CmoCh12G000060 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G000060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNucleic acid-binding, OB-fold-like protein
LocationCmo_Chr12 : 28808 .. 33634 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGATTAAAGTCTTCTGGCGAACAATCATCGACGGTTGTTATTTCATAGCAACTTTATATCTTTCCTCGAAGCTAGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCTTTCTCTGCCTTCGTCTTTGCCTCTGCCACTCGTAAAAGGTGATCTCTAAACCCTAAAATTTCAGTTCCGGTTATTCCTATGCCTATCCTTTCTCTGTTTTACACTTCTCTTCATTTCTTAACTTTTATTGGCGTTTAGGTTGCGATTTTCTGCTACCTGTTCGGTTTGCATGGCCTCTTTATGGTTCCCATTTGGGTCATTCAAGTGTGAAATTTTATATGGAGATTGTGACGAGAAACACTCTCTGAACATTAAGTTTGTTGATTTATAGCTGATTTTCGTTTTTCTTCTAGTCCCACATTTGGCCACAGTAGTTTCATTATCTTTCATTTGATTCACGGAAAGTTTTCGAAAAGAAAAGTTCTGAACAATTATGTATATCCTTGGATGTAATATTAGTATTTGTGTTTAAGCGATTAATAGCTTAAATGCTCTCAAGCGATTAATGGTGTCGTAATTGGAGTGCCTGCTTGAGGTCTATTTGTTGGTGGGACGAGGGTTTAGAAGATTTGAAGTTAACCAAGAAAATGATATTGACGATAAATTAAGAGAACAAACAAGATGTTATTCGAGGAATCTATGCACCAAATGTGGTTGAGCGTGAAAACAGTAGTGTTCTGGTTGGAAATTCTAGTTATTAACACTTGTTTATCTTCTTGACTCTGGTTCATTTGATTTAAATCTGACAGAGTTGCTATATTATCTTCAATTTTTGAGACATAAAGTGGAAGATTGCATAATGGAGCAACCATCTGTGAGATCCCATATCGGTTGGAGAGGGGAATGAAACATTCCTTACCAGGGTGTGGAAACATCTTCCTAGTAGATGCGTTTTAAAACCGTGAAGTTGGCGGCGATACGTAACGATAGACTTTGGCTATTACCAATGGTATCAGAGCCAGACACTGGGTGGTGTGCCAACAAGAACGCTAGGACCCCAAGGAGGGTGGATTGTGAGATTCCGGTTGGAGAGTGGAACGAAGCATTTCTTGTAAGAGTGTGGAAACCTCTCCCTAGTAGATGTGTTTTAAAAGTTGACGGTGATGAGTAATGGGCCAAAGTGGACAATTTGCTTTTGGTTAAAATTTAATGTCAACATATTTTACATTTTGCTTTTGGTTGACCTAGTAGTCATACAGGGTTGGAGAGAGTGGGTTCCTAGGCACCGTAACTGAGATTTATACTATCCTGGTGGTCAATGTGATAGGTTAAGGCAATTATTGTGTTTCTTTGAATGAGAAATTTATTTATTTATCATTTTTTCATGGTTATTTTATCAATCCCAGCCTTTGTCCACCTTGGTGGTTTACTGGTTGTGTGGGCATTTTGTAAAAATTCACAATGTCAATCTATTGTCTAACTGTTTTGTTACTGTTTGTATATTGGCATGATTAGGTATTCGGGGAAATGGCAGAATCCAAACCTGGACTGAGGAAACCAGTATTTACCAAGGTTGATCAACTTCGGCCAGGCACTAGTGGGCATACTCTTACTGTTAAGGTTGTGAATACTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTAGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGGTAAACTTACAAAAGTATTTGAGCCTGCACCATTTACGTAATTTTATCTTGTATGAAGCATGCCAATTTTCTTCTTTATGCTTGCATTCTAAATCCACATGCAACTGAAGAGGTGCTGTGAAGAGTTTTAATAACTGTTCTATATCGTGTGATCTCACTCCCTATCCACAATTACTGTGAAGGGTAAAGGTTGTTTTGATATATATTAACTTCCTGCTAGTGAAGATTTCGTAAAGGGAGGCTTTCTGTTATCTTAAAAGTTGTCATGGATCTTTCTTTTTCACTGGAAAAAAAACTCGATTTTACTGAATACTGGGATATATGGAGGTTGAAATGCAAATCCAACTGAAATAAATCATCCATACTAAAAGTACCTTTTAAAAATTATAAGTTCATCACTTTGTCAGCTATATATATTGGTCAGTGTAATGGCTCATAGTTGGATAATGACTTGAATAGTTCAATTACATGACGGATGTTGGATAAAGTTAAAACTATACATTAGAAAGGATAAGCTCTACGCTGAATCTTGAGAATAATAGATTTTGAATGAACCCTGTGTATTATTTTGATTTTGATCTTATGAGTGAGATTGGTACTGGAAGGTCCATCAGCTGTAGTTAATGTTGTTTCTACAGTGGCTTCTTTTTTTCTATTTACATTTTTTTTTGTGTTCGGATCTGATTATGCATTCTGTTGAGTGTTAGTTCAGAATACTGTATGTTATTTGTAATATAAAGTAAGTGTAGATGCTTTAGTGATCAAAAGATCGTAGACTGTTTTATTGTATGAGGGAGTAAGAGAATGAGAACTAATTGTTATCAATATTAAAAGTCATCTAGTTACTGGAACCTACTTGAAGCATTAATTTTGGCTTCTTGTTTTTGGAGGAACTACCATCACTCAGGAATCCAGGGCCATTTAATAACGTTTTTGTTTCTCATTTCTCATTTCTCGTTCCTATTACTATTTTTTTTAGAAACATGCATTTTTGACAAATGATTTTGTTTCTCGTTTCCAAATCTAAAGAAATGTTTCCTCAAAGTATGAAGAATTTGGGGAATTCCAAAAAGAAGTTTCTGTTTTAATGTTTCTCTTTTCATTTTGGTTGTTCCAGCCTTAAAGCACATCCCAATTCCCAATGCGAAGTGAACGTGTTCACTTGTTAACATATTTGCCTTTTTCTTGCATCTAAAAACTTTTTTTTTAGTTTTAGCAAAGTTTTTGAAGAGAATAATTTTTTTAAATTTTTTTTTAATTAAGACAAACATTTTAATTTTTGAACTTTAAATTTGATTTGGGATTTGAATAGATATTACAAATTTTACATTTTAATTAAAATAATTTTATTTGTATATTTAGCCATTACTTATCATTTTTTACTATATAGTATATTATTTTTACATGATATTACAAAGTTTTAAGGTGAATGGCGAGATATTCAAATTTGGACAACAGTTGAAGGATAGATACAACTTTATTGTTGTGCTTCAATTTTGCATTGGGACTTGATTATAATATAAAGTTTTGATAATTATTTTTATATGTTTTATTGCATGCTGTATGTTTTCTGTATTTCAATTTGAGGTATAACAGAGAAAGAAATTGGAAGCAAGAAATAGTTATCAAACTAGTTTCTTTTTCTGTTTCTTGTTAGGAAGGAGAAATAGGTATGACATACTTTATTGTTGTGTTTGGTTTGATGTTGGACAATTGCAGTTTTTAGAACTCAAGGACACTAATGTACAACCTATAGAATAGATCCTGTTCAAGTAAGGTTGTTTATCAAATACACATAAATTAACACTGGTTTCAATTATTCACTTACTATTTCGTTTGTAAGTGAATAGTTGAATGGAAAACTGGTTAGTAACACCATATCTTTGTAATTGTGTAGTTGCAATGAAAACTATCCCTCCTGCATGGGCAGATTAAAAAGGTGGACAAGAATGGAATTTTATGCGAAGTAGGTTCATGATTTGACTAACAGGTGGTGCAGGAACGAGCTAGGATTAAATTTTTTGTAGTGCAAACTCTTATTGTAAAAATATAGCCCTCCGTGATTTGACCTATAGCCTATCTTTGTTCACGAGATTAGTAAATAGGTCATCCAGAATTTACTCCAAGCATTCAGGACAATTTTATAAGTTTACTGTGCCTTGCATTTTTTTAAAAATTCCAACTGACCCCTAAAATTTAATCTGGTTTAATTAACCAGCCCTTTATGTATATTTTATCTTAATTTTGAATGTCCATGTAGCCACTGTTCAATTTATTGACTTGAACTAATATTTCTTTTGGCATTTAATAAATGGAATTGAAGTTTCCGTAACTCATTTACTCGTAATTCTTTGCTTTCTTCTGTGTAGTCGACTTGATGAAAGAAGGTGCCACTATAATCCTGCGCAATGCTAAGATAGACATGTTCAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTACTGAGCCTGCAAGTTTTACTGTTAAGGAAGAGAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTGGTGGAAGAGTGAATTTTGTGATCGCGTTCACTTTCCTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTACAAAATTACAAGTTTCCTTTGGGGTACTGAAAATGCTCACCGAGTTCATTATTAGGAAATAGAATTCTGGAAGCCAGTCGTACGAAAGTTGATTTTCATCCACGCAGCTTATTGTTAGAACCGTTGTTGGGATTTACAAACAGGTGGGTAATGGCTGCAGTTGATGGAAGAAGGCTTAGCCGGCTTTTTTTACTTTTCATTTGGCAAGTATTTTATTGGCTGTGACACAGTTTTATGATGTTGAAACTATCATAAGATGATGACAAGAGTAGCGCCTTGCGTGGTTTTAAATTATGTTTTTTTGTTAGTCAAGGTTCATGCCAACTGAACTGCTTTTGAACTCAAATCCAATGCTTGAATGATTGATTACCCTTCATGTGTGAGGATTTCACGAGTAAATATCAGTCTCCGGTTTTAGGTTGCCTTTGTTTGTGTATGTGTTGTATGATGTGCTTCAGCAGG

