CsGy2G016990.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G016990.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Nucleic acid-binding%2C OB-fold-like protein
Location	Chr2 : 27243945 .. 27249670 (-)
Sequence length	540

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTAAGAACCATTCATTCACTTTGAGAAGCATTTTATGAGGTAGAAGTCTCTTTGAGAAATGCGTAAGGTGGAAAATTGGTAATGGTAGGCACATCATCATAGATGAGATAAATGACTTTTTCATGAAGATTCGGGAGGTTCAATGTTGGTTAATGATGATTTTAAGGGGATAGAGAGTTTTGTGCCTATTGATTCAAGTGGAAATTGAAATGAACATTTAATAAAATCTTATTTCATCTAGACGGATGTCATTTCTATTATTATTATTTTTTTAAGGAATCTCGAATATAATTTTTGGTGGTTTTGAGTTCTAAAGGCATGTTTTTTTTTAAAGAAAATTGCTTATTACCTTAGCATGGGTGCTAGAGATTCTTTTGAGGCCTCTTCATCAAATCAGAAAAATCAAAAGAAGAGATGGAAAGTTCTTTGGAATTCAGAGCCCTCCCTAAAACAAAAATCTGTGCATGGAGAATTTCAAAATATGTTATTTCCTTCAAGTTGAATTTATAGAGGAAGGGAATCTCTAGCGATCATTGTTGTCTCTTCTGCAAGAATTGTGAGAAGAAGTGCAAGTCCTTCTACGTCCAAAGGAAAGGAGGTTCAAAGATTTGGAATCATTTTTTCATCCTTATGGTGGCCCATTTTTTATTGCAAAAATAGTGAGGATCCTCTGTTGTTGTACGAATGATATTAAGAAGATTATTTTTTATTTGGTGGGTGAATTTGGTTGGGTTGAAATTGGTGGGTTTTGAGAACAACCTCTTCTAGTTAGAATTTTGTATTAATTATGCGTGAAATGCATGTCAAGTTACTATTTGTGGGTGCATCCTCCCCGTAATTAAAAATTAAGTGTTGATGCTTCTTGGTGTGATAATGTTGAGTGGAATGGTGCGAACTAGATTATTCGTGGGCTCGAGTCCTTGATCGAAGTGGACTTCAAAAGTTGTATAAACACTAAACGTGGGAGCTTTGTTGATGCATTTCGAGTATTTTGGTGCCATCGGTGACTAAAAATCTAGCTCATACGACACTATTTATGCTTTGTTGAACCTGGATCATGATCTGTTTGTGTTATGAATCTTTCTTGTAATGTTTGTATGTTAGCTAATACCTTCAAATCTTTCTTGCAATGTTCGTACGTTAGCTAGTTTCGCATTTTTTTGGGAAAGATATTTTCGCTTTTGTCTTCTCTTTTTTGTTGTGGGTAGTTGTGGTTGCAGTTGTTCCCTAAAAAAATAATTTTCCCATTATTTTAAACGATAAAAGTTAAAACGACTTGAATCTTTTGCCAATTTTATTTTTTGAAACCCCGAGTTACAGCATCGAAGGTTAAATTTACGGGTCAGACACGTGGTCGATCACGATTAAAGTCCTCTGGCGATCAATAATCGACGGTTGATATTTTCACAGCAACTTTATTTCTTTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCCTTTTCCCCCTTCGTCTTTGCCTCCGTCCACCACTGGTAAAAGGTGATTTCTAAACCCTAAAATTTCAGCTTCGTTTATTCTTATACCTTTTATTTTCTAATTTGTATTTCTCCTCGCTTCTCTAATTTTATGGGCACTCAGGTTGCGATTTTGTGGTAATCGTTTGTTTTGCATATTCTTTTAATGATTCTCATTTAATACTAATTTACGACATTCGAGTGTGAAATTTTATATAGAGAATGATGAGAGGTACTTGCTGAAAATCAAATTCGATGACTTAATACTATATTTTGTTTTTAGGTTTAAGGATGCTAATAAGCATCGTTTTAGTACGCTCCATTTCCTTAAGTCCCACATTAAGCCTCTAGTTGTTTGATTATCTTTCATTTGATTCACGAAAATTTTCGGAAAGACAAGTTATGAAAAACTATTTATGTCGTTGGATGTGATAATTAGCATCGAGATTAGTCGGAGGTGCTCGGAGATTTGACGATATTCAAAATATAAATAATAATTTGGCACTTTGCTTTTCAATCTTATTGTGTGTTTCGTTGAATCGACAATTTGAATTTTTTGTCCATTATCTATTTATTTTCTGTCAGTCATGAATATTTTATCAATCCCTGGCGTTCCATCCACCTCGATGATATACTGATAGCGTGTGTGTGTGCGTTTTTAAAAAAATCACAACTTCATTCTGTTATCTAACTGTATTCTTATAGACTACATGTTGTCTAACTGTTTTCTTATTGTTTGTTATTGGCACAATTAGGGATTAGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGGTAAATTTCCACAATATTTGAGGAGCCTGCACCATTTGTGTTTATTTGTATCTTGTATGAAGCATGCGAACTTTCTTCTTTATGCTTACTTCTGTACATAATACTAAATATTTGTCGTTAGTTAGGTTCTTTATATCCACCTGCTGCTGGTGCATGCAAGAGTTTTCATAACTGATTTGTCTCACCCCCTGTCCTCAATGTATTTACATATCTCACTGTAAAAAGTTGTAAGCTGTTATGATATATCAACTTCCTACTAGCAATATTTCATAAAGGTTGGAGACATTTTATTGTTATAAAATCGTGGACCTTTCCTTTTCAGACAAGAAACTAGACTTTATCTAAATGCTGGCACATATGGAGGCTGAGATACTAAGCCAATTGAAATAAGTCATCCATACAAATATTACCATCTAAAGAACTGAGTGCCTACTTTGTTTGTTATATATATTAGTTAGCGTAATGGCTTATAATAATAGTTGGATAATCACTTCAATAGTTCTGTTACATAGCGATGGATTAATGTATATGTCTCCCATTTGAAATAATAAGCTCTTTGCTGAGTCTTGAGAATAATAGATTTTGGAGGAATCATTTGTATTGCTTCGATTATGATCTTATTAGGTGTTGAATGATATAATATTTATTTTTCCTTGCATCTATCAAATTAAGTTTTTGGGTCAATTGGTGATTTAATATCGGAGCAGGTGATCTAGGACTACAAGGAGGTTTTATTTCCTTCCTAACTAAAATTGGTTTCTACTTGTTGAGTCTTTTTCATATATCAAGCCCACAAGTGAGGGGGAGTTGAATGATATAATATTAAATTTGGACTCACCCATCAGCTTAAGTTTTTGGGTCAGTTGGTGATTTAAGATTAGGGAAATTTTGGTTTTGGAAGATCCATCAATTGTAGTAAATGTTATTTCTATCTTGACTTATTTTATCTGTTGGTTTCATATGTATATTTTCATGTTAGGATCTGATTAGGTTGTTGCATGTCACTGAGTGCGCACTATTGTCAATACTGTATGTTAATCTAGGAAGCATGCACACGTCCAAAATGATGTAAGTGTCAGTGCCGGACATGTGTCCGACATCGATACGTCCCAACACGTCCATGCCACGAAATTCATGTTGCTTTTTATTTATTATTTTCCAATTTTCGACACGTGAAGACACACAAAGACCCTGCATCAGACACACATAGACACATAAGAAACCCAAACCTTTCAAACCAGTAGGTGGCGGAGAGATGGTGGTCGGCATTGGCATGTTTGAGATCGAGCGGTGAAGGGAGAGCCTTATTACATCCATTTCATGTGATTGGCTATGCGTGACTGTGTGGGAGAAGGGGGAAGAGCAGAATCGGGGGAGAAAGTGGTTGTGTGGGAGAAGAGGAGAGCAGTGAAGGATAGAAAGGGAAATATTAGGATTAGGGTTTTAAATTTTAAATGGGCTTTGGGGCCCTTTTTAAAACTTAAATGGGCTTTTCCATTCCAAGTCGTGGGTTTATTTCTCATGAACAGGTTTTTATTTCATTTTTTTTCCTTCTTTTTTTAAAAAATTAATGCTCTTGTATTTTTCTTTTGTAGTCTTTTAGTAAGTCAGTTATTTTTAATAATCAATAACACTTGTATTATATATATTATGTGTGTGTGTATGTTTATATGTATATATAGATAGATATACATACATATATGGGTGTGTATTAAAAAAACAGTGTGTGGGTGTCGTGTCCATTTTTAGAAATTGCTGCGTCGCCATGTTGTGTCGATATCTCATGTCCGTGCTTCATAGATGTTAATTGAATTCCTAAGAACATGTAGATGCTTTAGTAATTTTGGAGAAACTGTCAGCGCCTAGGACTCTAGACAGCTCCACTTAGAAATATACGTTGTGTGATTGTTATGTTTGTTACAGTGTCTATCAAGTGCATCTTAACTAACCCCTGTTTCAATTACGCTTATTGTCTATTAGTTATATTGACCAACCTTATCATTTTTTCATATATAGATTCCTTCCAATTATTCACTTGCCATGTTCTAAAACTTATTTTACGATAGTATCCATAACCTCATTTAAATTGTATTAGTTGAGTGGTTTCTCATCATGCGTCAATCCTTTTCATTTTCTATTACACTTTTTTCCCCATTTGTGCCAAAAAACATCATATTAATAATTATTTTCCTAGAGTTTTCCACGTGCAATGTTCTATAACTTGTTTTACTATAATATTTATTACCTTATTTAAATTGTATTAAATTATGTTTTTTTTAATCATGTGTTAATTTTTCATTTTCATTTTCTGTCACTTTTTTTGACATTACATTTATTATCCTTCGAGTAGAAGATTGCTATACTTGGTTATTACCAAGCTATCAAAAATAAAGAAGAATGAGAATAAAAGAAGCTGTTGTTGTGGTTTTGTTTCTTTCCTCCTGAACAAGAATAGATAAAAGTTGTGAATTGTTGAATGGAAAAGTGGTTAATAACACCATAACGTTGTAGTTCTAGTTGCAAAGAGAACTATTCCTCTTACATAGGCAGGTGAAAGAGGTGGACAAGAATGGAATTTTTTTCAGGCTAGGTTCATGGTATGGCAGAGGAGAATGAGTGGTCCTGGAATGGGATAGTTGTATATAGATGGTTTTTCTCTTAGATCAAACTCATTGTTGTTAAATATATCCGTTTTTAACTTTTACATATACCCTATCTTTGTTCATGAGATTAGTAAATTACCTCATCTTGAACTCACTTTAAAGGTCACGAAAATTTTATTAGTTCATTGTACACGATTTTAGCTCCAAGTGATCCCTATACTGTTTGATTAACCAGTCCTTGGAGTTGAATGTGTTGGTGGACATATTTTAAATGGCATAAAGTTTCCATAACTCATTTACTCGTATGTCTTTGATATCTTTCATGTAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

