MELO3C016989 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016989
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative NHL repeat-containing protein
Locationchr7 : 582228 .. 582802 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATCATCACTACTCAATTCTCACCTCTCATCCATTTTTCAGTTTCCATCTTCACCATGTTCAACCACTACAATCCCTTTTCATTTACTCACAAGCTCAAATCCTCAATCCCTTCTTGTTTCCGCCCCGATCACGATGCCGAATTACACGAAAACGAAGACGATAATCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGGATGTGCCGGAGTCTCGTCGCTCGGATCAGTTGGCCGAGTCGCCGACGCTACCATCACTCTGCTGATTTTCGATACGATCCTTCCAGCTATGCCCTTAATTTCGAAGACGAACAAGTTCGAGATGACAATGAGTTCCCAATTAGGGATTTCACTTCAAGATTGCCGGCGTCGCCGCCGCCGCCGGTAAATCTCATGCGATTTTGAAACTATGGGATTGGGGATCTACAGATCAGTCTCTACCCATTGATTCTAATTAACTATGTGTATACTGTAATTTGCTAAAGATGTTGTTCGTAGAGCCAAGTGTATAAATATCTAAAAAAGGTTCTCTAATTATATATTCTTTCTATTGTTATTATTAA

mRNA sequence

TCCATCATCACTACTCAATTCTCACCTCTCATCCATTTTTCAGTTTCCATCTTCACCATGTTCAACCACTACAATCCCTTTTCATTTACTCACAAGCTCAAATCCTCAATCCCTTCTTGTTTCCGCCCCGATCACGATGCCGAATTACACGAAAACGAAGACGATAATCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGGATGTGCCGGAGTCTCGTCGCTCGGATCAGTTGGCCGAGTCGCCGACGCTACCATCACTCTGCTGATTTTCGATACGATCCTTCCAGCTATGCCCTTAATTTCGAAGACGAACAAGTTCGAGATGACAATGAGTTCCCAATTAGGGATTTCACTTCAAGATTGCCGGCGTCGCCGCCGCCGCCGGTAAATCTCATGCGATTTTGAAACTATGGGATTGGGGATCTACAGATCAGTCTCTACCCATTGATTCTAATTAACTATGTGTATACTGTAATTTGCTAAAGATGTTGTTCGTAGAGCCAAGTGTATAAATATCTAAAAAAGGTTCTCTAATTATATATTCTTTCTATTGTTATTATTAA

Coding sequence (CDS)

ATGTTCAACCACTACAATCCCTTTTCATTTACTCACAAGCTCAAATCCTCAATCCCTTCTTGTTTCCGCCCCGATCACGATGCCGAATTACACGAAAACGAAGACGATAATCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGGATGTGCCGGAGTCTCGTCGCTCGGATCAGTTGGCCGAGTCGCCGACGCTACCATCACTCTGCTGATTTTCGATACGATCCTTCCAGCTATGCCCTTAATTTCGAAGACGAACAAGTTCGAGATGACAATGAGTTCCCAATTAGGGATTTCACTTCAAGATTGCCGGCGTCGCCGCCGCCGCCGGTAAATCTCATGCGATTTTGA

Protein sequence

MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMRF*
Homology
[Close]
BLAST of MELO3C016989 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-52
Identity = 105/121 (86.78%), Postives = 109/121 (90.08%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDD--NPALKSMTSDLPELRGMCRSLV 60
           MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLV
Sbjct: 1   MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLV 60

Query: 61  ARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMR 120
           ARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFPIRDFTSRLPAS PP VNLMR
Sbjct: 61  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPAS-PPHVNLMR 119

[Close]
BLAST of MELO3C016989 vs. TrEMBL
Match: W9RJD0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-15
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 40  LKSMTSDLPELRGMCRSLVARISWPSRRRYH--HSADFRYDPSSYALNFEDEQVRDDNEF 99
           LK    +LPE+R  CR+L++R+   SRR +H  +S+DF YD SSYALNFEDE  RDD  F
Sbjct: 55  LKLTAHELPEIRDRCRNLISRLG-RSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESF 114

