACTTTATTTCTTTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGACTTCCCTTTTCCCCCTTCGTCTTTGCCTCCGTCCACCACTGGTAAAAGGTGATTTCTAAACCCTAAAATTTCAGCTTCGTTTATTCTTATACCTTTTATTTTCTAATTTGTATTTCTCCTCGCTTCTCTAATTTTATGGGCACTCAGGTTGCGATTTTGTGGTAATCGTTTGTTTTGCATATTCTTTTAATGATTCTCATTTAATACTAATTCACGACATTCGAGTGTGAAATTTTATATAGAGAATGATGAGAGGTACTTGCTGAAAATCAAATTCGATGACTTAATACTATATTTTGTTTTTAGGTTTAAGGATGCTAATAAGCATCGTTTTAGTACGCTCCATTTCCTTAAGTCCCACATTAAGCCTCTAGTTGTTTGATTATCTTTCATTTGATTCACGAAAATTTTCGGAAAGACAAGTTATGAAAAACTATTTATGTCGTTGGATGTGATAATTAGCATCGAGATTAGTCGGAGGTGCTCGGAGATTTGACGATATTCAAAATATAAATAATAATTTGGCACTTTGCTTTTCAATCTTATTGTGTGTTTCGTTGAATCGACAATTTGAATTTTTTGTTCATTATCTATTTATTTTCTGTCAGTCATGAATATTTTATCAATCCCTGGCGTTCCATCCACCTCGATGATATACTGATAGCGTGTGTGTGTGCGTTTTTAAAAAAATCACAACTTCATTCTGTTATCTAACTGTATTCTTATAGACTACATGTTGTCTAACTGTTTTCTTATTGTTTGTTATTGGCACAATTAGGGATTAGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGGTAAATTTCCACAATATTTGAGGAGCCTGCACCATTTGTGTTTATTTGTATCTTGTATGAAGCATGCGAACTTTCTTCTTTATGCTTACTTCTGTACATAATACTAAATATTTGTCGTTAGTTAGGTTCTTTATATCCACCTGCTGCTGGTGCATGCAAGAGTTTTCATAACTGATTTGTCTCACCCCCTGTCCTCAATGTATTTACATATCTCACTGTAAAAAGTTGTAAGCTGTTATGATATATCAACTTCCTACTAGCAATATTTCATAAAGGTTGGAGACATTTTATTGTTTTAAAATTATTCGTGGACCTTTCCTTTTCAGACAAGAAACTAGACTTTATCTAAATGCTGGCACATATGGAGGCTGAGATACTAAGCCAATTGAAATAAGTCATCCATACAAATATTACCATCTAAAGAACTGAGTGCCTACTTTGTTTGTTATATATATTAGTTAGCGTAATGGCTTATAATAATAGTTGGATAATCACTTCAATAGTTCTGTTACATAGCGATGGATTAATGTATATGTCTCCCATTTGAAATAATAAGCTCTTTGCTGAGTCTTGAGAATAATAGATTTTGGAGGAATCATTTGTATTGCTTCGATTATGATCTTATTAGGTGTTGAATGATATAATATTTATTTTTCCTTGCATCTATCAAATTAAGTTTTTGGGTCAATTGGTGATTTAATATCGGAGCAGGTGATCTAGGACTACAAGGAGGTTTTATTTCCTTCCTAACTAAAATTGGTTTCTACTTGTTGAGTCTTTTTCATATATCAAGCCCACAAGTGAGGGGGAGTTGAATGATATAATATTAAATTTGGACTCACCCATCAGCTTAAGTTTTTGGGTCAGTTGGTGATTTAAGATTAGGGAAATTTTGGTTTTGGAAGATCCATCAATTGTAGTAAATGTTATTTCTATCTTGACTTATTTTATCTGTTGGTTTCATATGTATATTTTCATGTTAGGATCTGATTAGGTTGTTGCATGTCACTGAGTGCGCACTATTGTCAATACTGTATGTTAATCTAGGAAGCATGCACACGTCCAAAATGATGCAAGTGTCAGTGCCGGACATGTTGCTTTTTATTTATTATTTTCCAATTTTCGACACGTGAAGACACACAAAGACCCTGCATCGGACACACATAGACACATAAGAAACCCAAACCTTTCAAACCAGTAGGTGGCGGAGAGATGGTGGTCGGCATTGGCATGTTTGAGATCGAGCGGTGAAGGGAGAGCCTTATTACATCCATTTCATGTGATTGGCTATGCGTGACTGTGTGGGAGAAGGGGGAAGAGCAGAATCGGGGGAGAAAGTGGTTGCGTGGGAGAAGAGGAGAGCAGTGAAGGATAGAAAGGGAAATATTAGGATTAGGGTTTTAAATTTTAAATGGGCTTTGGGGCCCTTTTTAAAACTTAAATGGGCTTTTCCATTCCAAGTCGTGGGTTTATTTCTCATGAACAGGTTTTTATTTCATTTTTTTTCCTTCTTTTTTTAAAAAATTAATGCTCTTGTATTTTTCTTTTGTAGTCTTTTAGTAAGTCAGTTATTTTTAATAATCAATAACACTTGTATTATATATATTATGTGTGTGTGTATGTTTGTATGTATATATAGATAGATATACATACATATATGGGTGTGTATTAAAAAAACAGTGTGTGGGTGTCGTGTCCATTTTTAGAAATTGCTGCGTCGCCATGTTGTGTCGATATCTCATGTCCGTGCTTCATAGATGTTAATTGAATTCCTAAGAACATGTAGATGCTTTAGTAATTTTGGAGAAACTGTCAGCGCCTAGGACTCTAGACAGCTCCACTTAGAAATATACGTTGTGTGATTGTTATGTTTGTTACAGTGTCTATCAAGTGCATCTTAACTAACCCCTGTTTCAATTACGCTTATTGTCTATTAGTTATATTGACCAACCTTATCATTTTTTCATATATAGATTCCTTCCAATTATTCACTTGCCATGTTCTAAAACTTATTTTACGATAGTATCCATAACCTCATTTAAATTGTATTAGTTCAGTGGTTTCTCATCATGCGTCAATCCTTTTCATTTTCTATTACACTTTTTTCCCCATTTGTGCCAAAAAAACATCATATTAATAATTATTTTCCTAGAGTTTTCCACGTGCAATGTTCTATAACTTGTTTTACTATAATATTTATTACCTTATTTAAATTGTATTAAATTATGTTTTTTTTAATCATGTGTTAATTTTTCATTTTCATTTTCTGTCACTTTTTTTGACATTACATTTATTATCCTTCGAGTAGAAGATTGCTATACTTGGTTATTACCAAGCTATCAAAAATAAAGAAGAATGAGAATAAAAGAAGCTGTTGTTGTGGTTTTGTTTCTTTCCTCCTGAACAAGAATAGATAAAAGTTGTGAATTGTTGAATGGAAAAGTGGTTAATAACACCATAACGTTGTAGTTCTAGTTGCAAAGAGAACTATTCCTCTTACATAGGCAGGTGAAAGAGGTGGACAAGAATGGAATTTTTTTCAAGCTAGGTTCATGGTATGGCAGAGGAGAATGAGTGGTCCTGGAATGGGATAGTTGTATATAGATGGTTTTTCTCTTAGATCAAACTCATTGTTGTTAAATATATCCGTTTTTAACTTTTACATATACCCTATCTTTGTTCATGAGATTAGTAAATTACCTCATCTTGAACTCACTTTAAAGGTCACGAAAATTTTATTAGTTCATTGTACACGATTTTAGCTCCAAGTGATCCCTATACTGTTTGATTAACCAGTCCTTGGAGTTGAATGTGTTGGTGGACATATTTTAAATGGCATAAAGTTTCCATAACTCATTTACTCGTATGTCTTTGATATCTTTCATGTAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGAATTTTTGTGATCGTGTTCATTTTCCTGCTGCAACCTGACCAAAAAATAAAACAATCAAGCTTCAAAATCACAAGTTTCCGTTGGGGTACTGAAAATGCTCGCAAAAGTTCATTATTAGGGAATAGAATTCTGGAGGCCAGTAGTACGAAAGTTGATTTTCATTCCTGCAGCCTATTGGTGGAACCGTTATTGGAATCTACAAACAGATGGGTAATGGCTTAGTTGATGGAAGAAGGTTTAGCTGGCTTTTTTATTCTTCTTTTGTCTAGTATTTTATTGCTTGTGAACACGGTTTATGATGTTCTTGAACTAATCATCAGAAGACAACACTGGCCTTGCTCCGTTAAAACTTATGTTTATTTTTATAATTCAAGGTCCATGCCAACTTAACTGCTTTGGAGTGTCGAATCTAATGCTCAAATGATTTTGATTACCTAAAAATGTGTGGATTTCATGTGCAATAGTTTAGGGAATAACTGATCTAGTGTCAAATTGAGAAATTTGGAATCT

