CSPI04G26530 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G26530
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBnaC08g08060D protein
LocationChr4 : 23623572 .. 23624277 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTCATTCCTCTTCTTATTTTGCTCCCAATAATTCTCTATAAATATCTCTTCTATTTCTCTCCCCCATTTCCATCATCACTGCTTAACTCTCACCTCTCATCCATTTTTCATTACAAAACTTCCCATCTTCGTCACCATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCCACTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCACCACCGCCCGTAAATCTCATGCGATTTTGAAACCATGGGGTTGGGGATCTTCAGGGAGTCTCTACCCATTGATTCTAACTGTAATTTGCGATTTGCTAAAGGTGTTATTCGTAGAGCTAAATGTATAGATATCTAAAAAGCTCTCTAATTAATTATTAATTGTATATTCTTTCTATTGTTATTACTAATTTACTGATTATGTTTGCCTCTAATTTCGTTTAATTTCAATCAACCTT

mRNA sequence

ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCCACTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCACCACCGCCCGTAAATCTCATGCGATTTTGA

Coding sequence (CDS)

ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCCACTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCACCACCGCCCGTAAATCTCATGCGATTTTGA
Homology
[Close]
BLAST of CSPI04G26530 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.1e-64
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVA 60
           MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVA
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVA 60

Query: 61  RISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPPPVNLMRF 120
           RISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP VNLMRF
Sbjct: 61  RISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPPHVNLMRF 119

[Close]
BLAST of CSPI04G26530 vs. TrEMBL
Match: W9RJD0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 31  DNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSRRRYH--HSTDFRYDPSSYALN 90
           D   +P SP   LK    +LPE+R  CR+L++R+   SRR +H  +S+DF YD SSYALN
Sbjct: 43  DRIRTPRSPYAWLKLTAHELPEIRDRCRNLISRLG-RSRRNHHQRNSSDFSYDLSSYALN 102

Query: 91  FEDEQLRYDDEFPIRDFTSRLPASPPP 114
           FEDE  R D+ FP+R+F+SRLP SPPP
Sbjct: 103 FEDEYSRDDESFPLRNFSSRLPVSPPP 128

[Close]
BLAST of CSPI04G26530 vs. TrEMBL
Match: A0A022PWP4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013962mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-12
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 31  DNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFE 90
           D PS   SP+   KS  SDLPE++G CR+ ++R+    R R H S +F YDP SYALNF+
Sbjct: 39  DAPSPLRSPSAWFKSKASDLPEIKGKCRNFISRM---GRHRRHSSAEFSYDPLSYALNFD 98

Query: 91  DEQLR-YDDEFPIRDFTSRLPASPP 113
           D+QL  +DD     +FT+RLP SPP
Sbjct: 99  DDQLSPHDDYGTTTNFTARLPVSPP 120

[Close]
BLAST of CSPI04G26530 vs. TrEMBL
Match: A0A0J8BQY4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192700 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-11
Identity = 54/130 (41.54%), Postives = 68/130 (52.31%), Query Frame = 1 

Query: 12  HKLKSPI-SCFRPDHDPELHD---NPSSPTS----------------------PALKSMT 71
           H+LK  I  CF   H P  +D   N SSPTS                        ++S  
Sbjct: 13  HRLKHTICGCFT--HHPNQYDHLSNDSSPTSNHRQNNPQLTRTTSYGGGSGGLAMMRSSK 72

Query: 72  SDLPELRGMCRSLVARISWPSRRRYHH----STDFRYDPSSYALNFEDEQLRYDDEFPIR 112
           SD   L+G CRSL++RI   + R +HH    STDFRYDP SY+LNF+++    DD FP R
Sbjct: 73  SDEFNLKGKCRSLMSRIGTTTPRGHHHRKSHSTDFRYDPLSYSLNFDNDASDVDD-FPFR 132

[Close]
BLAST of CSPI04G26530 vs. TrEMBL
Match: B9RNZ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-11
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPS------SPTSPA--LKSMTSDLPELR 60
           M N  +  S  HKLKS I CF   H  E            +P SP   LKS   +  E++
Sbjct: 3   MINECHSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEF-EIK 62

Query: 61  GMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASP 112
             C  L+ R      RR H+S DFRYD +SY+LNFED+ +  +DE P+ +FT+RLPA+P
Sbjct: 63  EKCWGLIGRRG--KNRRRHNSADFRYDAASYSLNFEDD-IHKEDELPLNNFTARLPATP 117

[Close]
BLAST of CSPI04G26530 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 48/121 (39.67%), Postives = 63/121 (52.07%), Query Frame = 1 

