Cp4.1LG06g03190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g03190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaC08g08060D protein
LocationCp4.1LG06 : 1745828 .. 1746061 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTCGTCGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTACGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

mRNA sequence

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTCGTCGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTACGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Coding sequence (CDS)

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTCGTCGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTACGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Protein sequence

MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
Homology
[Close]
BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHSTDFRYDPSSYALNFEDEQ+R DDE+PIRDF
Sbjct: 44  MTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDF 103

Query: 61  ASRLPPSPP 69
            SRLP SPP
Sbjct: 104 TSRLPASPP 112

[Close]
BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: W9RJD0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-16
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 2   APELPKLRGLCRNLVARIGRSCRRYH--HSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 61
           A ELP++R  CRNL++R+GRS R +H  +S+DF YD SSYALNFEDE  RDD+ +P+R+F
Sbjct: 59  AHELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNF 118

Query: 62  ASRLPPSPPAS 71
           +SRLP SPP S
Sbjct: 119 SSRLPVSPPPS 129

[Close]
BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A0J8BQY4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192700 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 

Query: 8   LRGLCRNLVARIGRSCRRYHH-----STDFRYDPSSYALNFEDEQVRDDDEYPIRDFASR 67
           L+G CR+L++RIG +  R HH     STDFRYDP SY+LNF D    D D++P R+F SR
Sbjct: 76  LKGKCRSLMSRIGTTTPRGHHHRKSHSTDFRYDPLSYSLNF-DNDASDVDDFPFRNFISR 135

[Close]
BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A0K9PQ45_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_186G00230 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.9e-10
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1 

Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDD------EYP 61
           A ELP ++G CR L++RIG++  R HHSTDFRYDP SYALNF+     D+D       Y 
Sbjct: 94  AQELPGIQGKCRGLISRIGKN--RRHHSTDFRYDPFSYALNFDGGPDFDEDGDGSSSPYK 153

Query: 62  IRDFASRLPPSP 68
            + F+SRLP SP
Sbjct: 154 YKSFSSRLPASP 163

[Close]
BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A022PWP4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013962mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1 

Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEY-PIRDFA 61
           A +LP+++G CRN ++R+GR   R H S +F YDP SYALNF+D+Q+   D+Y    +F 
Sbjct: 55  ASDLPEIKGKCRNFISRMGR--HRRHSSAEFSYDPLSYALNFDDDQLSPHDDYGTTTNFT 114

Query: 62  SRLPPSPP 69
           +RLP SPP
Sbjct: 115 ARLPVSPP 120

[Close]
BLAST of Cp4.1LG06g03190 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-09
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1 

Query: 5   LPKLRGLCRNLVARIG----------RSCRRYHHSTDFRYDPSSYALNFEDEQVRDD-DE 64
           L K    C++L+ R+G          +  RR  H+ DF YDPSSYALNF+     D+ D 
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRR--HTADFHYDPSSYALNFDKGDEDDNIDR 129

Query: 65  YPIRDFASRLPPSPPASQR 73
           +P+R+F++RLP SPP+S +
Sbjct: 130 FPLRNFSARLPHSPPSSAK 146

[Close]
BLAST of Cp4.1LG06g03190 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-08
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 1 

Query: 7   KLRGLCRNLVARIGRSCRR-----------YHHST----DFRYDPSSYALNFEDEQVRDD 66
           +LR  CR + +RI  +CR            +HHS     DF YDP SYALNFED  VR D
Sbjct: 64  ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFED-NVRAD 123

Query: 67  DEYPIRDFASRLPPSPPASQR 73
           D+    +F +RLP SP    R
Sbjct: 124 DDGSFPNFTARLPQSPVTKTR 143

[Close]
BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|659104300|ref|XP_008452891.1| (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF
Sbjct: 43  MTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDF 102

Query: 61  ASRLPPSPPASQRFM 75
            SRLP SPP     M
Sbjct: 103 TSRLPASPPPPVNLM 117

[Close]
BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHSTDFRYDPSSYALNFEDEQ+R DDE+PIRDF
Sbjct: 44  MTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDF 103

Query: 61  ASRLPPSPP 69
            SRLP SPP
Sbjct: 104 TSRLPASPP 112

[Close]
BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|703111493|ref|XP_010099873.1| (hypothetical protein L484_008530 [Morus notabilis])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 2   APELPKLRGLCRNLVARIGRSCRRYH--HSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 61
           A ELP++R  CRNL++R+GRS R +H  +S+DF YD SSYALNFEDE  RDD+ +P+R+F
Sbjct: 59  AHELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNF 118

Query: 62  ASRLPPSPPAS 71
           +SRLP SPP S
Sbjct: 119 SSRLPVSPPPS 129

[Close]
BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFAS 61
           A +LP++R  CRNL++RIG+  RR+++S +F YDPSSYALNFEDE  R +DE+P+RDF+S
Sbjct: 66  AHDLPEIRDRCRNLISRIGKG-RRHYNSGEFSYDPSSYALNFEDES-RYNDEFPLRDFSS 125

