CmoCh05G003690.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G003690.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC09g45480D protein
Location	Cmo_Chr05 : 1671726 .. 1672127 (-)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

mRNA sequence

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

Coding sequence (CDS)

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

Homology

[Close]

BLAST of CmoCh05G003690.1 vs. TrEMBL
Match: B9RNZ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 7   HSPAFARKLKSSFCCFHGFQQDDFL----DSPSKSPTRSPCSWFKSTVGEFRGILARCRY 66
           HSP+   KLKSS CCF      + L    DS  +   RSP +W KST  EF  I  +C  
Sbjct: 8   HSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEFE-IKEKCWG 67

Query: 67  LLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
           L+ R  + R+R+  S DF YD++SY+LNFEDD  ++DE P  NFTAR P
Sbjct: 68  LIGRRGKNRRRH-NSADFRYDAASYSLNFEDDIHKEDELPLNNFTARLP 114

[Close]

BLAST of CmoCh05G003690.1 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-13
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 6   HHSP-AFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLL 65
           H++P +F  KLKS   CF      +  D+PS SPT        S + E RG+   CR L+
Sbjct: 4   HYNPFSFTHKLKSPISCFRPDHDPELHDNPS-SPTSPALKSMTSDLPELRGM---CRSLV 63

Query: 66  ARIA-RRRKRYLASVDFSYDSSSYALNFEDD-CREDDEFPFRNFTARFP--PP 114
           ARI+   R+RY  S DF YD SSYALNFED+  R DDEFP R+FT+R P  PP
Sbjct: 64  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmoCh05G003690.1 vs. TrEMBL
Match: K4CK42_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 13  RKLKSSF-CCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG-----ILARCRYLLAR 72
           RK  SS  CCF    +   L   S SPTR   SWF++ +          I  +C+  + R
Sbjct: 14  RKTSSSLSCCFMNSPRRSDLFESSPSPTRFSSSWFRNKIKHDHNSNSPEIRGKCKSFIHR 73

Query: 73  IARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERV 119
           + R R+    S DFSYD  SYA+NF+DD  E++EFP RNF AR P  PP K+++
Sbjct: 74  MGRHRRH--VSADFSYDPLSYAMNFDDDEEEEEEFPERNFAARLPLSPPSKDKI 125

[Close]

BLAST of CmoCh05G003690.1 vs. TrEMBL
Match: M1CXJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029901 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 13  RKLKSSF-CCF-HGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG---ILARCRYLLARI 72
           RK  SS  CCF +  ++ D L   S SP+R    WF++ +        I  +C+  + R+
Sbjct: 15  RKTSSSLSCCFINSHRRSDLLIESSPSPSRFSSCWFRNKIKHDHNSPEIRGKCKSFIHRM 74

Query: 73  ARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERVP 120
            R R+    S DFSYD  SYA+NF+DD    +EFP RNF AR P  PP K+++P
Sbjct: 75  GRHRRH--VSADFSYDPLSYAMNFDDDDEPYEEFPARNFAARLPLSPPSKDKIP 126

[Close]

BLAST of CmoCh05G003690.1 vs. TrEMBL
Match: A0A0V0HAY1_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 13  RKLKSSF-CCF-HGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG---ILARCRYLLARI 72
           RK  SS  CCF +  ++ D L   S SP+R    WF++ +        I  +C+  + R+
Sbjct: 15  RKTSSSLSCCFINSHRRSDLLIESSPSPSRFSSCWFRNKIKHDHNSPEIRGKCKSFIHRM 74

Query: 73  ARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERVP 120
            R R+    S DFSYD  SYA+NF+DD    +EFP RNF AR P  PP K+++P
Sbjct: 75  GRHRRH--VSADFSYDPLSYAMNFDDDDEPYEEFPARNFAARLPLSPPSKDKIP 126

[Close]

BLAST of CmoCh05G003690.1 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-09
Identity = 39/116 (33.62%), Postives = 53/116 (45.69%), Query Frame = 1


Query: 14  KLKSSFCCFHG---FQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARR 73
           +++S  CC       + +  +    +   RSP  W KST  E   +  RCR + +RI   
Sbjct: 21  RMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQELE-LRDRCRRVKSRIKVT 80

Query: 74  RKRYLASV---------------DFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
            +    +                DFSYD  SYALNFED+ R DD+  F NFTAR P
Sbjct: 81  CRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFPNFTARLP 135

[Close]

BLAST of CmoCh05G003690.1 vs. NCBI nr
Match: gi|659089577|ref|XP_008445585.1| (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 18  SFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64

Query: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 133
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 110