mRNA sequence

CGATTAAAGTCTTCTGGCGAACAATCATCGACGGTTGTTATTTCATAGCAACTTTATATCTTTCCTCGAAGCTAGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCTTTCTCTGCCTTCGTCTTTGCCTCTGCCACTCGTAAAAGGTATTCGGGGAAATGGCAGAATCCAAACCTGGACTGAGGAAACCAGTATTTACCAAGGTTGATCAACTTCGGCCAGGCACTAGTGGGCATACTCTTACTGTTAAGGTTGTGAATACTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTAGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTCGACTTGATGAAAGAAGGTGCCACTATAATCCTGCGCAATGCTAAGATAGACATGTTCAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTACTGAGCCTGCAAGTTTTACTGTTAAGGAAGAGAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTGGTGGAAGAGTGAATTTTGTGATCGCGTTCACTTTCCTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTACAAAATTACAAGTTTCCTTTGGGGTACTGAAAATGCTCACCGAGTTCATTATTAGGAAATAGAATTCTGGAAGCCAGTCGTACGAAAGTTGATTTTCATCCACGCAGCTTATTGTTAGAACCGTTGTTGGGATTTACAAACAGGTGGGTAATGGCTGCAGTTGATGGAAGAAGGCTTAGCCGGCTTTTTTTACTTTTCATTTGGCAAGTATTTTATTGGCTGTGACACAGTTTTATGATGTTGAAACTATCATAAGATGATGACAAGAGTAGCGCCTTGCGTGGTTTTAAATTATGTTTTTTTGTTAGTCAAGGTTCATGCCAACTGAACTGCTTTTGAACTCAAATCCAATGCTTGAATGATTGATTACCCTTCATGTGTGAGGATTTCACGAGTAAATATCAGTCTCCGGTTTTAGGTTGCCTTTGTTTGTGTATGTGTTGTATGATGTGCTTCAGCAGG

