CmoCh05G003690 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G003690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC09g45480D protein
Location	Cmo_Chr05 : 1671726 .. 1672127 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

mRNA sequence

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

Coding sequence (CDS)

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

Homology

[Close]

BLAST of CmoCh05G003690 vs. TrEMBL
Match: B9RNZ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 7   HSPAFARKLKSSFCCFHGFQQDDFL----DSPSKSPTRSPCSWFKSTVGEFRGILARCRY 66
           HSP+   KLKSS CCF      + L    DS  +   RSP +W KST  EF  I  +C  
Sbjct: 8   HSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEFE-IKEKCWG 67

Query: 67  LLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
           L+ R  + R+R+  S DF YD++SY+LNFEDD  ++DE P  NFTAR P
Sbjct: 68  LIGRRGKNRRRH-NSADFRYDAASYSLNFEDDIHKEDELPLNNFTARLP 114

[Close]

BLAST of CmoCh05G003690 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-13
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 6   HHSP-AFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLL 65
           H++P +F  KLKS   CF      +  D+PS SPT        S + E RG+   CR L+
Sbjct: 4   HYNPFSFTHKLKSPISCFRPDHDPELHDNPS-SPTSPALKSMTSDLPELRGM---CRSLV 63

Query: 66  ARIA-RRRKRYLASVDFSYDSSSYALNFEDD-CREDDEFPFRNFTARFP--PP 114
           ARI+   R+RY  S DF YD SSYALNFED+  R DDEFP R+FT+R P  PP
Sbjct: 64  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmoCh05G003690 vs. TrEMBL
Match: K4CK42_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 13  RKLKSSF-CCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG-----ILARCRYLLAR 72
           RK  SS  CCF    +   L   S SPTR   SWF++ +          I  +C+  + R
Sbjct: 14  RKTSSSLSCCFMNSPRRSDLFESSPSPTRFSSSWFRNKIKHDHNSNSPEIRGKCKSFIHR 73

Query: 73  IARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERV 119
           + R R+    S DFSYD  SYA+NF+DD  E++EFP RNF AR P  PP K+++
Sbjct: 74  MGRHRRH--VSADFSYDPLSYAMNFDDDEEEEEEFPERNFAARLPLSPPSKDKI 125

[Close]

BLAST of CmoCh05G003690 vs. TrEMBL
Match: M1CXJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029901 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 13  RKLKSSF-CCF-HGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG---ILARCRYLLARI 72
           RK  SS  CCF +  ++ D L   S SP+R    WF++ +        I  +C+  + R+
Sbjct: 15  RKTSSSLSCCFINSHRRSDLLIESSPSPSRFSSCWFRNKIKHDHNSPEIRGKCKSFIHRM 74

Query: 73  ARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERVP 120
            R R+    S DFSYD  SYA+NF+DD    +EFP RNF AR P  PP K+++P
Sbjct: 75  GRHRRH--VSADFSYDPLSYAMNFDDDDEPYEEFPARNFAARLPLSPPSKDKIP 126

[Close]

BLAST of CmoCh05G003690 vs. TrEMBL
Match: A0A0V0HAY1_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 13  RKLKSSF-CCF-HGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG---ILARCRYLLARI 72
           RK  SS  CCF +  ++ D L   S SP+R    WF++ +        I  +C+  + R+
Sbjct: 15  RKTSSSLSCCFINSHRRSDLLIESSPSPSRFSSCWFRNKIKHDHNSPEIRGKCKSFIHRM 74

Query: 73  ARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERVP 120
            R R+    S DFSYD  SYA+NF+DD    +EFP RNF AR P  PP K+++P
Sbjct: 75  GRHRRH--VSADFSYDPLSYAMNFDDDDEPYEEFPARNFAARLPLSPPSKDKIP 126

[Close]

BLAST of CmoCh05G003690 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-09
Identity = 39/116 (33.62%), Postives = 53/116 (45.69%), Query Frame = 1


