CsGy2G016990 (gene) Cucumber (Gy14) v2

NameCsGy2G016990
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionNucleic acid-binding%2C OB-fold-like protein
LocationChr2 : 27243945 .. 27249670 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTAAGAACCATTCATTCACTTTGAGAAGCATTTTATGAGGTAGAAGTCTCTTTGAGAAATGCGTAAGGTGGAAAATTGGTAATGGTAGGCACATCATCATAGATGAGATAAATGACTTTTTCATGAAGATTCGGGAGGTTCAATGTTGGTTAATGATGATTTTAAGGGGATAGAGAGTTTTGTGCCTATTGATTCAAGTGGAAATTGAAATGAACATTTAATAAAATCTTATTTCATCTAGACGGATGTCATTTCTATTATTATTATTTTTTTAAGGAATCTCGAATATAATTTTTGGTGGTTTTGAGTTCTAAAGGCATGTTTTTTTTTAAAGAAAATTGCTTATTACCTTAGCATGGGTGCTAGAGATTCTTTTGAGGCCTCTTCATCAAATCAGAAAAATCAAAAGAAGAGATGGAAAGTTCTTTGGAATTCAGAGCCCTCCCTAAAACAAAAATCTGTGCATGGAGAATTTCAAAATATGTTATTTCCTTCAAGTTGAATTTATAGAGGAAGGGAATCTCTAGCGATCATTGTTGTCTCTTCTGCAAGAATTGTGAGAAGAAGTGCAAGTCCTTCTACGTCCAAAGGAAAGGAGGTTCAAAGATTTGGAATCATTTTTTCATCCTTATGGTGGCCCATTTTTTATTGCAAAAATAGTGAGGATCCTCTGTTGTTGTACGAATGATATTAAGAAGATTATTTTTTATTTGGTGGGTGAATTTGGTTGGGTTGAAATTGGTGGGTTTTGAGAACAACCTCTTCTAGTTAGAATTTTGTATTAATTATGCGTGAAATGCATGTCAAGTTACTATTTGTGGGTGCATCCTCCCCGTAATTAAAAATTAAGTGTTGATGCTTCTTGGTGTGATAATGTTGAGTGGAATGGTGCGAACTAGATTATTCGTGGGCTCGAGTCCTTGATCGAAGTGGACTTCAAAAGTTGTATAAACACTAAACGTGGGAGCTTTGTTGATGCATTTCGAGTATTTTGGTGCCATCGGTGACTAAAAATCTAGCTCATACGACACTATTTATGCTTTGTTGAACCTGGATCATGATCTGTTTGTGTTATGAATCTTTCTTGTAATGTTTGTATGTTAGCTAATACCTTCAAATCTTTCTTGCAATGTTCGTACGTTAGCTAGTTTCGCATTTTTTTGGGAAAGATATTTTCGCTTTTGTCTTCTCTTTTTTGTTGTGGGTAGTTGTGGTTGCAGTTGTTCCCTAAAAAAATAATTTTCCCATTATTTTAAACGATAAAAGTTAAAACGACTTGAATCTTTTGCCAATTTTATTTTTTGAAACCCCGAGTTACAGCATCGAAGGTTAAATTTACGGGTCAGACACGTGGTCGATCACGATTAAAGTCCTCTGGCGATCAATAATCGACGGTTGATATTTTCACAGCAACTTTATTTCTTTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCCTTTTCCCCCTTCGTCTTTGCCTCCGTCCACCACTGGTAAAAGGTGATTTCTAAACCCTAAAATTTCAGCTTCGTTTATTCTTATACCTTTTATTTTCTAATTTGTATTTCTCCTCGCTTCTCTAATTTTATGGGCACTCAGGTTGCGATTTTGTGGTAATCGTTTGTTTTGCATATTCTTTTAATGATTCTCATTTAATACTAATTTACGACATTCGAGTGTGAAATTTTATATAGAGAATGATGAGAGGTACTTGCTGAAAATCAAATTCGATGACTTAATACTATATTTTGTTTTTAGGTTTAAGGATGCTAATAAGCATCGTTTTAGTACGCTCCATTTCCTTAAGTCCCACATTAAGCCTCTAGTTGTTTGATTATCTTTCATTTGATTCACGAAAATTTTCGGAAAGACAAGTTATGAAAAACTATTTATGTCGTTGGATGTGATAATTAGCATCGAGATTAGTCGGAGGTGCTCGGAGATTTGACGATATTCAAAATATAAATAATAATTTGGCACTTTGCTTTTCAATCTTATTGTGTGTTTCGTTGAATCGACAATTTGAATTTTTTGTCCATTATCTATTTATTTTCTGTCAGTCATGAATATTTTATCAATCCCTGGCGTTCCATCCACCTCGATGATATACTGATAGCGTGTGTGTGTGCGTTTTTAAAAAAATCACAACTTCATTCTGTTATCTAACTGTATTCTTATAGACTACATGTTGTCTAACTGTTTTCTTATTGTTTGTTATTGGCACAATTAGGGATTAGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGGTAAATTTCCACAATATTTGAGGAGCCTGCACCATTTGTGTTTATTTGTATCTTGTATGAAGCATGCGAACTTTCTTCTTTATGCTTACTTCTGTACATAATACTAAATATTTGTCGTTAGTTAGGTTCTTTATATCCACCTGCTGCTGGTGCATGCAAGAGTTTTCATAACTGATTTGTCTCACCCCCTGTCCTCAATGTATTTACATATCTCACTGTAAAAAGTTGTAAGCTGTTATGATATATCAACTTCCTACTAGCAATATTTCATAAAGGTTGGAGACATTTTATTGTTATAAAATCGTGGACCTTTCCTTTTCAGACAAGAAACTAGACTTTATCTAAATGCTGGCACATATGGAGGCTGAGATACTAAGCCAATTGAAATAAGTCATCCATACAAATATTACCATCTAAAGAACTGAGTGCCTACTTTGTTTGTTATATATATTAGTTAGCGTAATGGCTTATAATAATAGTTGGATAATCACTTCAATAGTTCTGTTACATAGCGATGGATTAATGTATATGTCTCCCATTTGAAATAATAAGCTCTTTGCTGAGTCTTGAGAATAATAGATTTTGGAGGAATCATTTGTATTGCTTCGATTATGATCTTATTAGGTGTTGAATGATATAATATTTATTTTTCCTTGCATCTATCAAATTAAGTTTTTGGGTCAATTGGTGATTTAATATCGGAGCAGGTGATCTAGGACTACAAGGAGGTTTTATTTCCTTCCTAACTAAAATTGGTTTCTACTTGTTGAGTCTTTTTCATATATCAAGCCCACAAGTGAGGGGGAGTTGAATGATATAATATTAAATTTGGACTCACCCATCAGCTTAAGTTTTTGGGTCAGTTGGTGATTTAAGATTAGGGAAATTTTGGTTTTGGAAGATCCATCAATTGTAGTAAATGTTATTTCTATCTTGACTTATTTTATCTGTTGGTTTCATATGTATATTTTCATGTTAGGATCTGATTAGGTTGTTGCATGTCACTGAGTGCGCACTATTGTCAATACTGTATGTTAATCTAGGAAGCATGCACACGTCCAAAATGATGTAAGTGTCAGTGCCGGACATGTGTCCGACATCGATACGTCCCAACACGTCCATGCCACGAAATTCATGTTGCTTTTTATTTATTATTTTCCAATTTTCGACACGTGAAGACACACAAAGACCCTGCATCAGACACACATAGACACATAAGAAACCCAAACCTTTCAAACCAGTAGGTGGCGGAGAGATGGTGGTCGGCATTGGCATGTTTGAGATCGAGCGGTGAAGGGAGAGCCTTATTACATCCATTTCATGTGATTGGCTATGCGTGACTGTGTGGGAGAAGGGGGAAGAGCAGAATCGGGGGAGAAAGTGGTTGTGTGGGAGAAGAGGAGAGCAGTGAAGGATAGAAAGGGAAATATTAGGATTAGGGTTTTAAATTTTAAATGGGCTTTGGGGCCCTTTTTAAAACTTAAATGGGCTTTTCCATTCCAAGTCGTGGGTTTATTTCTCATGAACAGGTTTTTATTTCATTTTTTTTCCTTCTTTTTTTAAAAAATTAATGCTCTTGTATTTTTCTTTTGTAGTCTTTTAGTAAGTCAGTTATTTTTAATAATCAATAACACTTGTATTATATATATTATGTGTGTGTGTATGTTTATATGTATATATAGATAGATATACATACATATATGGGTGTGTATTAAAAAAACAGTGTGTGGGTGTCGTGTCCATTTTTAGAAATTGCTGCGTCGCCATGTTGTGTCGATATCTCATGTCCGTGCTTCATAGATGTTAATTGAATTCCTAAGAACATGTAGATGCTTTAGTAATTTTGGAGAAACTGTCAGCGCCTAGGACTCTAGACAGCTCCACTTAGAAATATACGTTGTGTGATTGTTATGTTTGTTACAGTGTCTATCAAGTGCATCTTAACTAACCCCTGTTTCAATTACGCTTATTGTCTATTAGTTATATTGACCAACCTTATCATTTTTTCATATATAGATTCCTTCCAATTATTCACTTGCCATGTTCTAAAACTTATTTTACGATAGTATCCATAACCTCATTTAAATTGTATTAGTTGAGTGGTTTCTCATCATGCGTCAATCCTTTTCATTTTCTATTACACTTTTTTCCCCATTTGTGCCAAAAAACATCATATTAATAATTATTTTCCTAGAGTTTTCCACGTGCAATGTTCTATAACTTGTTTTACTATAATATTTATTACCTTATTTAAATTGTATTAAATTATGTTTTTTTTAATCATGTGTTAATTTTTCATTTTCATTTTCTGTCACTTTTTTTGACATTACATTTATTATCCTTCGAGTAGAAGATTGCTATACTTGGTTATTACCAAGCTATCAAAAATAAAGAAGAATGAGAATAAAAGAAGCTGTTGTTGTGGTTTTGTTTCTTTCCTCCTGAACAAGAATAGATAAAAGTTGTGAATTGTTGAATGGAAAAGTGGTTAATAACACCATAACGTTGTAGTTCTAGTTGCAAAGAGAACTATTCCTCTTACATAGGCAGGTGAAAGAGGTGGACAAGAATGGAATTTTTTTCAGGCTAGGTTCATGGTATGGCAGAGGAGAATGAGTGGTCCTGGAATGGGATAGTTGTATATAGATGGTTTTTCTCTTAGATCAAACTCATTGTTGTTAAATATATCCGTTTTTAACTTTTACATATACCCTATCTTTGTTCATGAGATTAGTAAATTACCTCATCTTGAACTCACTTTAAAGGTCACGAAAATTTTATTAGTTCATTGTACACGATTTTAGCTCCAAGTGATCCCTATACTGTTTGATTAACCAGTCCTTGGAGTTGAATGTGTTGGTGGACATATTTTAAATGGCATAAAGTTTCCATAACTCATTTACTCGTATGTCTTTGATATCTTTCATGTAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

