CmoCh05G000110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G000110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleic acid-binding, OB-fold-like protein
Location	Cmo_Chr05 : 43784 .. 47420 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACCAACTTTATTTCTTTCCTCCAAGCCAGACTTTGACGGCTACGTTTCTGAAATCAGATCGGCTTCCTTTTTCTCCCTTCGTCTTTGCCTCTACCGCCCGTAAAAGGTGATTTCTAAACCCTAAAATTTCAGTTCCAGTTATTCTTGTACCTATCCTTCTTACATTTTATATTTCTCTTTGCTTCTGAACTTTTTTGGCATTCAGGTTGTGATTTTGTGGTACTTGTTCGGTTTGCATGGTCTTTTTATGATTCCTATTTATGACATTCAAGTCTGAAATTTTATATATAAAATGCGATGAGAAATACTTGCAGAACATTAAGTTTGTTGATTTATAACTAATTTTCGTTTTTCATTGAGGCATTAAGCATGCTTCGAAACATTATTTGAGCACGCGCCATTTCTTCAAGTTCCACATTGGGCCTCCTGTAATTTGATACACCTTCATTTGATTCACGAAATTTTTCGGGACACAAAAGTTATGAAAAACTGTGTATCCGTGGTTTTAATTATTAGCGTTTGAGTTTAAGCGATTAATAGCTTTTAAATGCTCAGAAGCGATTAATGGTGTTGTCATTGGAGTGCATGTTTACGGACGATTAGTTGGTGGGATGAAAATTTAGATGTTTGGAAGTGAACGGAGAAAATGAGATTGGCGGTAAATTAAGAACAAGAACAAACGACATGTTATTTGAGAAAGCTATGCCCTAAATCTTTTGGTTGGGTGTAAGAACAGTAATGCTCTGGTTAGAAAGATAAATGTTTCTCTAGTCACCTTGGTTCATTTTATTATAAACTTCCATATTATCTTTAATTTTTCAGATACAGAGGTAGAAGCTTGAATAATCAAGCAGCCATTAAAATCGTGTCAAAACTTGATGCCAATTGCCAACAATTTAACATTTTTTCTTTAACCACTGTAGGTTGACCTACTAGTCAAATGTAAGCTTAGAGGGAAAGTGTGCATAGCCACCTGCATAAGACTTACGGTCCTACAGTGTCTTTGAAAACCAAATGCAATAGAGTAAGACAATTGTCTCAAGATTAGTCGAAATGATGGGAGATTTTCAAATATTTAAAATATTAATAAGAAAAATAATTTTCCACTTTGCTTTTCGATCTTATCCTGTTTCTTTGAAGGGATAATTTTAATTATTTCACCCATTTTTTGTCATGGATATTTAATCAATCCGAGGCTTTCATCTACCTTGTTGATATGCTAGCACTCTGGGCCTTTTTTTATTCACTACATTTTATTGTCTAACTGTTTTCTTATTGTTTATATATTGGTATGAATAGGCATTTGTATTCGCGGAAATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAACGATCAAGGTAAATTTCAACGATATGTGAGCATGCATCATTTGTGTACTTGTATCTTGTATGAAGCATGCCAACTTTCTTATTTGTGCTTTCATTCTGTACATATTACTAAACATTGGACGTTAATTGGTTCTTGATATCCACATGCAACAGAAAAGATGCAGGTAAGAGTTTTCATAACTGATTTATATGGGTGTCTCACTCGTCCACAATGTATTTACACATTTCAATGTGAAAGGTATAGGTTGTTTTGATATATCAACTTCCTATTATTAAAGATTTCATAAATGTTTGTGGCTTTATGTTGTCTTAAAATTAACGAGGAACCTTTTTCACATACAAGGAACTATATTTTTACTAAATGCCGGTACATACAGAGGTTGAAATAAAACAGCAATTGAAATAAATCATCCACACAAAATTGCCTTTTAAAGAACTATAACTTCATACTTTTTCGGTTATATATATGGTGTAATGTCTAATAGTTGGATAATCACTTCAATAGCTCAATTGCATGTCGGATGTTGGATTAATGTAAAGTCCATACATTTGTAAGGATAAGCTCTTTGCCGAATCTTAAGAATAATAGATTTCGAAGGAACCTTCTGTTTTTTTTTTTTTTCTTTTCTTTTTAATGATTTTATGAGGGAAATTAGTGCTATAAGGTCCACAAATGTTTGTTAATGGTGTTCCTTCCACAGCTTCTTTCATCTCTTGATTGCATTTGCACATTTTTTATATTTTGATCTGATTATGCATGCCAGTGAGTGGTCACCGTTCACAGTACTGTATGTTAATTGTATTTTTTAATCACATATGGATGCTTTAGTGATCAAATGGATCTTAGGCTATTTTATTGTACGAGGGAGTAAGAAAATGAGCTGCTGTATTTGTTGTTTTTTTCACTCCTGAAAAAGAAAAGATAGAAGTGGTGAATCATTGAATGGAAAACTGGTTAATAACACCATAACTTTGTAGTTCTATTGTTGCAAAGAAAACTATTCCTCCTCCTGCATTGGCAGATGAAAGAGGTGGACAAGAATGGTATTTTATGCAAGGTAGGTTCATGGTTTGACAGAGGGGAACAGGTGGTGCAGGAATGGGATAGTTTTATGTTGTAGATGAAATTTTTCTTCGGTCGAACTCTTGTTGTTAAAATATATGCCTGTGATTTGACTCAGCCTATCTTTGTGTAGCTTACCTTTGTTCATGAGATTAGTAAATAACGTCATCTAGGATTCCCTTTAAGCAGTCGGGACAATTTTGTAAGTTATGTACCTTGTGATTTTAATTCCAACTGACCCCTATCGTGTTAGTTAGCCAATCCTTAGAGAAGATTTTATATTAATATTGAATCTGCCCTCGTAGCCACAGTTCTATTTGCTTATTTGAATGAGTATTTCTTTTGGCGGACATATTTAAATGGCATTAAAGTTTCCGTAGCTCATTTACTCGCATGTTGTTGCTTTCTTCCGTGTAGTGGACTTGATGAAAGAAGGTGCTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGAATTTTGTGATCGTGTTCATTTTCCTGCTGCAACATGACCATAAAATAAAACAATCAAGCTACAAACTCACGAGTTTCCGTTGGGGTGTCGAAAATGCTCGCACAAGTTCATTATTAGGGAATAGAATTATGGAAGCCAGTACGAAAGTTGATTTCCATCCCTGCAGCCAATTGGTGGAACCGTTGGGATCTACAAACAGGTGGGTGATGGCTCAGTTGATGGAAGAAGGCTTGGCTGGCTTTTCTATTTTTCGTTTGTCTAGTATTTTATTGCTTATGAAAACACTTTACGATATCGTGAACTATCATCAGATGACAAGACTAGCACCTTGTTCCGTTAAAGCTTATGTTAATTCAAGGTCGATGCCAACTTGACTGCCTTCGAGTGTCAAATCTTATTCTTAAATGATTGATTACTCCCAAAAAGTGAGGA