Query: 62  RLP--PSPP 69
           RLP  PSPP
Sbjct: 126 RLPASPSPP 132

[Close]
BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 4   ELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDD--DEYPIRDFAS 63
           ELP+++  CRNL++RIG+  R   HS DFRYDP SY+LNF DE + D   D++P+R+F++
Sbjct: 56  ELPEIKEKCRNLISRIGKGRR---HSGDFRYDPLSYSLNF-DEGIDDTQADDFPLRNFSA 115

Query: 64  RLPPSPPAS 71
           RLP SPP S
Sbjct: 116 RLPASPPMS 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g03190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4E2_CUCSA9.0e-2278.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1[more]
W9RJD0_9ROSA7.4e-1661.97Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1[more]
A0A0J8BQY4_BETVU4.6e-1056.92Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192700 PE=4 S... [more]
A0A0K9PQ45_ZOSMR7.9e-1052.78Uncharacterized protein OS=Zostera marina GN=ZOSMA_186G00230 PE=4 SV=1[more]
A0A022PWP4_ERYGU1.3e-0950.00Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013962mg PE=4 SV=1[more]
BLAST of Cp4.1LG06g03190 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35090.16.0e-0941.77 unknown protein[more]
AT5G11070.16.6e-0843.21 unknown protein[more]
BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659104300|ref|XP_008452891.1|4.4e-2273.33PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo][more]
gi|700200304|gb|KGN55462.1|1.3e-2178.26hypothetical protein Csa_4G652740 [Cucumis sativus][more]
gi|703111493|ref|XP_010099873.1|1.1e-1561.97hypothetical protein L484_008530 [Morus notabilis][more]
gi|1009136950|ref|XP_015885798.1|1.7e-1362.32PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba][more]
gi|720031112|ref|XP_010265711.1|2.3e-1055.07PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g03190.1Cp4.1LG06g03190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 1..74
score: 1.8
NoneNo IPR availablePANTHERPTHR33168:SF4SUBFAMILY NOT NAMEDcoord: 1..74
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g03190Cucsa.271790Cucumber (Gy14) v1cgycpeB0711
Cp4.1LG06g03190CmaCh01G014860Cucurbita maxima (Rimu)cmacpeB502
Cp4.1LG06g03190CmaCh05G003650Cucurbita maxima (Rimu)cmacpeB785
Cp4.1LG06g03190CmoCh01G015400Cucurbita moschata (Rifu)cmocpeB460
Cp4.1LG06g03190CmoCh05G003690Cucurbita moschata (Rifu)cmocpeB738
Cp4.1LG06g03190Cla022345Watermelon (97103) v1cpewmB760
Cp4.1LG06g03190Cla021000Watermelon (97103) v1cpewmB766
Cp4.1LG06g03190Csa4G652740Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g03190MELO3C016989Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g03190ClCG05G016610Watermelon (Charleston Gray)cpewcgB701
Cp4.1LG06g03190ClCG08G013530Watermelon (Charleston Gray)cpewcgB713
Cp4.1LG06g03190CSPI04G26530Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g03190Lsi04G020990Bottle gourd (USVL1VR-Ls)cpelsiB636
Cp4.1LG06g03190MELO3C016989.2Melon (DHL92) v3.6.1cpemedB867
Cp4.1LG06g03190MELO3C030306.2Melon (DHL92) v3.6.1cpemedB853
Cp4.1LG06g03190CsaV3_4G036890Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g03190Bhi09G002443Wax gourdcpewgoB0997
Cp4.1LG06g03190Bhi04G000018Wax gourdcpewgoB0980
Cp4.1LG06g03190Carg02860Silver-seed gourdcarcpeB0906
Cp4.1LG06g03190Carg09347Silver-seed gourdcarcpeB0204
Cp4.1LG06g03190Carg00434Silver-seed gourdcarcpeB0948
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g03190Cp4.1LG11g03310Cucurbita pepo (Zucchini)cpecpeB134
Cp4.1LG06g03190Cp4.1LG02g04030Cucurbita pepo (Zucchini)cpecpeB467
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g03190Cucumber (Chinese Long) v3cpecucB0958
Cp4.1LG06g03190Cucumber (Chinese Long) v3cpecucB0962
Cp4.1LG06g03190Wax gourdcpewgoB1005
Cp4.1LG06g03190Cucurbita pepo (Zucchini)cpecpeB370
Cp4.1LG06g03190Cucurbita pepo (Zucchini)cpecpeB498
Cp4.1LG06g03190Cucumber (Gy14) v1cgycpeB0442
Cp4.1LG06g03190Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g03190Cucurbita maxima (Rimu)cmacpeB100
Cp4.1LG06g03190Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g03190Cucurbita moschata (Rifu)cmocpeB136
Cp4.1LG06g03190Cucurbita moschata (Rifu)cmocpeB173
Cp4.1LG06g03190Wild cucumber (PI 183967)cpecpiB774
Cp4.1LG06g03190Cucumber (Chinese Long) v2cpecuB772
Cp4.1LG06g03190Bottle gourd (USVL1VR-Ls)cpelsiB643
Cp4.1LG06g03190Bottle gourd (USVL1VR-Ls)cpelsiB651
Cp4.1LG06g03190Melon (DHL92) v3.5.1cpemeB718
Cp4.1LG06g03190Cucumber (Gy14) v2cgybcpeB256
Cp4.1LG06g03190Cucumber (Gy14) v2cgybcpeB257
Cp4.1LG06g03190Cucumber (Gy14) v2cgybcpeB562