mRNA sequence

ATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Coding sequence (CDS)

ATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Homology

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BLAST of CSPI02G17000 vs. Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-44
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQARQM---RIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 128
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 129 NLSLIEYELVNV 135
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

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BLAST of CSPI02G17000 vs. TrEMBL
Match: A0A0A0LNA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348250 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.4e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CSPI02G17000 vs. TrEMBL
Match: A0A151TGI4_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012448 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.6e-67
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CSPI02G17000 vs. TrEMBL
Match: A0A151TGI6_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012449 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-66
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGM+IFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

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BLAST of CSPI02G17000 vs. TrEMBL
Match: A0A061E750_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_010354 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.2e-66
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESK GLRKPVFTKVDQLRPGTSGHTLTVKVV+TKMVLQKGR DGPQ RQMRIAECLVG
Sbjct: 1   MAESKSGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRADGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARN+QVDLMKEG T+TLRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNEQVDLMKEGTTVTLRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CSPI02G17000 vs. TrEMBL
Match: C6T2Y3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G030800 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-65
Identity = 125/137 (91.24%), Postives = 133/137 (97.08%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVV+ KMV+QKGR DGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVDAKMVMQKGRSDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARNDQVD+MKEGAT+TLRNAKIDMFKGSMRLA D+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATVTLRNAKIDMFKGSMRLAADKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CSPI02G17000 vs. TAIR10
Match: AT1G23750.1 (AT1G23750.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 234.2 bits (596), Expect = 4.9e-62
Identity = 113/137 (82.48%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 1   MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLV 60
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 61  GDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVK 120
           GDETG+I+FTARNDQVDLMKEG+T+TLRNAKIDM+KGSMRLAVD+WGRVEVTEPA+F VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 121 EDNNLSLIEYELVNVVE 137
           ED N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

[Close]

BLAST of CSPI02G17000 vs. TAIR10
Match: AT1G10590.3 (AT1G10590.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 218.4 bits (555), Expect = 2.8e-57
Identity = 109/137 (79.56%), Postives = 125/137 (91.24%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKG--RPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+G  RP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPANFT 120
           VGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP + T
Sbjct: 75  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 134

Query: 121 VKEDNNLSLIEYELVNV 135
           VK+DNNLSLIEYELV+V
Sbjct: 135 VKDDNNLSLIEYELVSV 151

[Close]

BLAST of CSPI02G17000 vs. TAIR10
Match: AT2G33845.1 (AT2G33845.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-50
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 1


Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMII 68
           +KPVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 69  FTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLI 128
           FTARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA+ TVKEDNNLSL+
Sbjct: 113 FTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLV 172

Query: 129 EYELVNVVEE 138
           EYELVNVVEE
Sbjct: 173 EYELVNVVEE 182

[Close]

BLAST of CSPI02G17000 vs. TAIR10
Match: AT4G28440.1 (AT4G28440.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-45
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQARQM---RIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 128
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 129 NLSLIEYELVNV 135
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CSPI02G17000 vs. TAIR10
Match: AT1G03810.1 (AT1G03810.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-41
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 1


Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNT---KMVLQKGRPDGPQARQMRIAECLVGDETGM 68
           RKPVF KVDQL+PGTSGHTL VKV+ +   K  ++K           RIAECL+GD+TG 
Sbjct: 15  RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTGC 74

Query: 69  IIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLS 128
           I+FTARNDQVDLMK GAT+ LRNAKID+FK +MR+AVDRWGR+E+T P +F V   NNLS
Sbjct: 75  ILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLS 134

Query: 129 LIEYELV 133
           L+EYE++
Sbjct: 135 LVEYEVI 141

[Close]

BLAST of CSPI02G17000 vs. NCBI nr
Match: gi|449450468|ref|XP_004142984.1| (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CSPI02G17000 vs. NCBI nr
Match: gi|1012354977|gb|KYP66164.1| (Uncharacterized protein At4g28440 family [Cajanus cajan])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CSPI02G17000 vs. NCBI nr
Match: gi|1012354978|gb|KYP66165.1| (Uncharacterized protein At4g28440 family [Cajanus cajan])