Query: 12  HKLKSPISCFRPDH--DPE---LHDNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISW 71
           H+++SPI C   +   +PE   +     +P SP   LKS   +L ELR  CR + +RI  
Sbjct: 20  HRMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKV 79

Query: 72  PSRRR----------YHHST----DFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPAS 112
             R            +HHS     DF YDP SYALNFED  +R DD+    +FT+RLP S
Sbjct: 80  TCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFED-NVRADDDGSFPNFTARLPQS 138

[Close]
BLAST of CSPI04G26530 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 47/136 (34.56%), Postives = 62/136 (45.59%), Query Frame = 1 

Query: 9   SFTHKLKSPI---SCFRPD----HDPELHDNPSSPTSPALKS--------------MTSD 68
           S   KLKS      CFR      HD    D PSSP +    +              +T  
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 69  LPELRGMCRSLVAR-------ISWPSRRRYHHSTDFRYDPSSYALNF----EDEQLRYDD 113
           L +    C+SL+ R       +    +    H+ DF YDPSSYALNF    ED+ +   D
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNI---D 129

[Close]
BLAST of CSPI04G26530 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 7.3e-64
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVA 60
           MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVA
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVA 60

Query: 61  RISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPPPVNLMRF 120
           RISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP VNLMRF
Sbjct: 61  RISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPPHVNLMRF 119

[Close]
BLAST of CSPI04G26530 vs. NCBI nr
Match: gi|659104300|ref|XP_008452891.1| (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 3.7e-52
Identity = 106/121 (87.60%), Postives = 110/121 (90.91%), Query Frame = 1 

Query: 1   MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLV 60
           MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLV
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDD--NPALKSMTSDLPELRGMCRSLV 60

Query: 61  ARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPAS-PPPVNLMR 120
           ARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFPIRDFTSRLPAS PPPVNLMR
Sbjct: 61  ARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPPPPVNLMR 119

[Close]
BLAST of CSPI04G26530 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 32  NPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQ 91
           +PSS  S  LKS   DLPE+R  CR+L++RI     RR+++S +F YDPSSYALNFEDE 
Sbjct: 53  SPSSSYSSWLKSTAHDLPEIRDRCRNLISRIG--KGRRHYNSGEFSYDPSSYALNFEDES 112

Query: 92  LRYDDEFPIRDFTSRLPASPPP 114
            RY+DEFP+RDF+SRLPASP P
Sbjct: 113 -RYNDEFPLRDFSSRLPASPSP 131

[Close]
BLAST of CSPI04G26530 vs. NCBI nr
Match: gi|703111493|ref|XP_010099873.1| (hypothetical protein L484_008530 [Morus notabilis])

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 31  DNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSRRRYH--HSTDFRYDPSSYALN 90
           D   +P SP   LK    +LPE+R  CR+L++R+   SRR +H  +S+DF YD SSYALN
Sbjct: 43  DRIRTPRSPYAWLKLTAHELPEIRDRCRNLISRLG-RSRRNHHQRNSSDFSYDLSSYALN 102

Query: 91  FEDEQLRYDDEFPIRDFTSRLPASPPP 114
           FEDE  R D+ FP+R+F+SRLP SPPP
Sbjct: 103 FEDEYSRDDESFPLRNFSSRLPVSPPP 128

[Close]
BLAST of CSPI04G26530 vs. NCBI nr
Match: gi|848922632|ref|XP_012857782.1| (PREDICTED: uncharacterized protein LOC105977068 [Erythranthe guttata])

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-12
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 31  DNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFE 90
           D PS   SP+   KS  SDLPE++G CR+ ++R+    R R H S +F YDP SYALNF+
Sbjct: 39  DAPSPLRSPSAWFKSKASDLPEIKGKCRNFISRM---GRHRRHSSAEFSYDPLSYALNFD 98

