CmoCh01G015400 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G015400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC08g08060D protein
Location	Cmo_Chr01 : 11889843 .. 11890217 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTGAACGACTACCATCCATTTTCATTTACTCGCAAGCTCAAATCCTCAATCCTCTGTTTCCGTCGCGATCATGGCGATTTCCTCGAAAACGAAGGCGATTCTTCTCCAAGAACCCCTAGATCGCCGCTGAAATCAATGGCCGCAGAGTTCCCGGAGCTTCGAGGAATGTGCAGGAATCTCGTCGCTCGGATCGGCAGGTCTCGCCGCCGGTACCATCACTCCGCCGATTTCCGATACGATCCTTCTAGCTATGCGCTTAATTTCGAGGACGAACAGGTTCGGGATGATGATGAGTTTCCGATTAGGGATTTCGCTTCCAGATTGCCGGCGTCTCCGCCGACTTCCCCGAGACTTTCGCCCGCGAAATGA

mRNA sequence

ATGATGTTGAACGACTACCATCCATTTTCATTTACTCGCAAGCTCAAATCCTCAATCCTCTGTTTCCGTCGCGATCATGGCGATTTCCTCGAAAACGAAGGCGATTCTTCTCCAAGAACCCCTAGATCGCCGCTGAAATCAATGGCCGCAGAGTTCCCGGAGCTTCGAGGAATGTGCAGGAATCTCGTCGCTCGGATCGGCAGGTCTCGCCGCCGGTACCATCACTCCGCCGATTTCCGATACGATCCTTCTAGCTATGCGCTTAATTTCGAGGACGAACAGGTTCGGGATGATGATGAGTTTCCGATTAGGGATTTCGCTTCCAGATTGCCGGCGTCTCCGCCGACTTCCCCGAGACTTTCGCCCGCGAAATGA

Coding sequence (CDS)

ATGATGTTGAACGACTACCATCCATTTTCATTTACTCGCAAGCTCAAATCCTCAATCCTCTGTTTCCGTCGCGATCATGGCGATTTCCTCGAAAACGAAGGCGATTCTTCTCCAAGAACCCCTAGATCGCCGCTGAAATCAATGGCCGCAGAGTTCCCGGAGCTTCGAGGAATGTGCAGGAATCTCGTCGCTCGGATCGGCAGGTCTCGCCGCCGGTACCATCACTCCGCCGATTTCCGATACGATCCTTCTAGCTATGCGCTTAATTTCGAGGACGAACAGGTTCGGGATGATGATGAGTTTCCGATTAGGGATTTCGCTTCCAGATTGCCGGCGTCTCCGCCGACTTCCCCGAGACTTTCGCCCGCGAAATGA

Homology

[Close]

BLAST of CmoCh01G015400 vs. TrEMBL
Match: A0A0A0L4E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-36
Identity = 83/116 (71.55%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSP-LKSMAAEFPELRGMCR 61
           M N Y+PFSFT KLKS I CFR DH   L +    +P +P SP LKSM ++ PELRGMCR
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCR 60

Query: 62  NLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 116
           +LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP
Sbjct: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmoCh01G015400 vs. TrEMBL
Match: W9RJD0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-21
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 2   MLNDYHPFSFTRK----LKSSIL---CFRRD-HGDFLENEGDSSPRTPRSP---LKSMAA 61
           M++DY   S + K     K S+    CF    H + L  +     RTPRSP   LK  A 
Sbjct: 1   MISDYQSSSSSPKEQRLTKPSMCLSGCFSTSVHHEVLGGDDSDRIRTPRSPYAWLKLTAH 60

Query: 62  EFPELRGMCRNLVARIGRSRRRYH--HSADFRYDPSSYALNFEDEQVRDDDEFPIRDFAS 118
           E PE+R  CRNL++R+GRSRR +H  +S+DF YD SSYALNFEDE  RDD+ FP+R+F+S
Sbjct: 61  ELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNFSS 120

[Close]

BLAST of CmoCh01G015400 vs. TrEMBL
Match: B9RNZ8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 1


Query: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPR--TPRSP---LKSMAAEFPELR 61
           M+N+ H  S   KLKSSI CF   H        D S R  TPRSP   LKS A EF E++
Sbjct: 3   MINECHSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEF-EIK 62

Query: 62  GMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPT 121
             C  L+ R G++RRR H+SADFRYD +SY+LNFED+ +  +DE P+ +F +RLPA+P  
Sbjct: 63  EKCWGLIGRRGKNRRR-HNSADFRYDAASYSLNFEDD-IHKEDELPLNNFTARLPATPDR 122