HSP 1 Score: 260.4 bits (664), Expect = 1.8e-66
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGM+IFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CSPI02G17000 vs. NCBI nr
Match: gi|590694557|ref|XP_007044641.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 258.1 bits (658), Expect = 8.9e-66
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESK GLRKPVFTKVDQLRPGTSGHTLTVKVV+TKMVLQKGR DGPQ RQMRIAECLVG
Sbjct: 1   MAESKSGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRADGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARN+QVDLMKEG T+TLRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNEQVDLMKEGTTVTLRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVEE 138
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CSPI02G17000 vs. NCBI nr
Match: gi|1012099909|ref|XP_015957084.1| (PREDICTED: uncharacterized protein At4g28440 [Arachis duranensis])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 126/136 (92.65%), Postives = 133/136 (97.79%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVV+TK+V+QKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKLVMQKGRPDGPQPRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120
           DETGMIIFTARNDQVD MKEG+T+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDEMKEGSTVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 DNNLSLIEYELVNVVE 137
           DNNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

The following BLAST results are available for this feature:

BLAST of CSPI02G17000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4844_ARATH	2.5e-44	66.67	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1	[more]

BLAST of CSPI02G17000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA1_CUCSA	8.4e-71	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348250 PE=4 SV=1	[more]
A0A151TGI4_CAJCA	9.6e-67	93.43	Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012448 PE=4 SV=...	[more]
A0A151TGI6_CAJCA	1.3e-66	92.70	Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012449 PE=4 SV=...	[more]
A0A061E750_THECC	6.2e-66	93.43	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_010354 PE=4...	[more]
C6T2Y3_SOYBN	3.1e-65	91.24	Uncharacterized protein OS=Glycine max GN=GLYMA_01G030800 PE=2 SV=1	[more]

BLAST of CSPI02G17000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23750.1	4.9e-62	82.48	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	2.8e-57	79.56	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	1.1e-50	75.38	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	1.4e-45	66.67	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	2.1e-41	62.99	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CSPI02G17000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450468\|ref\|XP_004142984.1\|	1.2e-70	100.00	PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus]	[more]
gi\|1012354977\|gb\|KYP66164.1\|	1.4e-66	93.43	Uncharacterized protein At4g28440 family [Cajanus cajan]	[more]
gi\|1012354978\|gb\|KYP66165.1\|	1.8e-66	92.70	Uncharacterized protein At4g28440 family [Cajanus cajan]	[more]
gi\|590694557\|ref\|XP_007044641.1\|	8.9e-66	93.43	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|1012099909\|ref\|XP_015957084.1\|	2.0e-65	92.65	PREDICTED: uncharacterized protein At4g28440 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G17000.1	CSPI02G17000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 12..132 score: 3.3
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 6..134 score: 7.14
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 1..137 score: 4.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G17000	Cla000797	Watermelon (97103) v1	cpiwmB105
CSPI02G17000	Csa2G348250	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G17000	MELO3C010663	Melon (DHL92) v3.5.1	cpimeB118
CSPI02G17000	ClCG08G018040	Watermelon (Charleston Gray)	cpiwcgB172
CSPI02G17000	Lsi08G016820	Bottle gourd (USVL1VR-Ls)	cpilsiB141
CSPI02G17000	MELO3C010663.2	Melon (DHL92) v3.6.1	cpimedB114
CSPI02G17000	CsaV3_2G024610	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G17000	Cla97C08G161810	Watermelon (97103) v2	cpiwmbB166
CSPI02G17000	Bhi04G000524	Wax gourd	cpiwgoB155
CSPI02G17000	Cucsa.394190	Cucumber (Gy14) v1	cgycpiB578
CSPI02G17000	CmaCh05G000100	Cucurbita maxima (Rimu)	cmacpiB793
CSPI02G17000	CmaCh12G000060	Cucurbita maxima (Rimu)	cmacpiB167
CSPI02G17000	CmoCh12G000060	Cucurbita moschata (Rifu)	cmocpiB152
CSPI02G17000	CmoCh05G000110	Cucurbita moschata (Rifu)	cmocpiB782
CSPI02G17000	Cp4.1LG07g00100	Cucurbita pepo (Zucchini)	cpecpiB814
CSPI02G17000	Cp4.1LG11g00570	Cucurbita pepo (Zucchini)	cpecpiB092
CSPI02G17000	CsGy2G016990	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G17000	Carg20514	Silver-seed gourd	carcpiB0656
CSPI02G17000	Carg21808	Silver-seed gourd	carcpiB0537

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None