Coding sequence (CDS)

ATGGCAGAATCCAAACCTGGACTGAGGAAACCAGTATTTACCAAGGTTGATCAACTTCGGCCAGGCACTAGTGGGCATACTCTTACTGTTAAGGTTGTGAATACTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTAGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTCGACTTGATGAAAGAAGGTGCCACTATAATCCTGCGCAATGCTAAGATAGACATGTTCAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTACTGAGCCTGCAAGTTTTACTGTTAAGGAAGAGAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTGGTGGAAGAGTGA
Homology
[Close]
BLAST of CmoCh12G000060 vs. Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-44
Identity = 89/132 (67.42%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQARQM---RIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEEN 128
           TG I+FTARNDQVDLMK GAT+ILRN++IDMFKG+MRL VD+WGR+E T  ASFTVKE+N
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 129 NLSLIEYELVNV 135
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]
BLAST of CmoCh12G000060 vs. TrEMBL
Match: A0A0A0LNA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348250 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of CmoCh12G000060 vs. TrEMBL
Match: A0A151TGI4_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012448 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.3e-67
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGAT+ILRNAKIDMFKGSMRLAVD+WGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]
BLAST of CmoCh12G000060 vs. TrEMBL
Match: A0A151TGI6_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012449 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.5e-67
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGM+IFTARNDQVDLMKEGAT+ILRNAKIDMFKGSMRLAVD+WGRVEVTEPASFTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]
BLAST of CmoCh12G000060 vs. TrEMBL
Match: A0A067JUR6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17741 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-65
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVV+TKMVLQKGR DGPQ RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRADGPQIRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDL+KEG TIILRNAKIDMFKGSMRLAVD+WGRVEV EPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLVKEGTTIILRNAKIDMFKGSMRLAVDKWGRVEVAEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of CmoCh12G000060 vs. TrEMBL
Match: D7TDE2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0127g00840 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.0e-65
Identity = 124/137 (90.51%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESK GLRKPVFTK++QLRPGTSGHTLTVKVV++KMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKSGLRKPVFTKIEQLRPGTSGHTLTVKVVSSKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEG+T++LRNAKIDMFKGSMRLAVD+WGRVEVTEPASF+VKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGSTVVLRNAKIDMFKGSMRLAVDKWGRVEVTEPASFSVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSL+EYELVNVVEE
Sbjct: 121 DNNLSLVEYELVNVVEE 137

[Close]
BLAST of CmoCh12G000060 vs. TAIR10
Match: AT1G23750.1 (AT1G23750.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 230.3 bits (586), Expect = 7.0e-61
Identity = 112/137 (81.75%), Postives = 128/137 (93.43%), Query Frame = 1 

Query: 1   MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLV 60
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 61  GDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVK 120
           GDETG+I+FTARNDQVDLMKEG+T+ LRNAKIDM+KGSMRLAVD+WGRVEVTEPASF VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 121 EENNLSLIEYELVNVVE 137
           E+ N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

[Close]
BLAST of CmoCh12G000060 vs. TAIR10
Match: AT1G10590.3 (AT1G10590.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-55
Identity = 107/137 (78.10%), Postives = 123/137 (89.78%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKG--RPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+G  RP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASFT 120
           VGDETG+IIFTARNDQVD+MKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   T
Sbjct: 75  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 134

Query: 121 VKEENNLSLIEYELVNV 135
           VK++NNLSLIEYELV+V
Sbjct: 135 VKDDNNLSLIEYELVSV 151

[Close]
BLAST of CmoCh12G000060 vs. TAIR10
Match: AT2G33845.1 (AT2G33845.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-49
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 1 

Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMII 68
           +KPVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 69  FTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLI 128
           FTARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA  TVKE+NNLSL+
Sbjct: 113 FTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLV 172

Query: 129 EYELVNVVEE 138
           EYELVNVVEE
Sbjct: 173 EYELVNVVEE 182

[Close]
BLAST of CmoCh12G000060 vs. TAIR10
Match: AT4G28440.1 (AT4G28440.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-45
Identity = 89/132 (67.42%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQARQM---RIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEEN 128
           TG I+FTARNDQVDLMK GAT+ILRN++IDMFKG+MRL VD+WGR+E T  ASFTVKE+N
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 129 NLSLIEYELVNV 135
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]
BLAST of CmoCh12G000060 vs. TAIR10
Match: AT1G03810.1 (AT1G03810.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 167.9 bits (424), Expect = 4.3e-42
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 1 

Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNT---KMVLQKGRPDGPQARQMRIAECLVGDETGM 68
           RKPVF KVDQL+PGTSGHTL VKV+ +   K  ++K           RIAECL+GD+TG 
Sbjct: 15  RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTGC 74

Query: 69  IIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLS 128
           I+FTARNDQVDLMK GAT+ILRNAKID+FK +MR+AVDRWGR+E+T P SF V   NNLS
Sbjct: 75  ILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLS 134

Query: 129 LIEYELV 133
           L+EYE++
Sbjct: 135 LVEYEVI 141

[Close]
BLAST of CmoCh12G000060 vs. NCBI nr
Match: gi|449450468|ref|XP_004142984.1| (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of CmoCh12G000060 vs. NCBI nr
Match: gi|1012354977|gb|KYP66164.1| (Uncharacterized protein At4g28440 family [Cajanus cajan])

HSP 1 Score: 261.2 bits (666), Expect = 1.0e-66
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGAT+ILRNAKIDMFKGSMRLAVD+WGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]
BLAST of CmoCh12G000060 vs. NCBI nr
Match: gi|1012354978|gb|KYP66165.1| (Uncharacterized protein At4g28440 family [Cajanus cajan])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGM+IFTARNDQVDLMKEGAT+ILRNAKIDMFKGSMRLAVD+WGRVEVTEPASFTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]
BLAST of CmoCh12G000060 vs. NCBI nr
Match: gi|1012099909|ref|XP_015957084.1| (PREDICTED: uncharacterized protein At4g28440 [Arachis duranensis])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-65
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVV+TK+V+QKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKLVMQKGRPDGPQPRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVD MKEG+T+ILRNAKIDMFKGSMRLAVD+WGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDEMKEGSTVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVE 137
           +NNLSLIEYELVNVVE
Sbjct: 121 DNNLSLIEYELVNVVE 136

[Close]
BLAST of CmoCh12G000060 vs. NCBI nr
Match: gi|802719616|ref|XP_012085375.1| (PREDICTED: uncharacterized protein At4g28440 isoform X1 [Jatropha curcas])

HSP 1 Score: 256.1 bits (653), Expect = 3.4e-65
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVV+TKMVLQKGR DGPQ RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRADGPQIRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDL+KEG TIILRNAKIDMFKGSMRLAVD+WGRVEV EPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLVKEGTTIILRNAKIDMFKGSMRLAVDKWGRVEVAEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