Query: 14  KLKSSFCCFHG---FQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARR 73
           +++S  CC       + +  +    +   RSP  W KST  E   +  RCR + +RI   
Sbjct: 21  RMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQELE-LRDRCRRVKSRIKVT 80

Query: 74  RKRYLASV---------------DFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
            +    +                DFSYD  SYALNFED+ R DD+  F NFTAR P
Sbjct: 81  CRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFPNFTARLP 135

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: gi|659089577|ref|XP_008445585.1| (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 18  SFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64

Query: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 133
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 110

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: gi|1000974438|ref|XP_015572502.1| (PREDICTED: uncharacterized protein LOC8274225 [Ricinus communis])

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 7   HSPAFARKLKSSFCCFHGFQQDDFL----DSPSKSPTRSPCSWFKSTVGEFRGILARCRY 66
           HSP+   KLKSS CCF      + L    DS  +   RSP +W KST  EF  I  +C  
Sbjct: 8   HSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEFE-IKEKCWG 67

Query: 67  LLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
           L+ R  + R+R+  S DF YD++SY+LNFEDD  ++DE P  NFTAR P
Sbjct: 68  LIGRRGKNRRRH-NSADFRYDAASYSLNFEDDIHKEDELPLNNFTARLP 114

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 6   HHSP-AFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLL 65
           H++P +F  KLKS   CF      +  D+PS SPT        S + E RG+   CR L+
Sbjct: 4   HYNPFSFTHKLKSPISCFRPDHDPELHDNPS-SPTSPALKSMTSDLPELRGM---CRSLV 63

Query: 66  ARIA-RRRKRYLASVDFSYDSSSYALNFEDD-CREDDEFPFRNFTARFP--PP 114
           ARI+   R+RY  S DF YD SSYALNFED+  R DDEFP R+FT+R P  PP
Sbjct: 64  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 16  KSSFC---CFHGFQQDDFLDSPSK-------SPTRSPCSWFKSTVGEFRGILARCRYLLA 75
           KSS C   CF      + L++  K       SP+ S  SW KST  +   I  RCR L++
Sbjct: 22  KSSMCLSGCFSTTVHHEVLENEEKIRTPKSSSPSSSYSSWLKSTAHDLPEIRDRCRNLIS 81

Query: 76  RIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
           RI + R+ Y  S +FSYD SSYALNFED+ R +DEFP R+F++R P
Sbjct: 82  RIGKGRRHY-NSGEFSYDPSSYALNFEDESRYNDEFPLRDFSSRLP 126

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: gi|723721380|ref|XP_010324923.1| (PREDICTED: uncharacterized protein LOC104648756 [Solanum lycopersicum])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 13  RKLKSSF-CCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG-----ILARCRYLLAR 72
           RK  SS  CCF    +   L   S SPTR   SWF++ +          I  +C+  + R
Sbjct: 14  RKTSSSLSCCFMNSPRRSDLFESSPSPTRFSSSWFRNKIKHDHNSNSPEIRGKCKSFIHR 73

Query: 73  IARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERV 119
           + R R+    S DFSYD  SYA+NF+DD  E++EFP RNF AR P  PP K+++
Sbjct: 74  MGRHRRH--VSADFSYDPLSYAMNFDDDEEEEEEFPERNFAARLPLSPPSKDKI 125

The following BLAST results are available for this feature:

BLAST of CmoCh05G003690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G003690 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RNZ8_RICCO	3.3e-16	46.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1	[more]
A0A0A0L4E2_CUCSA	1.6e-13	48.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1	[more]
K4CK42_SOLLC	2.2e-12	41.23	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1CXJ0_SOLTU	6.5e-12	40.35	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029901 PE=4 SV=1	[more]
A0A0V0HAY1_SOLCH	6.5e-12	40.35	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmoCh05G003690 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11070.1	7.9e-09	33.62	unknown protein	[more]