mRNA sequence

CATACCAACTTTATTTCTTTCCTCCAAGCCAGACTTTGACGGCTACGTTTCTGAAATCAGATCGGCTTCCTTTTTCTCCCTTCGTCTTTGCCTCTACCGCCCGTAAAAGGTTGACCTACTAGTCAAATGTAAGCTTAGAGGGAAAGTGTGCATAGCCACCTGCATAAGACTTACGGTCCTACAGTGTCTTTGAAAACCAAATGCAATAGAGCATTTGTATTCGCGGAAATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAACGATCAAGAAAAGATGCAGGTAAGAGTTTTCATAACTGATTTATATGGGTGTCTCACTCGTCCACAATGTATTTACACATTTCAATGTGAAAGTTCTATTGTTGCAAAGAAAACTATTCCTCCTCCTGCATTGGCAGATGAAAGAGGTGGACAAGAATGGTATTTTATGCAAGTGGACTTGATGAAAGAAGGTGCTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGAATTTTGTGATCGTGTTCATTTTCCTGCTGCAACATGACCATAAAATAAAACAATCAAGCTACAAACTCACGAGTTTCCGTTGGGGTGTCGAAAATGCTCGCACAAGTTCATTATTAGGGAATAGAATTATGGAAGCCAGTACGAAAGTTGATTTCCATCCCTGCAGCCAATTGGTGGAACCGTTGGGATCTACAAACAGGTGGGTGATGGCTCAGTTGATGGAAGAAGGCTTGGCTGGCTTTTCTATTTTTCGTTTGTCTAGTATTTTATTGCTTATGAAAACACTTTACGATATCGTGAACTATCATCAGATGACAAGACTAGCACCTTGTTCCGTTAAAGCTTATGTTAATTCAAGGTCGATGCCAACTTGACTGCCTTCGAGTGTCAAATCTTATTCTTAAATGATTGATTACTCCCAAAAAGTGAGGA

Coding sequence (CDS)

ATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAACGATCAAGAAAAGATGCAGGTAAGAGTTTTCATAACTGATTTATATGGGTGTCTCACTCGTCCACAATGTATTTACACATTTCAATGTGAAAGTTCTATTGTTGCAAAGAAAACTATTCCTCCTCCTGCATTGGCAGATGAAAGAGGTGGACAAGAATGGTATTTTATGCAAGTGGACTTGATGAAAGAAGGTGCTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGA

Homology

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BLAST of CmoCh05G000110 vs. Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.1e-21
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 129 QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVN 188
           QVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDNNLSL+EYEL+N
Sbjct: 89  QVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELIN 148

Query: 189 V 190
           V
Sbjct: 149 V 149

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BLAST of CmoCh05G000110 vs. TrEMBL
Match: A0A0B2NT96_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000024 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.5e-59
Identity = 130/192 (67.71%), Postives = 144/192 (75.00%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SK GLRKPVFTKVDQL PGTSGHTL VKVVNAKMV+Q+GR DGPQ+RQMRIAECLVG
Sbjct: 1   MADSKSGLRKPVFTKVDQLCPGTSGHTLTVKVVNAKMVMQRGRSDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMII+TARNDQ+    ++       CL            S+I A  T    + A  R
Sbjct: 61  DETGMIIYTARNDQDYAASQLSSQGRRFCL-----------RSNIFAGSTWNSMSSAKAR 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
           G  +     VD M EGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKEDNNLS
Sbjct: 121 G--KVGTNCVDTMTEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKEDNNLS 179

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVV E
Sbjct: 181 LIEYELVNVVAE 179

[Close]

BLAST of CmoCh05G000110 vs. TrEMBL
Match: Q9SGZ2_ARATH (F20B24.1 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.9e-50
Identity = 114/192 (59.38%), Postives = 137/192 (71.35%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKG--RPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+G  RP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALAD 120
           VGDETG+IIFTARNDQ + ++  F+   + C       Y F  ++ I             
Sbjct: 75  VGDETGIIIFTARNDQGE-RINAFVM-YFSCT-----FYRFMTDAII------------- 134

Query: 121 ERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPAAFTVKEDN 180
                  +F  VD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP   TVK+DN
Sbjct: 135 -------HFYPVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 179