Query: 91  DEQLR-YDDEFPIRDFTSRLPASPP 113
           D+QL  +DD     +FT+RLP SPP
Sbjct: 99  DDQLSPHDDYGTTTNFTARLPVSPP 120

The following BLAST results are available for this feature:
BLAST of CSPI04G26530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G26530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4E2_CUCSA5.1e-6499.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1[more]
W9RJD0_9ROSA2.8e-1454.02Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1[more]
A0A022PWP4_ERYGU5.9e-1250.59Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013962mg PE=4 SV=1[more]
A0A0J8BQY4_BETVU3.8e-1141.54Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192700 PE=4 S... [more]
B9RNZ8_RICCO6.5e-1141.18Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1[more]
BLAST of CSPI04G26530 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11070.12.9e-1039.67 unknown protein[more]
AT5G35090.13.2e-0934.56 unknown protein[more]
BLAST of CSPI04G26530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200304|gb|KGN55462.1|7.3e-6499.16hypothetical protein Csa_4G652740 [Cucumis sativus][more]
gi|659104300|ref|XP_008452891.1|3.7e-5287.60PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo][more]
gi|1009136950|ref|XP_015885798.1|1.3e-1762.20PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba][more]
gi|703111493|ref|XP_010099873.1|4.0e-1454.02hypothetical protein L484_008530 [Morus notabilis][more]
gi|848922632|ref|XP_012857782.1|8.4e-1250.59PREDICTED: uncharacterized protein LOC105977068 [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26530.1CSPI04G26530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 30..118
score: 3.4
NoneNo IPR availablePANTHERPTHR33168:SF4SUBFAMILY NOT NAMEDcoord: 30..118
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G26530Cla021000Watermelon (97103) v1cpiwmB325
CSPI04G26530Cla022345Watermelon (97103) v1cpiwmB302
CSPI04G26530Csa4G652740Cucumber (Chinese Long) v2cpicuB181
CSPI04G26530MELO3C016989Melon (DHL92) v3.5.1cpimeB311
CSPI04G26530ClCG08G013530Watermelon (Charleston Gray)cpiwcgB352
CSPI04G26530ClCG05G016610Watermelon (Charleston Gray)cpiwcgB326
CSPI04G26530Lsi04G020990Bottle gourd (USVL1VR-Ls)cpilsiB285
CSPI04G26530Lsi08G012260Bottle gourd (USVL1VR-Ls)cpilsiB318
CSPI04G26530MELO3C016989.2Melon (DHL92) v3.6.1cpimedB302
CSPI04G26530MELO3C030306.2Melon (DHL92) v3.6.1cpimedB277
CSPI04G26530CsaV3_4G036890Cucumber (Chinese Long) v3cpicucB212
CSPI04G26530Cla97C08G156930Watermelon (97103) v2cpiwmbB341
CSPI04G26530Cla97C05G097600Watermelon (97103) v2cpiwmbB315
CSPI04G26530Bhi09G002443Wax gourdcpiwgoB421
CSPI04G26530Bhi04G000018Wax gourdcpiwgoB390
CSPI04G26530Cucsa.271790Cucumber (Gy14) v1cgycpiB409
CSPI04G26530CmaCh01G014860Cucurbita maxima (Rimu)cmacpiB472
CSPI04G26530CmaCh05G003650Cucurbita maxima (Rimu)cmacpiB809
CSPI04G26530CmoCh01G015400Cucurbita moschata (Rifu)cmocpiB461
CSPI04G26530CmoCh05G003690Cucurbita moschata (Rifu)cmocpiB794
CSPI04G26530Cp4.1LG11g03310Cucurbita pepo (Zucchini)cpecpiB111
CSPI04G26530Cp4.1LG02g04030Cucurbita pepo (Zucchini)cpecpiB577
CSPI04G26530Cp4.1LG06g03190Cucurbita pepo (Zucchini)cpecpiB784
CSPI04G26530Carg00434Silver-seed gourdcarcpiB0700
CSPI04G26530Carg02860Silver-seed gourdcarcpiB0666
CSPI04G26530Carg09347Silver-seed gourdcarcpiB0161
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI04G26530CSPI02G23740Wild cucumber (PI 183967)cpicpiB075
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G26530Wild cucumber (PI 183967)cpicpiB168
CSPI04G26530Cucumber (Gy14) v1cgycpiB246
CSPI04G26530Cucurbita maxima (Rimu)cmacpiB020
CSPI04G26530Cucurbita maxima (Rimu)cmacpiB078
CSPI04G26530Cucurbita maxima (Rimu)cmacpiB131
CSPI04G26530Cucurbita moschata (Rifu)cmocpiB011
CSPI04G26530Cucurbita moschata (Rifu)cmocpiB071
CSPI04G26530Cucurbita moschata (Rifu)cmocpiB122
CSPI04G26530Cucurbita moschata (Rifu)cmocpiB173
CSPI04G26530Cucumber (Chinese Long) v2cpicuB176
CSPI04G26530Cucumber (Chinese Long) v2cpicuB206
CSPI04G26530Melon (DHL92) v3.5.1cpimeB271
CSPI04G26530Melon (DHL92) v3.5.1cpimeB281
CSPI04G26530Cucurbita pepo (Zucchini)cpecpiB682
CSPI04G26530Cucumber (Gy14) v2cgybcpiB027
CSPI04G26530Cucumber (Gy14) v2cgybcpiB169
CSPI04G26530Cucumber (Gy14) v2cgybcpiB321
CSPI04G26530Cucumber (Chinese Long) v3cpicucB207
CSPI04G26530Watermelon (97103) v2cpiwmbB348
CSPI04G26530Wax gourdcpiwgoB429