BLAST of CmoCh05G003690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089577\|ref\|XP_008445585.1\|	2.3e-34	64.66	PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]	[more]
gi\|1000974438\|ref\|XP_015572502.1\|	4.8e-16	46.79	PREDICTED: uncharacterized protein LOC8274225 [Ricinus communis]	[more]
gi\|700200304\|gb\|KGN55462.1\|	2.2e-13	48.67	hypothetical protein Csa_4G652740 [Cucumis sativus]	[more]
gi\|1009136950\|ref\|XP_015885798.1\|	1.4e-12	45.28	PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba]	[more]
gi\|723721380\|ref\|XP_010324923.1\|	3.2e-12	41.23	PREDICTED: uncharacterized protein LOC104648756 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003690.1	CmoCh05G003690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 13..131 score: 1.0
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 13..131 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G003690	Cucsa.271790	Cucumber (Gy14) v1	cgycmoB0749
CmoCh05G003690	CmaCh05G003650	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G003690	Cla021000	Watermelon (97103) v1	cmowmB751
CmoCh05G003690	Cla022345	Watermelon (97103) v1	cmowmB748
CmoCh05G003690	Csa4G652740	Cucumber (Chinese Long) v2	cmocuB791
CmoCh05G003690	MELO3C016989	Melon (DHL92) v3.5.1	cmomeB731
CmoCh05G003690	ClCG05G016610	Watermelon (Charleston Gray)	cmowcgB704
CmoCh05G003690	ClCG08G013530	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G003690	CSPI02G23740	Wild cucumber (PI 183967)	cmocpiB788
CmoCh05G003690	CSPI04G26530	Wild cucumber (PI 183967)	cmocpiB794
CmoCh05G003690	Lsi04G020990	Bottle gourd (USVL1VR-Ls)	cmolsiB719
CmoCh05G003690	Lsi08G012260	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G003690	Cp4.1LG11g03310	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G003690	Cp4.1LG06g03190	Cucurbita pepo (Zucchini)	cmocpeB738
CmoCh05G003690	MELO3C030306.2	Melon (DHL92) v3.6.1	cmomedB813
CmoCh05G003690	MELO3C016989.2	Melon (DHL92) v3.6.1	cmomedB828
CmoCh05G003690	CsaV3_4G036890	Cucumber (Chinese Long) v3	cmocucB0932
CmoCh05G003690	CsaV3_2G032290	Cucumber (Chinese Long) v3	cmocucB0925
CmoCh05G003690	Cla97C05G097600	Watermelon (97103) v2	cmowmbB790
CmoCh05G003690	Cla97C08G156930	Watermelon (97103) v2	cmowmbB802
CmoCh05G003690	Bhi09G002443	Wax gourd	cmowgoB0965
CmoCh05G003690	Bhi04G000018	Wax gourd	cmowgoB0945
CmoCh05G003690	Carg09347	Silver-seed gourd	carcmoB0196
CmoCh05G003690	Carg02860	Silver-seed gourd	carcmoB0878

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G003690	Cucurbita moschata (Rifu)	cmocmoB032
CmoCh05G003690	Cucurbita moschata (Rifu)	cmocmoB156
CmoCh05G003690	Cucumber (Gy14) v1	cgycmoB0463
CmoCh05G003690	Cucurbita maxima (Rimu)	cmacmoB061
CmoCh05G003690	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G003690	Cucumber (Chinese Long) v2	cmocuB785
CmoCh05G003690	Melon (DHL92) v3.5.1	cmomeB716
CmoCh05G003690	Cucurbita pepo (Zucchini)	cmocpeB750
CmoCh05G003690	Cucumber (Gy14) v2	cgybcmoB244
CmoCh05G003690	Cucumber (Gy14) v2	cgybcmoB532
CmoCh05G003690	Silver-seed gourd	carcmoB1319