Query: 181 NLSLIEYELVNV 190
           NLSLIEYELV+V
Sbjct: 195 NLSLIEYELVSV 179

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BLAST of CmoCh05G000110 vs. TrEMBL
Match: W9RCR1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027775 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.4e-46
Identity = 110/192 (57.29%), Postives = 123/192 (64.06%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVV+ KMVLQKGR DGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRADGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARNDQ+   V  F  ++ G +   +       E S V  +           
Sbjct: 61  DETGMIIFTARNDQDMPGVMNF-DEMPGVMNFDEMPVDLVKEGSTVILRN---------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   ++D+ K    +                 VD+WGRVE+TEPA FTVKEDNNLS
Sbjct: 121 -------AKIDMFKGSMRLA----------------VDKWGRVEITEPADFTVKEDNNLS 158

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 158

[Close]

BLAST of CmoCh05G000110 vs. TrEMBL
Match: A0A103XTZ1_CYNCS (Nucleic acid-binding, OB-fold OS=Cynara cardunculus var. scolymus GN=Ccrd_001084 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.7e-42
Identity = 100/189 (52.91%), Postives = 122/189 (64.55%), Query Frame = 1


Query: 9   RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDG------PQARQMRIAECLVGDE 68
           RKPVF KV +L+PGT+GHTL VKV+++  VL K   +       P A   RIAECL+GDE
Sbjct: 27  RKPVFVKVGELKPGTNGHTLAVKVLSSTTVLDKKSRNSSSFSSRPGAANTRIAECLIGDE 86

Query: 69  TGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADERGG 128
           TG I+FTARNDQ K                P  ++  +  +     K +    L D+  G
Sbjct: 87  TGTILFTARNDQGK----------------PSAVFLDKKRNETWFCKLVNRLLLMDDALG 146

Query: 129 QEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLI 188
              +F   DLMK G T+ +RNAKIDMFKGSMRLAVD+WGR+EVTEPA+FTVKEDNNLSL+
Sbjct: 147 A--FF---DLMKPGNTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFTVKEDNNLSLV 194

Query: 189 EYELVNVVE 192
           EYELVNV E
Sbjct: 207 EYELVNVAE 194

[Close]

BLAST of CmoCh05G000110 vs. TrEMBL
Match: A0A0S3T398_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G098700 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.5e-36
Identity = 97/192 (50.52%), Postives = 112/192 (58.33%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SK GLRKPVFTKVDQLRPGTSGHTL VKVVNAK                        
Sbjct: 1   MADSKSGLRKPVFTKVDQLRPGTSGHTLTVKVVNAK------------------------ 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
               M++   R+D  + +       L G  T          + S+     I         
Sbjct: 61  ----MVMQKGRSDGPQSRQMRIAECLVGDETGMIIFTARNDQGSLPIHSVI--------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
               ++F  +DLM+EGAT+ LRNAKIDMFKGSMRLAVD+WGRVEV EPA+FTVKEDNNLS
Sbjct: 121 ----YFFGSLDLMEEGATVILRNAKIDMFKGSMRLAVDKWGRVEVKEPASFTVKEDNNLS 151

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVV E
Sbjct: 181 LIEYELVNVVVE 151

[Close]

BLAST of CmoCh05G000110 vs. TAIR10
Match: AT1G10590.3 (AT1G10590.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 127.5 bits (319), Expect = 8.9e-30
Identity = 85/191 (44.50%), Postives = 107/191 (56.02%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKG--RPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+G  RP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALAD 120
           VGDETG+IIFTARNDQ  M              +   + T +     + K ++    LA 
Sbjct: 75  VGDETGIIIFTARNDQVDMM-------------KEGSVVTLRNAKIDMYKGSM---RLAV 134

Query: 121 ERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNN 180
           +R G      +V++ +E   IT                                VK+DNN
Sbjct: 135 DRWG------RVEVAEEPTDIT--------------------------------VKDDNN 151

Query: 181 LSLIEYELVNV 190
           LSLIEYELV+V
Sbjct: 195 LSLIEYELVSV 151

[Close]