[Close]

BLAST of CmoCh05G003690.1 vs. NCBI nr
Match: gi|1000974438|ref|XP_015572502.1| (PREDICTED: uncharacterized protein LOC8274225 [Ricinus communis])

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 7   HSPAFARKLKSSFCCFHGFQQDDFL----DSPSKSPTRSPCSWFKSTVGEFRGILARCRY 66
           HSP+   KLKSS CCF      + L    DS  +   RSP +W KST  EF  I  +C  
Sbjct: 8   HSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEFE-IKEKCWG 67

Query: 67  LLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
           L+ R  + R+R+  S DF YD++SY+LNFEDD  ++DE P  NFTAR P
Sbjct: 68  LIGRRGKNRRRH-NSADFRYDAASYSLNFEDDIHKEDELPLNNFTARLP 114

[Close]

BLAST of CmoCh05G003690.1 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 6   HHSP-AFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLL 65
           H++P +F  KLKS   CF      +  D+PS SPT        S + E RG+   CR L+
Sbjct: 4   HYNPFSFTHKLKSPISCFRPDHDPELHDNPS-SPTSPALKSMTSDLPELRGM---CRSLV 63

Query: 66  ARIA-RRRKRYLASVDFSYDSSSYALNFEDD-CREDDEFPFRNFTARFP--PP 114
           ARI+   R+RY  S DF YD SSYALNFED+  R DDEFP R+FT+R P  PP
Sbjct: 64  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmoCh05G003690.1 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 16  KSSFC---CFHGFQQDDFLDSPSK-------SPTRSPCSWFKSTVGEFRGILARCRYLLA 75
           KSS C   CF      + L++  K       SP+ S  SW KST  +   I  RCR L++
Sbjct: 22  KSSMCLSGCFSTTVHHEVLENEEKIRTPKSSSPSSSYSSWLKSTAHDLPEIRDRCRNLIS 81

Query: 76  RIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
           RI + R+ Y  S +FSYD SSYALNFED+ R +DEFP R+F++R P
Sbjct: 82  RIGKGRRHY-NSGEFSYDPSSYALNFEDESRYNDEFPLRDFSSRLP 126

[Close]

BLAST of CmoCh05G003690.1 vs. NCBI nr
Match: gi|723721380|ref|XP_010324923.1| (PREDICTED: uncharacterized protein LOC104648756 [Solanum lycopersicum])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 13  RKLKSSF-CCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRG-----ILARCRYLLAR 72
           RK  SS  CCF    +   L   S SPTR   SWF++ +          I  +C+  + R
Sbjct: 14  RKTSSSLSCCFMNSPRRSDLFESSPSPTRFSSSWFRNKIKHDHNSNSPEIRGKCKSFIHR 73

Query: 73  IARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFP--PPIKERV 119
           + R R+    S DFSYD  SYA+NF+DD  E++EFP RNF AR P  PP K+++
Sbjct: 74  MGRHRRH--VSADFSYDPLSYAMNFDDDEEEEEEFPERNFAARLPLSPPSKDKI 125

The following BLAST results are available for this feature:

BLAST of CmoCh05G003690.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G003690.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RNZ8_RICCO	3.3e-16	46.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1	[more]
A0A0A0L4E2_CUCSA	1.6e-13	48.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1	[more]
K4CK42_SOLLC	2.2e-12	41.23	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1CXJ0_SOLTU	6.5e-12	40.35	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029901 PE=4 SV=1	[more]
A0A0V0HAY1_SOLCH	6.5e-12	40.35	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmoCh05G003690.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11070.1	7.9e-09	33.62	unknown protein	[more]

BLAST of CmoCh05G003690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089577\|ref\|XP_008445585.1\|	2.3e-34	64.66	PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]	[more]
gi\|1000974438\|ref\|XP_015572502.1\|	4.8e-16	46.79	PREDICTED: uncharacterized protein LOC8274225 [Ricinus communis]	[more]
gi\|700200304\|gb\|KGN55462.1\|	2.2e-13	48.67	hypothetical protein Csa_4G652740 [Cucumis sativus]	[more]
gi\|1009136950\|ref\|XP_015885798.1\|	1.4e-12	45.28	PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba]	[more]
gi\|723721380\|ref\|XP_010324923.1\|	3.2e-12	41.23	PREDICTED: uncharacterized protein LOC104648756 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G003690	CmoCh05G003690	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G003690.1	CmoCh05G003690.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G003690.1.CDS.1	CmoCh05G003690.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G003690.1.exon.1	CmoCh05G003690.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 13..131 score: 1.0
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 13..131 score: 1.0