Carg02860 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02860
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Interleukin-2 receptor subunit beta like
Location	Cucurbita_argyrosperma_scaffold_008 : 447394 .. 447627 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

mRNA sequence

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Coding sequence (CDS)

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Protein sequence

MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK

Homology

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 47  MAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 106

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S+R   AK
Sbjct: 107 SRLPASPPTSRRLSPAK 123

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata])

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 48  MAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 107

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S R   AK
Sbjct: 108 SRLPASPPTSPRLSPAK 124

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P++RG+CRNLVARIGR  RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 48  MAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 107

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S+R   AK
Sbjct: 108 SRLPASPPTSRRLSPAK 124

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 7.8e-23
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFAS 61
           A E  +LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDE  R DD++PIRDFAS
Sbjct: 51  ASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFAS 110

Query: 62  RLPPSPPASQRFMAAK 78
           RLP SP +S  F  AK
Sbjct: 111 RLPASPHSSPIFQPAK 126

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_008452891.1 (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-22
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF
Sbjct: 43  MTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDF 102

Query: 61  ASRLPPSPPASQRFM 75
            SRLP SPP     M
Sbjct: 103 TSRLPASPPPPVNLM 117

[Close]

BLAST of Carg02860 vs. TAIR10
Match: AT5G35090.1 (unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.8e-09
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 5   LPKLRGLCRNLVARIGRSCRRY--------HHSTDFRYDPSSYALNFEDEQVRDD-DEYP 64
           L K    C++L+ R+G               H+ DF YDPSSYALNF+     D+ D +P
Sbjct: 70  LSKSHEKCKSLIHRMGGGVXXXXXXXXXIRRHTADFHYDPSSYALNFDKGDEDDNIDRFP 129

Query: 65  IRDFASRLPPSPPASQR 73
           +R+F++RLP SPP+S +
Sbjct: 130 LRNFSARLPHSPPSSAK 146

[Close]

BLAST of Carg02860 vs. TAIR10
Match: AT5G11070.1 (unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-06
Identity = 32/81 (39.51%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 7   KLRGLCRNLVARIGRSCRR---------------YHHSTDFRYDPSSYALNFEDEQVRDD 66
           +LR  CR + +RI  +CR                  +  DF YDP SYALNFED  VR D
Sbjct: 64  ELRDRCRRVKSRIKVTCRNNXXXXXXXXXXXXXXQSYPGDFSYDPLSYALNFED-NVRAD 123

Query: 67  DEYPIRDFASRLPPSPPASQR 73
           D+    +F +RLP SP    R
Sbjct: 124 DDGSFPNFTARLPQSPVTKTR 143

[Close]

BLAST of Carg02860 vs. TrEMBL
Match: tr|A0A1S3BVQ9|A0A1S3BVQ9_CUCME (uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-22
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF
Sbjct: 43  MTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDF 102

Query: 61  ASRLPPSPPASQRFM 75
            SRLP SPP     M
Sbjct: 103 TSRLPASPPPPVNLM 117

[Close]

BLAST of Carg02860 vs. TrEMBL
Match: tr|A0A0A0L4E2|A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHSTDFRYDPSSYALNFEDEQ+R DDE+PIRDF
Sbjct: 44  MTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDF 103

Query: 61  ASRLPPSPP 69
            SRLP SPP
Sbjct: 104 TSRLPASPP 112

[Close]

BLAST of Carg02860 vs. TrEMBL
Match: tr|W9RJD0|W9RJD0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 2   APELPKLRGLCRNLVARIGRSCRRYH--HSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 61
           A ELP++R  CRNL++R+GRS R +H  +S+DF YD SSYALNFEDE  RDD+ +P+R+F
Sbjct: 59  AHELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNF 118

Query: 62  ASRLPPSPPAS 71
           +SRLP SPP S
Sbjct: 119 SSRLPVSPPPS 129

[Close]

BLAST of Carg02860 vs. TrEMBL
Match: tr|A0A251URC9|A0A251URC9_HELAN (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0141561 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-10
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 4   ELPKLRGLCRNLVARIGRSCRRYHH-----STDFRYDPSSYALNFEDEQVRDDDEYPIRD 63
           +LP+++  CRNL++RIG S    HH     STDF YDP SYALNFE+E  +DD   P+ +
Sbjct: 58  DLPEIKYKCRNLLSRIGNSNGVQHHRRRRSSTDFSYDPLSYALNFEEESFQDD--APLNN 117

Query: 64  FASRLPPSPPAS 71
           F SRLP SPP S
Sbjct: 118 FVSRLPSSPPRS 127

[Close]

BLAST of Carg02860 vs. TrEMBL
Match: tr|A0A1U8AF97|A0A1U8AF97_NELNU (uncharacterized protein LOC104603387 OS=Nelumbo nucifera OX=4432 GN=LOC104603387 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-10
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 4   ELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDD--DEYPIRDFAS 63
           ELP+++  CRNL++RIG+  R   HS DFRYDP SY+LNF DE + D   D++P+R+F++
Sbjct: 56  ELPEIKEKCRNLISRIGKGRR---HSGDFRYDPLSYSLNF-DEGIDDTQADDFPLRNFSA 115

Query: 64  RLPPSPPAS 71
           RLP SPP S
Sbjct: 116 RLPASPPMS 120

The following BLAST results are available for this feature:

BLAST of Carg02860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523424.1	2.1e-28	83.12	uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]	[more]
XP_022940408.1	3.6e-28	83.12	uncharacterized protein LOC111446022 [Cucurbita moschata]	[more]
XP_022981208.1	1.4e-27	80.52	uncharacterized protein LOC111480417 [Cucurbita maxima]	[more]
XP_022138148.1	7.8e-23	75.00	uncharacterized protein LOC111009386 [Momordica charantia]	[more]
XP_008452891.1	8.6e-22	73.33	PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo]	[more]

BLAST of Carg02860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35090.1	7.8e-09	40.26	unknown protein	[more]
AT5G11070.1	2.1e-06	39.51	unknown protein	[more]

BLAST of Carg02860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02860 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVQ9\|A0A1S3BVQ9_CUCME	5.7e-22	73.33	uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=...	[more]
tr\|A0A0A0L4E2\|A0A0A0L4E2_CUCSA	1.7e-21	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1	[more]
tr\|W9RJD0\|W9RJD0_9ROSA	1.4e-15	61.97	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008530 PE=4 SV=1	[more]
tr\|A0A251URC9\|A0A251URC9_HELAN	2.9e-10	54.17	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0141561 PE...	[more]
tr\|A0A1U8AF97\|A0A1U8AF97_NELNU	2.9e-10	55.07	uncharacterized protein LOC104603387 OS=Nelumbo nucifera OX=4432 GN=LOC104603387...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02860-RA	Carg02860-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..77
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 18..73
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 18..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02860	Cla021000	Watermelon (97103) v1	carwmB0630
Carg02860	Cla022345	Watermelon (97103) v1	carwmB0629
Carg02860	Csa4G652740	Cucumber (Chinese Long) v2	carcuB0656
Carg02860	MELO3C016989	Melon (DHL92) v3.5.1	carmeB0633
Carg02860	ClCG08G013530	Watermelon (Charleston Gray)	carwcgB0618
Carg02860	ClCG05G016610	Watermelon (Charleston Gray)	carwcgB0613
Carg02860	CSPI04G26530	Wild cucumber (PI 183967)	carcpiB0666
Carg02860	Cucsa.271790	Cucumber (Gy14) v1	carcgyB0710
Carg02860	CmaCh05G003650	Cucurbita maxima (Rimu)	carcmaB0901
Carg02860	CmaCh01G014860	Cucurbita maxima (Rimu)	carcmaB0894
Carg02860	CmoCh05G003690	Cucurbita moschata (Rifu)	carcmoB0878
Carg02860	CmoCh01G015400	Cucurbita moschata (Rifu)	carcmoB0870
Carg02860	Lsi08G012260	Bottle gourd (USVL1VR-Ls)	carlsiB580
Carg02860	Lsi04G020990	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02860	Cp4.1LG06g03190	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02860	Cp4.1LG02g04030	Cucurbita pepo (Zucchini)	carcpeB0904
Carg02860	Cp4.1LG11g03310	Cucurbita pepo (Zucchini)	carcpeB0895
Carg02860	MELO3C030306.2	Melon (DHL92) v3.6.1	carmedB0637
Carg02860	MELO3C016989.2	Melon (DHL92) v3.6.1	carmedB0642
Carg02860	CsaV3_4G036890	Cucumber (Chinese Long) v3	carcucB0667
Carg02860	Cla97C05G097600	Watermelon (97103) v2	carwmbB0659
Carg02860	Cla97C08G156930	Watermelon (97103) v2	carwmbB0665
Carg02860	Bhi04G000018	Wax gourd	carwgoB0750
Carg02860	Bhi09G002443	Wax gourd	carwgoB0754

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02860	Carg09347	Silver-seed gourd	carcarB163
Carg02860	Carg00434	Silver-seed gourd	carcarB553

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02860	Cucurbita pepo (Zucchini)	carcpeB0897
Carg02860	Silver-seed gourd	carcarB154
Carg02860	Silver-seed gourd	carcarB558
Carg02860	Cucumber (Gy14) v2	carcgybB0631
Carg02860	Cucumber (Gy14) v2	carcgybB0633
Carg02860	Cucumber (Gy14) v1	carcgyB0709
Carg02860	Cucurbita maxima (Rimu)	carcmaB0889
Carg02860	Cucurbita maxima (Rimu)	carcmaB0890
Carg02860	Cucurbita maxima (Rimu)	carcmaB0891
Carg02860	Cucurbita maxima (Rimu)	carcmaB0893
Carg02860	Cucurbita moschata (Rifu)	carcmoB0865
Carg02860	Cucurbita moschata (Rifu)	carcmoB0866
Carg02860	Cucurbita moschata (Rifu)	carcmoB0867
Carg02860	Cucurbita moschata (Rifu)	carcmoB0869
Carg02860	Cucurbita pepo (Zucchini)	carcpeB0905
Carg02860	Cucurbita pepo (Zucchini)	carcpeB0908
Carg02860	Wild cucumber (PI 183967)	carcpiB0663
Carg02860	Cucumber (Chinese Long) v2	carcuB0654
Carg02860	Cucumber (Chinese Long) v3	carcucB0665
Carg02860	Bottle gourd (USVL1VR-Ls)	carlsiB573
Carg02860	Bottle gourd (USVL1VR-Ls)	carlsiB578
Carg02860	Melon (DHL92) v3.5.1	carmeB0629
Carg02860	Watermelon (Charleston Gray)	carwcgB0612
Carg02860	Watermelon (97103) v2	carwmbB0658
Carg02860	Wax gourd	carwgoB0756