BLAST of CmoCh05G000110 vs. TAIR10
Match: AT1G23750.1 (AT1G23750.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 1  MAES-KPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLV 60
          MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+ KMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1  MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 61 GDETGMIIFTARNDQ 75
          GDETG+I+FTARNDQ
Sbjct: 61 GDETGVIVFTARNDQ 75

[Close]

BLAST of CmoCh05G000110 vs. TAIR10
Match: AT2G33845.1 (AT2G33845.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 129 QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVN 188
           QV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA  TVKEDNNLSL+EYELVN
Sbjct: 119 QVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEYELVN 178

Query: 189 VVEE 193
           VVEE
Sbjct: 179 VVEE 182

[Close]

BLAST of CmoCh05G000110 vs. TAIR10
Match: AT4G28440.1 (AT4G28440.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-22
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 129 QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVN 188
           QVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDNNLSL+EYEL+N
Sbjct: 89  QVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELIN 148

Query: 189 V 190
           V
Sbjct: 149 V 149

[Close]

BLAST of CmoCh05G000110 vs. TAIR10
Match: AT1G03810.1 (AT1G03810.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 90.9 bits (224), Expect = 9.3e-19
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 129 QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELV 188
           QVDLMK GAT+ LRNAKID+FK +MR+AVDRWGR+E+T P +F V   NNLSL+EYE++
Sbjct: 83  QVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLSLVEYEVI 141

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: gi|743851052|ref|XP_010940039.1| (PREDICTED: uncharacterized protein At4g28440-like isoform X1 [Elaeis guineensis])

HSP 1 Score: 238.4 bits (607), Expect = 1.0e-59
Identity = 126/192 (65.62%), Postives = 143/192 (74.48%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESK GLRKPVF +VDQLRPGTSGHTL VKVV++KMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKTGLRKPVFIEVDQLRPGTSGHTLTVKVVDSKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMI+FTARN+Q+  Q+ V +  +   +     +     +SS V    + P       
Sbjct: 61  DETGMIVFTARNEQDN-QINVLVLSISNGM-----LLLASKDSSNVRSHVLSPSITCP-- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                    VDLMK G T+ LRNAKIDMFKGSMRLAVD+WGRVEVT+PA FTVKEDNNLS
Sbjct: 121 -------FPVDLMKPGTTVILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTVKEDNNLS 177

Query: 181 LIEYELVNVVEE 193
           L+EYELVNVVEE
Sbjct: 181 LVEYELVNVVEE 177

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: gi|734312178|gb|KHN00356.1| (Hypothetical protein glysoja_000024 [Glycine soja])

HSP 1 Score: 236.1 bits (601), Expect = 5.1e-59
Identity = 130/192 (67.71%), Postives = 144/192 (75.00%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SK GLRKPVFTKVDQL PGTSGHTL VKVVNAKMV+Q+GR DGPQ+RQMRIAECLVG
Sbjct: 1   MADSKSGLRKPVFTKVDQLCPGTSGHTLTVKVVNAKMVMQRGRSDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMII+TARNDQ+    ++       CL            S+I A  T    + A  R
Sbjct: 61  DETGMIIYTARNDQDYAASQLSSQGRRFCL-----------RSNIFAGSTWNSMSSAKAR 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
           G  +     VD M EGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKEDNNLS
Sbjct: 121 G--KVGTNCVDTMTEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKEDNNLS 179

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVV E
Sbjct: 181 LIEYELVNVVAE 179

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BLAST of CmoCh05G000110 vs. NCBI nr
Match: gi|6573753|gb|AAF17673.1|AC009398_22 (F20B24.1 [Arabidopsis thaliana])

HSP 1 Score: 206.1 bits (523), Expect = 5.6e-50
Identity = 114/192 (59.38%), Postives = 137/192 (71.35%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKG--RPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+G  RP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALAD 120
           VGDETG+IIFTARNDQ + ++  F+   + C       Y F  ++ I             
Sbjct: 75  VGDETGIIIFTARNDQGE-RINAFVM-YFSCT-----FYRFMTDAII------------- 134