mRNA sequence

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Coding sequence (CDS)

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Protein sequence

MPAKPSWHMCRNVDNLSGKVPKEWYFPSKSFLTVLWVFVFGEMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLIEYELVNVVEE
BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_004142984.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_008444319.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_011649474.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >KGN62287.1 hypothetical protein Csa_2G348250 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           +NNLSLIEYELVNVVEE
Sbjct: 121 ENNLSLIEYELVNVVEE 137

BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 6.3e-68
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

BLAST of CsGy2G016990 vs. NCBI nr
Match: XP_022996548.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNV+EE
Sbjct: 121 DNNLSLIEYELVNVMEE 137

BLAST of CsGy2G016990 vs. TAIR10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 234.2 bits (596), Expect = 6.3e-62
Identity = 113/137 (82.48%), Postives = 129/137 (94.16%), Query Frame = 0

Query: 43  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLV 102
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 103 GDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVK 162
           GDETG+I+FTARNDQVDLMKEG+T+TLRNAKIDM+KGSMRLAVD+WGRVEVTEPA+F VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 163 EDNNLSLIEYELVNVVE 179
           ED N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

BLAST of CsGy2G016990 vs. TAIR10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 109/138 (78.99%), Postives = 126/138 (91.30%), Query Frame = 0

Query: 42  EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAEC 101
           +MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAEC
Sbjct: 14  KMAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAEC 73

Query: 102 LVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPANF 161
           LVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP + 
Sbjct: 74  LVGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDI 133