Query: 100 PIRDFTSRLPASPPP 113
           P+R+F+SRLP SPPP
Sbjct: 115 PLRNFSSRLPVSPPP 128

[Close]
BLAST of MELO3C016989 vs. TrEMBL
Match: A0A059CPZ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01632 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-12
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 1 

Query: 10  FTHKLKSSIPS----CFRPD------HDAELHENEDDNPALKSMTSD---LPELRGMCRS 69
           F HKL+SS PS    CF         H+A   + +D +P     T+    LPE+R  CRS
Sbjct: 3   FHHKLRSSSPSLLFSCFHDGGHAAAYHEATSSDCDDGHPRKVRSTAQELLLPEIRYRCRS 62

Query: 70  LVARIS---W-PSRRRYHHSADFRYDPSSYALNFEDEQV-RDDNEFPIRDFTSRLPASP 111
           L+ARI    W P       S++F YDP SYALNFED++    D EF IR+F++RLP SP
Sbjct: 63  LIARIGRCRWRPGHAAAAASSEFGYDPMSYALNFEDDRSWESDEEFSIRNFSARLPVSP 121

[Close]
BLAST of MELO3C016989 vs. TrEMBL
Match: A0A059CPE8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01699 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 1 

Query: 10  FTHKLKSSIPS----CFRPD------HDAELHENEDDNPALKSMTSD---LPELRGMCRS 69
           F HKL+SS PS    CF         H+A   + +D +P     T+    LPE+R  CRS
Sbjct: 3   FHHKLRSSSPSLLFSCFHDGGHAAAYHEATSSDCDDGHPRKVRSTAQELLLPEIRYRCRS 62

Query: 70  LVARIS---W-PSRRRYHHSADFRYDPSSYALNFEDEQV-RDDNEFPIRDFTSRLPASP 111
           L+ARI    W P       S++F YDP SYALNFED++    D EF +R+F++RLP SP
Sbjct: 63  LIARIGRCRWRPGHAAAAASSEFGYDPMSYALNFEDDRSWESDEEFSMRNFSARLPVSP 121

[Close]
BLAST of MELO3C016989 vs. TrEMBL
Match: A0A059CQ19_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01695 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 1 

Query: 10  FTHKLKSSIPS---CFRPD------HDAELHENEDD-NPALKSMTSD---LPELRGMCRS 69
           F HKL+SS PS   C R D      HDA   + +D  NP     T+    L E+R  CRS
Sbjct: 3   FHHKLRSSSPSLLFCCRHDGHRAAYHDAASSDCDDGGNPRKVCSTAQELRLAEIRYKCRS 62

Query: 70  LVARISWPSRRRYHHSA------DFRYDPSSYALNFEDEQVRD-DNEFPIRDFTSRLPAS 111
           L+ARI     R  H +A      +F YDP SYALNFED++ R+ D EFP R+F +RLP S
Sbjct: 63  LIARIGRCRWRPGHAAAATAASLEFGYDPMSYALNFEDDRSRESDEEFPARNFLARLPVS 122

[Close]
BLAST of MELO3C016989 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-10
Identity = 46/134 (34.33%), Postives = 60/134 (44.78%), Query Frame = 1 

Query: 9   SFTHKLKSS--IPSCFRPD---HDAELHENEDDNPALKSMTSDLPELRGM---------- 68
           S   KLKS   I  CFR     H   + ++   +P     ++  P   GM          
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 69  -------CRSLVAR-------ISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDN--EF 112
                  C+SL+ R       +    +    H+ADF YDPSSYALNF D+   DDN   F
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNF-DKGDEDDNIDRF 129

[Close]
BLAST of MELO3C016989 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 39/86 (45.35%), Postives = 44/86 (51.16%), Query Frame = 1 

Query: 40  LKSMTSDLPELRGMCRSLVARISWPSRRR----------YHHS----ADFRYDPSSYALN 99
           LKS   +L ELR  CR + +RI    R            +HHS     DF YDP SYALN
Sbjct: 56  LKSTAQEL-ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALN 115

Query: 100 FEDE-QVRDDNEFPIRDFTSRLPASP 111
           FED  +  DD  FP  +FT+RLP SP
Sbjct: 116 FEDNVRADDDGSFP--NFTARLPQSP 138