Query: 121 ERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPAAFTVKEDN 180
                  +F  VD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP   TVK+DN
Sbjct: 135 -------HFYPVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 179

Query: 181 NLSLIEYELVNV 190
           NLSLIEYELV+V
Sbjct: 195 NLSLIEYELVSV 179

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BLAST of CmoCh05G000110 vs. NCBI nr
Match: gi|703113752|ref|XP_010100463.1| (hypothetical protein L484_027775 [Morus notabilis])

HSP 1 Score: 193.0 bits (489), Expect = 4.9e-46
Identity = 110/192 (57.29%), Postives = 123/192 (64.06%), Query Frame = 1


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVV+ KMVLQKGR DGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRADGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARNDQ+   V  F  ++ G +   +       E S V  +           
Sbjct: 61  DETGMIIFTARNDQDMPGVMNF-DEMPGVMNFDEMPVDLVKEGSTVILRN---------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   ++D+ K    +                 VD+WGRVE+TEPA FTVKEDNNLS
Sbjct: 121 -------AKIDMFKGSMRLA----------------VDKWGRVEITEPADFTVKEDNNLS 158

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 158

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BLAST of CmoCh05G000110 vs. NCBI nr
Match: gi|976909835|gb|KVH96824.1| (Nucleic acid-binding, OB-fold [Cynara cardunculus var. scolymus])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 100/189 (52.91%), Postives = 122/189 (64.55%), Query Frame = 1


Query: 9   RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDG------PQARQMRIAECLVGDE 68
           RKPVF KV +L+PGT+GHTL VKV+++  VL K   +       P A   RIAECL+GDE
Sbjct: 27  RKPVFVKVGELKPGTNGHTLAVKVLSSTTVLDKKSRNSSSFSSRPGAANTRIAECLIGDE 86

Query: 69  TGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADERGG 128
           TG I+FTARNDQ K                P  ++  +  +     K +    L D+  G
Sbjct: 87  TGTILFTARNDQGK----------------PSAVFLDKKRNETWFCKLVNRLLLMDDALG 146

Query: 129 QEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLI 188
              +F   DLMK G T+ +RNAKIDMFKGSMRLAVD+WGR+EVTEPA+FTVKEDNNLSL+
Sbjct: 147 A--FF---DLMKPGNTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFTVKEDNNLSLV 194

Query: 189 EYELVNVVE 192
           EYELVNV E
Sbjct: 207 EYELVNVAE 194

The following BLAST results are available for this feature:

BLAST of CmoCh05G000110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4844_ARATH	7.1e-21	75.41	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1	[more]

BLAST of CmoCh05G000110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B2NT96_GLYSO	3.5e-59	67.71	Uncharacterized protein OS=Glycine soja GN=glysoja_000024 PE=4 SV=1	[more]
Q9SGZ2_ARATH	3.9e-50	59.38	F20B24.1 OS=Arabidopsis thaliana PE=4 SV=1	[more]
W9RCR1_9ROSA	3.4e-46	57.29	Uncharacterized protein OS=Morus notabilis GN=L484_027775 PE=4 SV=1	[more]
A0A103XTZ1_CYNCS	8.7e-42	52.91	Nucleic acid-binding, OB-fold OS=Cynara cardunculus var. scolymus GN=Ccrd_001084...	[more]
A0A0S3T398_PHAAN	2.5e-36	50.52	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G098700 PE=...	[more]