mRNA sequence

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Coding sequence (CDS)

ATGCCTGCGAAGCCAAGCTGGCATATGTGCAGAAATGTTGATAATCTCTCAGGCAAAGTTCCAAAAGAGTGGTACTTCCCCAGCAAGTCATTTCTTACGGTTCTTTGGGTATTCGTATTCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCAGGCACCAGTGGCCATACTCTTACAGTCAAAGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCCGAATGCTTAGTGGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGGCTTGCTGTAGACAGGTGGGGTCGAGTTGAAGTTACTGAGCCTGCCAATTTCACTGTTAAGGAAGATAACAATCTTTCGCTCATTGAATATGAGCTCGTGAATGTTGTGGAAGAGTGA

Protein sequence

MPAKPSWHMCRNVDNLSGKVPKEWYFPSKSFLTVLWVFVFGEMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLIEYELVNVVEE

Homology

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BLAST of CsGy2G016990.1 vs. NCBI nr
Match: XP_004142984.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_008444319.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_011649474.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >KGN62287.1 hypothetical protein Csa_2G348250 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990.1 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           +NNLSLIEYELVNVVEE
Sbjct: 121 ENNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990.1 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990.1 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 6.3e-68
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990.1 vs. NCBI nr
Match: XP_022996548.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNV+EE
Sbjct: 121 DNNLSLIEYELVNVMEE 137

[Close]

BLAST of CsGy2G016990.1 vs. TAIR10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 234.2 bits (596), Expect = 6.3e-62
Identity = 113/137 (82.48%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 43  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLV 102
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 103 GDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVK 162
           GDETG+I+FTARNDQVDLMKEG+T+TLRNAKIDM+KGSMRLAVD+WGRVEVTEPA+F VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 163 EDNNLSLIEYELVNVVE 179
           ED N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

[Close]

BLAST of CsGy2G016990.1 vs. TAIR10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 109/138 (78.99%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 42  EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAEC 101
           +MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAEC
Sbjct: 14  KMAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAEC 73

Query: 102 LVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPANF 161
           LVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP + 
Sbjct: 74  LVGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDI 133

Query: 162 TVKEDNNLSLIEYELVNV 177
           TVK+DNNLSLIEYELV+V
Sbjct: 134 TVKDDNNLSLIEYELVSV 151

[Close]

BLAST of CsGy2G016990.1 vs. TAIR10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-49
Identity = 97/128 (75.78%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 53  PVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFT 112
           PVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+FT
Sbjct: 55  PVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACILFT 114

Query: 113 ARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLSLIEY 172
           ARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA+ TVKEDNNLSL+EY
Sbjct: 115 ARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEY 174

Query: 173 ELVNVVEE 180
           ELVNVVEE
Sbjct: 175 ELVNVVEE 182

[Close]