[Close]
BLAST of MELO3C016989 vs. NCBI nr
Match: gi|659104300|ref|XP_008452891.1| (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 2.3e-65
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPALKSMTSDLPELRGMCRSLVAR 60
           MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPALKSMTSDLPELRGMCRSLVAR
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPALKSMTSDLPELRGMCRSLVAR 60

Query: 61  ISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMRF 120
           ISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMRF
Sbjct: 61  ISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMRF 119

[Close]
BLAST of MELO3C016989 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-52
Identity = 105/121 (86.78%), Postives = 109/121 (90.08%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDD--NPALKSMTSDLPELRGMCRSLV 60
           MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLV
Sbjct: 1   MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLV 60

Query: 61  ARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMR 120
           ARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFPIRDFTSRLPAS PP VNLMR
Sbjct: 61  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPAS-PPHVNLMR 119

[Close]
BLAST of MELO3C016989 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1 

Query: 13  KLKSSIPSCFRPDHDAELHENED-------DNPA------LKSMTSDLPELRGMCRSLVA 72
           K    +  CF      E+ ENE+        +P+      LKS   DLPE+R  CR+L++
Sbjct: 22  KSSMCLSGCFSTTVHHEVLENEEKIRTPKSSSPSSSYSSWLKSTAHDLPEIRDRCRNLIS 81

Query: 73  RISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPP 114
           RI     RR+++S +F YDPSSYALNFEDE  R ++EFP+RDF+SRLPASP PP
Sbjct: 82  RIG--KGRRHYNSGEFSYDPSSYALNFEDES-RYNDEFPLRDFSSRLPASPSPP 132

[Close]
BLAST of MELO3C016989 vs. NCBI nr
Match: gi|703111493|ref|XP_010099873.1| (hypothetical protein L484_008530 [Morus notabilis])

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-15
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 40  LKSMTSDLPELRGMCRSLVARISWPSRRRYH--HSADFRYDPSSYALNFEDEQVRDDNEF 99
           LK    +LPE+R  CR+L++R+   SRR +H  +S+DF YD SSYALNFEDE  RDD  F
Sbjct: 55  LKLTAHELPEIRDRCRNLISRLG-RSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESF 114

Query: 100 PIRDFTSRLPASPPP 113
           P+R+F+SRLP SPPP
Sbjct: 115 PLRNFSSRLPVSPPP 128

[Close]
BLAST of MELO3C016989 vs. NCBI nr
Match: gi|743766263|ref|XP_010913369.1| (PREDICTED: uncharacterized protein LOC105039077 [Elaeis guineensis])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1 

Query: 9   SFTHKLKSSI--PSCFR------------PDHDAELHENEDDNPALKSMTSDLPELRGMC 68
           SF +KL+SSI  P CFR             D +  L      +  L+S   +LPE++  C
Sbjct: 8   SFKNKLRSSICFPCCFRGAGFESPVAGAATDEERPLSLIRSSSVWLRSKAQELPEIKDRC 67

Query: 69  RSLVARISWPSRRRYHHSADFRYDPSSYALNFED---EQVRDDNEFPIRDFTSRLPASPP 114
            SL++R+     R+  HS  FRYDP SYALNF++   +    D EF  R+F+SRLPASPP
Sbjct: 68  CSLISRMG----RQRRHSGGFRYDPLSYALNFDEGFEDDALADEEFRYRNFSSRLPASPP 125