BLAST of CmoCh05G000110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10590.3	8.9e-30	44.50	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	1.7e-28	77.33	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	1.7e-25	84.38	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	4.0e-22	75.41	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	9.3e-19	67.80	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmoCh05G000110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|743851052\|ref\|XP_010940039.1\|	1.0e-59	65.63	PREDICTED: uncharacterized protein At4g28440-like isoform X1 [Elaeis guineensis]	[more]
gi\|734312178\|gb\|KHN00356.1\|	5.1e-59	67.71	Hypothetical protein glysoja_000024 [Glycine soja]	[more]
gi\|6573753\|gb\|AAF17673.1\|AC009398_22	5.6e-50	59.38	F20B24.1 [Arabidopsis thaliana]	[more]
gi\|703113752\|ref\|XP_010100463.1\|	4.9e-46	57.29	hypothetical protein L484_027775 [Morus notabilis]	[more]
gi\|976909835\|gb\|KVH96824.1\|	1.3e-41	52.91	Nucleic acid-binding, OB-fold [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G000110.1	CmoCh05G000110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 129..187 score: 1.6E-21coord: 12..77 score: 6.7
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 6..77 score: 4.71E-16coord: 129..189 score: 1.13
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 130..192 score: 9.6E-91coord: 1..74 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G000110	Cucsa.394190	Cucumber (Gy14) v1	cgycmoB1093
CmoCh05G000110	CmaCh12G000060	Cucurbita maxima (Rimu)	cmacmoB193
CmoCh05G000110	CmaCh05G000100	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G000110	Cla000797	Watermelon (97103) v1	cmowmB742
CmoCh05G000110	Csa2G348250	Cucumber (Chinese Long) v2	cmocuB777
CmoCh05G000110	MELO3C010663	Melon (DHL92) v3.5.1	cmomeB718
CmoCh05G000110	ClCG08G018040	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G000110	CSPI02G17000	Wild cucumber (PI 183967)	cmocpiB782
CmoCh05G000110	Lsi08G016820	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G000110	Cp4.1LG11g00570	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G000110	Cp4.1LG07g00100	Cucurbita pepo (Zucchini)	cmocpeB746
CmoCh05G000110	MELO3C010663.2	Melon (DHL92) v3.6.1	cmomedB815
CmoCh05G000110	CsaV3_2G024610	Cucumber (Chinese Long) v3	cmocucB0918
CmoCh05G000110	Cla97C08G161810	Watermelon (97103) v2	cmowmbB802
CmoCh05G000110	Bhi04G000524	Wax gourd	cmowgoB0939
CmoCh05G000110	CsGy2G016990	Cucumber (Gy14) v2	cgybcmoB238
CmoCh05G000110	Carg20514	Silver-seed gourd	carcmoB0860
CmoCh05G000110	Carg21808	Silver-seed gourd	carcmoB0686

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G000110	CmoCh12G000060	Cucurbita moschata (Rifu)	cmocmoB152

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G000110	Cucurbita maxima (Rimu)	cmacmoB747
CmoCh05G000110	Wild cucumber (PI 183967)	cmocpiB797
CmoCh05G000110	Cucumber (Chinese Long) v2	cmocuB793
CmoCh05G000110	Melon (DHL92) v3.5.1	cmomeB707
CmoCh05G000110	Melon (DHL92) v3.5.1	cmomeB723
CmoCh05G000110	Watermelon (Charleston Gray)	cmowcgB690
CmoCh05G000110	Watermelon (Charleston Gray)	cmowcgB703
CmoCh05G000110	Watermelon (97103) v1	cmowmB750
CmoCh05G000110	Cucurbita pepo (Zucchini)	cmocpeB731
CmoCh05G000110	Bottle gourd (USVL1VR-Ls)	cmolsiB716
CmoCh05G000110	Cucumber (Gy14) v2	cgybcmoB672
CmoCh05G000110	Melon (DHL92) v3.6.1	cmomedB804
CmoCh05G000110	Silver-seed gourd	carcmoB0344
CmoCh05G000110	Cucumber (Chinese Long) v3	cmocucB0934
CmoCh05G000110	Watermelon (97103) v2	cmowmbB789
CmoCh05G000110	Wax gourd	cmowgoB0918
CmoCh05G000110	Wax gourd	cmowgoB0958
CmoCh05G000110	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh05G000110	Cucumber (Gy14) v1	cgycmoB0801