Cp4.1LG06g03190 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g03190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaC08g08060D protein
Location	Cp4.1LG06 : 1745828 .. 1746061 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTCGTCGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTACGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

mRNA sequence

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTCGTCGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTACGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Coding sequence (CDS)

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTCGTCGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTACGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Protein sequence

MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK

Homology

[Close]

BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHSTDFRYDPSSYALNFEDEQ+R DDE+PIRDF
Sbjct: 44  MTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDF 103

Query: 61  ASRLPPSPP 69
            SRLP SPP
Sbjct: 104 TSRLPASPP 112

[Close]

BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: W9RJD0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-16
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 2   APELPKLRGLCRNLVARIGRSCRRYH--HSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 61
           A ELP++R  CRNL++R+GRS R +H  +S+DF YD SSYALNFEDE  RDD+ +P+R+F
Sbjct: 59  AHELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNF 118

Query: 62  ASRLPPSPPAS 71
           +SRLP SPP S
Sbjct: 119 SSRLPVSPPPS 129

[Close]

BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A0J8BQY4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192700 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 8   LRGLCRNLVARIGRSCRRYHH-----STDFRYDPSSYALNFEDEQVRDDDEYPIRDFASR 67
           L+G CR+L++RIG +  R HH     STDFRYDP SY+LNF D    D D++P R+F SR
Sbjct: 76  LKGKCRSLMSRIGTTTPRGHHHRKSHSTDFRYDPLSYSLNF-DNDASDVDDFPFRNFISR 135

[Close]

BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A0K9PQ45_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_186G00230 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.9e-10
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDD------EYP 61
           A ELP ++G CR L++RIG++  R HHSTDFRYDP SYALNF+     D+D       Y 
Sbjct: 94  AQELPGIQGKCRGLISRIGKN--RRHHSTDFRYDPFSYALNFDGGPDFDEDGDGSSSPYK 153

Query: 62  IRDFASRLPPSP 68
            + F+SRLP SP
Sbjct: 154 YKSFSSRLPASP 163

[Close]

BLAST of Cp4.1LG06g03190 vs. TrEMBL
Match: A0A022PWP4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013962mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEY-PIRDFA 61
           A +LP+++G CRN ++R+GR   R H S +F YDP SYALNF+D+Q+   D+Y    +F 
Sbjct: 55  ASDLPEIKGKCRNFISRMGR--HRRHSSAEFSYDPLSYALNFDDDQLSPHDDYGTTTNFT 114

Query: 62  SRLPPSPP 69
           +RLP SPP
Sbjct: 115 ARLPVSPP 120

[Close]

BLAST of Cp4.1LG06g03190 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-09
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 5   LPKLRGLCRNLVARIG----------RSCRRYHHSTDFRYDPSSYALNFEDEQVRDD-DE 64
           L K    C++L+ R+G          +  RR  H+ DF YDPSSYALNF+     D+ D 
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRR--HTADFHYDPSSYALNFDKGDEDDNIDR 129

Query: 65  YPIRDFASRLPPSPPASQR 73
           +P+R+F++RLP SPP+S +
Sbjct: 130 FPLRNFSARLPHSPPSSAK 146

[Close]

BLAST of Cp4.1LG06g03190 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-08
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 1


Query: 7   KLRGLCRNLVARIGRSCRR-----------YHHST----DFRYDPSSYALNFEDEQVRDD 66
           +LR  CR + +RI  +CR            +HHS     DF YDP SYALNFED  VR D
Sbjct: 64  ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFED-NVRAD 123

Query: 67  DEYPIRDFASRLPPSPPASQR 73
           D+    +F +RLP SP    R
Sbjct: 124 DDGSFPNFTARLPQSPVTKTR 143

[Close]

BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|659104300|ref|XP_008452891.1| (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF
Sbjct: 43  MTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDF 102

Query: 61  ASRLPPSPPASQRFM 75
            SRLP SPP     M
Sbjct: 103 TSRLPASPPPPVNLM 117

[Close]

BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHSTDFRYDPSSYALNFEDEQ+R DDE+PIRDF
Sbjct: 44  MTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDF 103

Query: 61  ASRLPPSPP 69
            SRLP SPP
Sbjct: 104 TSRLPASPP 112

[Close]

BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|703111493|ref|XP_010099873.1| (hypothetical protein L484_008530 [Morus notabilis])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 2   APELPKLRGLCRNLVARIGRSCRRYH--HSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 61
           A ELP++R  CRNL++R+GRS R +H  +S+DF YD SSYALNFEDE  RDD+ +P+R+F
Sbjct: 59  AHELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNF 118

Query: 62  ASRLPPSPPAS 71
           +SRLP SPP S
Sbjct: 119 SSRLPVSPPPS 129

[Close]

BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFAS 61
           A +LP++R  CRNL++RIG+  RR+++S +F YDPSSYALNFEDE  R +DE+P+RDF+S
Sbjct: 66  AHDLPEIRDRCRNLISRIGKG-RRHYNSGEFSYDPSSYALNFEDES-RYNDEFPLRDFSS 125

Query: 62  RLP--PSPP 69
           RLP  PSPP
Sbjct: 126 RLPASPSPP 132

[Close]

BLAST of Cp4.1LG06g03190 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 4   ELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDD--DEYPIRDFAS 63
           ELP+++  CRNL++RIG+  R   HS DFRYDP SY+LNF DE + D   D++P+R+F++
Sbjct: 56  ELPEIKEKCRNLISRIGKGRR---HSGDFRYDPLSYSLNF-DEGIDDTQADDFPLRNFSA 115