BLAST of CsGy2G016990.1 vs. TAIR10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-45
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 110
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 111 TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 170
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 171 NLSLIEYELVNV 177
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CsGy2G016990.1 vs. TAIR10
Match: AT1G03810.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-41
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNT---KMVLQKGRPDGPQARQMRIAECLVGDETGM 110
           RKPVF KVDQL+PGTSGHTL VKV+ +   K  ++K           RIAECL+GD+TG 
Sbjct: 15  RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTGC 74

Query: 111 IIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLS 170
           I+FTARNDQVDLMK GAT+ LRNAKID+FK +MR+AVDRWGR+E+T P +F V   NNLS
Sbjct: 75  ILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLS 134

Query: 171 LIEYELV 175
           L+EYE++
Sbjct: 135 LVEYEVI 141

[Close]

BLAST of CsGy2G016990.1 vs. Swiss-Prot
Match: sp|O49453|Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.4e-44
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 51  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 110
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 111 TGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDN 170
           TG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 171 NLSLIEYELVNV 177
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CsGy2G016990.1 vs. TrEMBL
Match: tr|A0A1S3BA24|A0A1S3BA24_CUCME (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990.1 vs. TrEMBL
Match: tr|A0A0A0LNA1|A0A0A0LNA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]

BLAST of CsGy2G016990.1 vs. TrEMBL
Match: tr|A0A151TGI4|A0A151TGI4_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012448 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CsGy2G016990.1 vs. TrEMBL
Match: tr|A0A151TGI6|A0A151TGI6_CAJCA (Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012449 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.9e-66
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MA+SKPGLRKPVFTKVDQLRPGTSGHTLTVKVVN KMV+QKGRPDGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNAKMVMQKGRPDGPQSRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGM+IFTARNDQVDLMKEGAT+ LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMVIFTARNDQVDLMKEGATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVV E
Sbjct: 121 DNNLSLIEYELVNVVVE 137

[Close]

BLAST of CsGy2G016990.1 vs. TrEMBL
Match: tr|A0A2C9UT31|A0A2C9UT31_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G028600 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 43  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 102
           MAESK GLRKPVFTKVDQLRPGTSGHTLTVKVV+ KMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKSGLRKPVFTKVDQLRPGTSGHTLTVKVVSAKMVLQKGRPDGPQIRQMRIAECLVG 60

Query: 103 DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 162
           DETGMIIFTARNDQVDLMKEG+TI LRNAKIDMFKGSMRLAVD+WGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFTVKE 120

Query: 163 DNNLSLIEYELVNVVEE 180
           DNNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

The following BLAST results are available for this feature:

BLAST of CsGy2G016990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142984.1	4.0e-70	100.00	PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 P...	[more]
XP_022951207.1	2.2e-68	97.81	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch...	[more]
XP_022131585.1	3.7e-68	97.08	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_022961781.1	6.3e-68	97.81	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch...	[more]
XP_022996548.1	1.4e-67	97.08	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 unchar...	[more]

BLAST of CsGy2G016990.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23750.1	6.3e-62	82.48	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	2.1e-57	78.99	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	1.6e-49	75.78	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	2.4e-45	66.67	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	3.6e-41	62.99	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CsGy2G016990.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49453\|Y4844_ARATH	4.4e-44	66.67	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of CsGy2G016990.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BA24\|A0A1S3BA24_CUCME	2.6e-70	100.00	uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0LNA1\|A0A0A0LNA1_CUCSA	2.6e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1	[more]
tr\|A0A151TGI4\|A0A151TGI4_CAJCA	3.0e-66	93.43	Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012448 ...	[more]
tr\|A0A151TGI6\|A0A151TGI6_CAJCA	3.9e-66	92.70	Uncharacterized protein At4g28440 family OS=Cajanus cajan OX=3821 GN=KK1_012449 ...	[more]
tr\|A0A2C9UT31\|A0A2C9UT31_MANES	1.1e-65	94.16	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G028600 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G016990	CsGy2G016990	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G016990.1	CsGy2G016990.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G016990.1.CDS.3	CsGy2G016990.1.CDS.3	CDS
CsGy2G016990.1.CDS.2	CsGy2G016990.1.CDS.2	CDS
CsGy2G016990.1.CDS.1	CsGy2G016990.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G016990.1.exon.3	CsGy2G016990.1.exon.3	exon
CsGy2G016990.1.exon.2	CsGy2G016990.1.exon.2	exon
CsGy2G016990.1.exon.1	CsGy2G016990.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 65..168 e-value: 1.5E-38 score: 133.1
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 42..179
None	No IPR available	PANTHER	PTHR31472:SF1	EXPRESSED PROTEIN-RELATED	coord: 42..179
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 69..152 e-value: 8.60956E-17 score: 70.7297
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 47..176