The following BLAST results are available for this feature:
BLAST of MELO3C016989 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4E2_CUCSA5.8e-5286.78Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1[more]
W9RJD0_9ROSA3.3e-1558.67Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1[more]
A0A059CPZ6_EUCGR4.5e-1243.70Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01632 PE=4 SV=1[more]
A0A059CPE8_EUCGR1.0e-1142.86Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01699 PE=4 SV=1[more]
A0A059CQ19_EUCGR1.3e-1145.45Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01695 PE=4 SV=1[more]
BLAST of MELO3C016989 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35090.18.4e-1034.33 unknown protein[more]
AT5G11070.11.2e-0845.35 unknown protein[more]
BLAST of MELO3C016989 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659104300|ref|XP_008452891.1|2.3e-65100.00PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo][more]
gi|700200304|gb|KGN55462.1|8.3e-5286.78hypothetical protein Csa_4G652740 [Cucumis sativus][more]
gi|1009136950|ref|XP_015885798.1|1.5e-1647.37PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba][more]
gi|703111493|ref|XP_010099873.1|4.8e-1558.67hypothetical protein L484_008530 [Morus notabilis][more]
gi|743766263|ref|XP_010913369.1|2.6e-1341.80PREDICTED: uncharacterized protein LOC105039077 [Elaeis guineensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU51398melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016989T1MELO3C016989T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU51398MU51398transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 9..117
score: 2.9
NoneNo IPR availablePANTHERPTHR33168:SF4SUBFAMILY NOT NAMEDcoord: 9..117
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C016989Csa4G652740Cucumber (Chinese Long) v2cumeB313
MELO3C016989Cla021000Watermelon (97103) v1mewmB528
MELO3C016989Cla022345Watermelon (97103) v1mewmB499
MELO3C016989ClCG05G016610Watermelon (Charleston Gray)mewcgB479
MELO3C016989ClCG08G013530Watermelon (Charleston Gray)mewcgB501
MELO3C016989Cla97C05G097600Watermelon (97103) v2mewmbB484
MELO3C016989Cla97C08G156930Watermelon (97103) v2mewmbB504
MELO3C016989Bhi04G000018Wax gourdmewgoB587
MELO3C016989Bhi09G002443Wax gourdmewgoB595
MELO3C016989CSPI04G26530Wild cucumber (PI 183967)cpimeB311
MELO3C016989CSPI02G23740Wild cucumber (PI 183967)cpimeB149
MELO3C016989Cucsa.271790Cucumber (Gy14) v1cgymeB454
MELO3C016989CmaCh05G003650Cucurbita maxima (Rimu)cmameB743
MELO3C016989CmaCh01G014860Cucurbita maxima (Rimu)cmameB446
MELO3C016989CmoCh01G015400Cucurbita moschata (Rifu)cmomeB438
MELO3C016989CmoCh05G003690Cucurbita moschata (Rifu)cmomeB731
MELO3C016989Lsi04G020990Bottle gourd (USVL1VR-Ls)lsimeB325
MELO3C016989Lsi08G012260Bottle gourd (USVL1VR-Ls)lsimeB486
MELO3C016989Cp4.1LG11g03310Cucurbita pepo (Zucchini)cpemeB108
MELO3C016989Cp4.1LG02g04030Cucurbita pepo (Zucchini)cpemeB536
MELO3C016989Cp4.1LG06g03190Cucurbita pepo (Zucchini)cpemeB734
MELO3C016989Carg00434Silver-seed gourdcarmeB0676
MELO3C016989Carg02860Silver-seed gourdcarmeB0633
MELO3C016989Carg09347Silver-seed gourdcarmeB0146
MELO3C016989CsaV3_4G036890Cucumber (Chinese Long) v3cucmeB316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016989Wax gourdmewgoB612
MELO3C016989Melon (DHL92) v3.5.1memeB099
MELO3C016989Melon (DHL92) v3.5.1memeB129
MELO3C016989Cucumber (Gy14) v1cgymeB283
MELO3C016989Cucurbita maxima (Rimu)cmameB040
MELO3C016989Cucurbita maxima (Rimu)cmameB080
MELO3C016989Cucurbita maxima (Rimu)cmameB143
MELO3C016989Cucurbita moschata (Rifu)cmomeB029
MELO3C016989Cucurbita moschata (Rifu)cmomeB074
MELO3C016989Cucurbita moschata (Rifu)cmomeB132
MELO3C016989Cucurbita moschata (Rifu)cmomeB170
MELO3C016989Cucumber (Chinese Long) v2cumeB150
MELO3C016989Cucumber (Chinese Long) v2cumeB563
MELO3C016989Cucurbita pepo (Zucchini)cpemeB643
MELO3C016989Cucumber (Gy14) v2cgybmeB072
MELO3C016989Cucumber (Gy14) v2cgybmeB270
MELO3C016989Cucumber (Gy14) v2cgybmeB503
MELO3C016989Cucumber (Chinese Long) v3cucmeB151
MELO3C016989Watermelon (97103) v2mewmbB510