Query: 64  RLPPSPPAS 71
           RLP SPP S
Sbjct: 116 RLPASPPMS 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g03190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g03190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4E2_CUCSA	9.0e-22	78.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1	[more]
W9RJD0_9ROSA	7.4e-16	61.97	Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1	[more]
A0A0J8BQY4_BETVU	4.6e-10	56.92	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192700 PE=4 S...	[more]
A0A0K9PQ45_ZOSMR	7.9e-10	52.78	Uncharacterized protein OS=Zostera marina GN=ZOSMA_186G00230 PE=4 SV=1	[more]
A0A022PWP4_ERYGU	1.3e-09	50.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013962mg PE=4 SV=1	[more]

BLAST of Cp4.1LG06g03190 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35090.1	6.0e-09	41.77	unknown protein	[more]
AT5G11070.1	6.6e-08	43.21	unknown protein	[more]

BLAST of Cp4.1LG06g03190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104300\|ref\|XP_008452891.1\|	4.4e-22	73.33	PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo]	[more]
gi\|700200304\|gb\|KGN55462.1\|	1.3e-21	78.26	hypothetical protein Csa_4G652740 [Cucumis sativus]	[more]
gi\|703111493\|ref\|XP_010099873.1\|	1.1e-15	61.97	hypothetical protein L484_008530 [Morus notabilis]	[more]
gi\|1009136950\|ref\|XP_015885798.1\|	1.7e-13	62.32	PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba]	[more]
gi\|720031112\|ref\|XP_010265711.1\|	2.3e-10	55.07	PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g03190.1	Cp4.1LG06g03190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 1..74 score: 1.8
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 1..74 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g03190	Cucsa.271790	Cucumber (Gy14) v1	cgycpeB0711
Cp4.1LG06g03190	CmaCh01G014860	Cucurbita maxima (Rimu)	cmacpeB502
Cp4.1LG06g03190	CmaCh05G003650	Cucurbita maxima (Rimu)	cmacpeB785
Cp4.1LG06g03190	CmoCh01G015400	Cucurbita moschata (Rifu)	cmocpeB460
Cp4.1LG06g03190	CmoCh05G003690	Cucurbita moschata (Rifu)	cmocpeB738
Cp4.1LG06g03190	Cla022345	Watermelon (97103) v1	cpewmB760
Cp4.1LG06g03190	Cla021000	Watermelon (97103) v1	cpewmB766
Cp4.1LG06g03190	Csa4G652740	Cucumber (Chinese Long) v2	cpecuB782
Cp4.1LG06g03190	MELO3C016989	Melon (DHL92) v3.5.1	cpemeB734
Cp4.1LG06g03190	ClCG05G016610	Watermelon (Charleston Gray)	cpewcgB701
Cp4.1LG06g03190	ClCG08G013530	Watermelon (Charleston Gray)	cpewcgB713
Cp4.1LG06g03190	CSPI04G26530	Wild cucumber (PI 183967)	cpecpiB784
Cp4.1LG06g03190	Lsi04G020990	Bottle gourd (USVL1VR-Ls)	cpelsiB636
Cp4.1LG06g03190	MELO3C016989.2	Melon (DHL92) v3.6.1	cpemedB867
Cp4.1LG06g03190	MELO3C030306.2	Melon (DHL92) v3.6.1	cpemedB853
Cp4.1LG06g03190	CsaV3_4G036890	Cucumber (Chinese Long) v3	cpecucB0969
Cp4.1LG06g03190	Bhi09G002443	Wax gourd	cpewgoB0997
Cp4.1LG06g03190	Bhi04G000018	Wax gourd	cpewgoB0980
Cp4.1LG06g03190	Carg02860	Silver-seed gourd	carcpeB0906
Cp4.1LG06g03190	Carg09347	Silver-seed gourd	carcpeB0204
Cp4.1LG06g03190	Carg00434	Silver-seed gourd	carcpeB0948

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG06g03190	Cp4.1LG11g03310	Cucurbita pepo (Zucchini)	cpecpeB134
Cp4.1LG06g03190	Cp4.1LG02g04030	Cucurbita pepo (Zucchini)	cpecpeB467

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g03190	Cucurbita pepo (Zucchini)	cpecpeB370
Cp4.1LG06g03190	Cucurbita pepo (Zucchini)	cpecpeB498
Cp4.1LG06g03190	Cucumber (Gy14) v1	cgycpeB0442
Cp4.1LG06g03190	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g03190	Cucurbita maxima (Rimu)	cmacpeB100
Cp4.1LG06g03190	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g03190	Cucurbita moschata (Rifu)	cmocpeB136
Cp4.1LG06g03190	Cucurbita moschata (Rifu)	cmocpeB173
Cp4.1LG06g03190	Wild cucumber (PI 183967)	cpecpiB774
Cp4.1LG06g03190	Cucumber (Chinese Long) v2	cpecuB772
Cp4.1LG06g03190	Bottle gourd (USVL1VR-Ls)	cpelsiB643
Cp4.1LG06g03190	Bottle gourd (USVL1VR-Ls)	cpelsiB651
Cp4.1LG06g03190	Melon (DHL92) v3.5.1	cpemeB718
Cp4.1LG06g03190	Cucumber (Gy14) v2	cgybcpeB256
Cp4.1LG06g03190	Cucumber (Gy14) v2	cgybcpeB257
Cp4.1LG06g03190	Cucumber (Gy14) v2	cgybcpeB562
Cp4.1LG06g03190	Cucumber (Chinese Long) v3	cpecucB0958
Cp4.1LG06g03190	Cucumber (Chinese Long) v3	cpecucB0962
Cp4.1LG06g03190	Wax gourd	cpewgoB1005