Query: 162 TVKEDNNLSLIEYELVNV 177
           TVK+DNNLSLIEYELV+V
Sbjct: 134 TVKDDNNLSLIEYELVSV 151

BLAST of CsGy2G016990 vs. TAIR10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-49
Identity = 97/128 (75.78%), Postives = 107/128 (83.59%), Query Frame = 0

Query: 53  PVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFT 112
           PVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+FT
Sbjct: 55  PVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACILFT 114

Query: 113 ARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLIEY 172
           ARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA+ TVKEDNNLSL+EY
Sbjct: 115 ARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEY 174

Query: 173 ELVNVVEE 180
           ELVNVVEE
Sbjct: 175 ELVNVVEE 182

BLAST of CsGy2G016990 vs. TAIR10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-45
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 0

Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 110
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 111 TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 170
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 171 NLSLIEYELVNV 177
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

BLAST of CsGy2G016990 vs. TAIR10
Match: AT1G03810.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-41
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 0

Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNT---KMVLQKGRPDGPQARQMRIAECLVGDETGM 110
           RKPVF KVDQL+PGTSGHTL VKV+ +   K  ++K           RIAECL+GD+TG 
Sbjct: 15  RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTGC 74

Query: 111 IIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLS 170
           I+FTARNDQVDLMK GAT+ LRNAKID+FK +MR+AVDRWGR+E+T P +F V   NNLS
Sbjct: 75  ILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLS 134

Query: 171 LIEYELV 175
           L+EYE++
Sbjct: 135 LVEYEVI 141

BLAST of CsGy2G016990 vs. Swiss-Prot
Match: sp|O49453|Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.4e-44
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 0

Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 110
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 111 TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 170
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 171 NLSLIEYELVNV 177
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A1S3BA24|A0A1S3BA24_CUCME (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A0A0LNA1|A0A0A0LNA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A151TGI4|A0A151TGI4_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012448 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A151TGI6|A0A151TGI6_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012449 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.9e-66
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGM+IFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

BLAST of CsGy2G016990 vs. TrEMBL
Match: tr|A0A2C9UT31|A0A2C9UT31_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G028600 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0

Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESK GLRKPVFTKVDQLRPGTSGHTLTVKVV+ KMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKSGLRKPVFTKVDQLRPGTSGHTLTVKVVSAKMVLQKGRPDGPQIRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEG+TI LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004142984.14.0e-70100.00PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 P... [more]
XP_022951207.12.2e-6897.81uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch... [more]
XP_022131585.13.7e-6897.08uncharacterized protein At4g28440-like [Momordica charantia][more]
XP_022961781.16.3e-6897.81uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch... [more]
XP_022996548.11.4e-6797.08uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 unchar... [more]
Match NameE-valueIdentityDescription
AT1G23750.16.3e-6282.48Nucleic acid-binding, OB-fold-like protein[more]
AT1G10590.32.1e-5778.99Nucleic acid-binding, OB-fold-like protein[more]
AT2G33845.11.6e-4975.78Nucleic acid-binding, OB-fold-like protein[more]
AT4G28440.12.4e-4566.67Nucleic acid-binding, OB-fold-like protein[more]
AT1G03810.13.6e-4162.99Nucleic acid-binding, OB-fold-like protein[more]
Match NameE-valueIdentityDescription
sp|O49453|Y4844_ARATH4.4e-4466.67Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BA24|A0A1S3BA24_CUCME2.6e-70100.00uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|A0A0A0LNA1|A0A0A0LNA1_CUCSA2.6e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1[more]
tr|A0A151TGI4|A0A151TGI4_CAJCA3.0e-6693.43Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012448 ... [more]
tr|A0A151TGI6|A0A151TGI6_CAJCA3.9e-6692.70Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012449 ... [more]
tr|A0A2C9UT31|A0A2C9UT31_MANES1.1e-6594.16Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G028600 PE=4 SV=... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G016990.1CsGy2G016990.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 65..168
e-value: 1.5E-38
score: 133.1
NoneNo IPR availablePANTHERPTHR31472FAMILY NOT NAMEDcoord: 42..179
NoneNo IPR availablePANTHERPTHR31472:SF1EXPRESSED PROTEIN-RELATEDcoord: 42..179
NoneNo IPR availableCDDcd04491SoSSB_OBFcoord: 69..152
e-value: 8.60956E-17
score: 70.7297
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 47..176