The following BLAST results are available for this feature:
BLAST of CmoCh12G000060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4844_ARATH1.9e-4467.42Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1[more]
BLAST of CmoCh12G000060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA1_CUCSA1.0e-6897.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348250 PE=4 SV=1[more]
A0A151TGI4_CAJCA7.3e-6794.16Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012448 PE=4 SV=... [more]
A0A151TGI6_CAJCA9.5e-6793.43Uncharacterized protein At4g28440 family OS=Cajanus cajan GN=KK1_012449 PE=4 SV=... [more]
A0A067JUR6_JATCU2.4e-6593.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17741 PE=4 SV=1[more]
D7TDE2_VITVI4.0e-6590.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0127g00840 PE=4 SV=... [more]
BLAST of CmoCh12G000060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23750.17.0e-6181.75 Nucleic acid-binding, OB-fold-like protein[more]
AT1G10590.31.2e-5578.10 Nucleic acid-binding, OB-fold-like protein[more]
AT2G33845.12.1e-4974.62 Nucleic acid-binding, OB-fold-like protein[more]
AT4G28440.11.1e-4567.42 Nucleic acid-binding, OB-fold-like protein[more]
AT1G03810.14.3e-4264.57 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of CmoCh12G000060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450468|ref|XP_004142984.1|1.5e-6897.81PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus][more]
gi|1012354977|gb|KYP66164.1|1.0e-6694.16Uncharacterized protein At4g28440 family [Cajanus cajan][more]
gi|1012354978|gb|KYP66165.1|1.4e-6693.43Uncharacterized protein At4g28440 family [Cajanus cajan][more]
gi|1012099909|ref|XP_015957084.1|1.5e-6593.38PREDICTED: uncharacterized protein At4g28440 [Arachis duranensis][more]
gi|802719616|ref|XP_012085375.1|3.4e-6593.43PREDICTED: uncharacterized protein At4g28440 isoform X1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G000060.1CmoCh12G000060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 12..132
score: 5.5
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 6..134
score: 6.86
NoneNo IPR availablePANTHERPTHR31472FAMILY NOT NAMEDcoord: 1..137
score: 5.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G000060Cucsa.394190Cucumber (Gy14) v1cgycmoB1085
CmoCh12G000060CmaCh12G000060Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G000060CmaCh05G000100Cucurbita maxima (Rimu)cmacmoB766
CmoCh12G000060Cla000797Watermelon (97103) v1cmowmB130
CmoCh12G000060Csa2G348250Cucumber (Chinese Long) v2cmocuB151
CmoCh12G000060MELO3C010663Melon (DHL92) v3.5.1cmomeB152
CmoCh12G000060ClCG08G018040Watermelon (Charleston Gray)cmowcgB164
CmoCh12G000060CSPI02G17000Wild cucumber (PI 183967)cmocpiB152
CmoCh12G000060Lsi08G016820Bottle gourd (USVL1VR-Ls)cmolsiB178
CmoCh12G000060Cp4.1LG11g00570Cucurbita pepo (Zucchini)cmocpeB150
CmoCh12G000060Cp4.1LG07g00100Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G000060MELO3C010663.2Melon (DHL92) v3.6.1cmomedB168
CmoCh12G000060CsaV3_2G024610Cucumber (Chinese Long) v3cmocucB0178
CmoCh12G000060Cla97C08G161810Watermelon (97103) v2cmowmbB181
CmoCh12G000060Bhi04G000524Wax gourdcmowgoB0192
CmoCh12G000060CsGy2G016990Cucumber (Gy14) v2cgybcmoB162
CmoCh12G000060Carg20514Silver-seed gourdcarcmoB0855
CmoCh12G000060Carg21808Silver-seed gourdcarcmoB0684
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G000060CmoCh05G000110Cucurbita moschata (Rifu)cmocmoB152
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G000060Cucurbita pepo (Zucchini)cmocpeB162
CmoCh12G000060Bottle gourd (USVL1VR-Ls)cmolsiB162
CmoCh12G000060Cucumber (Gy14) v2cgybcmoB564
CmoCh12G000060Melon (DHL92) v3.6.1cmomedB150
CmoCh12G000060Cucumber (Chinese Long) v3cmocucB0207
CmoCh12G000060Watermelon (97103) v2cmowmbB167
CmoCh12G000060Cucurbita moschata (Rifu)cmocmoB137