Query: 122 SPRLSPAK 125
              + P +
Sbjct: 123 FTEVVPPR 127

[Close]

BLAST of CmoCh01G015400 vs. TrEMBL
Match: A0A067KP11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07120 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1


Query: 2   MLNDYHPFSFTRKLKSSILCFRRDHG---DFLENEGDSSPRTPRSP---LKSMAAEFPEL 61
           M+N+ H  S   +LK SI CF   +    + L+++      TPRS    LKS A +  E+
Sbjct: 5   MINECHAPSLKDRLKFSICCFATSYNNPSETLDSDDGRRLHTPRSTYAWLKSTAQDL-EI 64

Query: 62  RGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 115
           R  C  L+   G++RRRY+ S+DFRYDP+SY+LNFEDE  R +DE P+ +F +RLP SP
Sbjct: 65  RDKCWGLIGTRGKNRRRYN-SSDFRYDPTSYSLNFEDENNR-EDELPLSNFTARLPPSP 120

[Close]

BLAST of CmoCh01G015400 vs. TrEMBL
Match: A0A0K9PQ45_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_186G00230 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-13
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 14  KLKSSIL---CF----RRDHGDFLENEGDSS-PRTPRSPLKSMAAEFPELRGMCRNLVAR 73
           K+KSSI    CF     RDH D  +     S  +T  + ++S A E P ++G CR L++R
Sbjct: 51  KIKSSICFSCCFGSEPNRDHRDTQQQSTSFSLMQTSSTWIRSKAQELPGIQGKCRGLISR 110

Query: 74  IGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD------EFPIRDFASRLPASPPTSPR 125
           IG++RR  HHS DFRYDP SYALNF+     D+D       +  + F+SRLPASP   P 
Sbjct: 111 IGKNRR--HHSTDFRYDPFSYALNFDGGPDFDEDGDGSSSPYKYKSFSSRLPASPRLQPS 170

[Close]

BLAST of CmoCh01G015400 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 1


Query: 10  SFTRKLKSSIL---CFR---RDHGDFLENEGDSSPRTPRSPLKS-----MAAEFPEL--- 69
           S  +KLKS      CFR     H D + ++  SSP T     +S     M  + P L   
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 70  ----RGMCRNLVARIG--------RSRRRYHHSADFRYDPSSYALNFEDEQVRDD-DEFP 120
                  C++L+ R+G          +    H+ADF YDPSSYALNF+     D+ D FP
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNIDRFP 129

[Close]

BLAST of CmoCh01G015400 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 47/99 (47.47%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 39  RTPRSP---LKSMAAEFPELRGMCRNLVARIGRSRRR-----------YHHS----ADFR 98
           RTPRSP   LKS A E  ELR  CR + +RI  + R            +HHS     DF 
Sbjct: 47  RTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFS 106

Query: 99  YDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 120
           YDP SYALNFED  VR DD+    +F +RLP SP T  R
Sbjct: 107 YDPLSYALNFED-NVRADDDGSFPNFTARLPQSPVTKTR 143

[Close]

BLAST of CmoCh01G015400 vs. NCBI nr
Match: gi|700200304|gb|KGN55462.1| (hypothetical protein Csa_4G652740 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 83/116 (71.55%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSP-LKSMAAEFPELRGMCR 61
           M N Y+PFSFT KLKS I CFR DH   L +    +P +P SP LKSM ++ PELRGMCR
Sbjct: 1   MFNHYNPFSFTHKLKSPISCFRPDHDPELHD----NPSSPTSPALKSMTSDLPELRGMCR 60

Query: 62  NLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 116
           +LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDEFPIRDF SRLPASPP
Sbjct: 61  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASPP 112

[Close]

BLAST of CmoCh01G015400 vs. NCBI nr
Match: gi|659104300|ref|XP_008452891.1| (PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 84/116 (72.41%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 2   MLNDYHPFSFTRKLKSSI-LCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCR 61
           M N Y+PFSFT KLKSSI  CFR DH   L    D +P      LKSM ++ PELRGMCR
Sbjct: 1   MFNHYNPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPA-----LKSMTSDLPELRGMCR 60

Query: 62  NLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPP 116
           +LVARI   SRRRYHHSADFRYDPSSYALNFEDEQVRDD+EFPIRDF SRLPASPP
Sbjct: 61  SLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASPP 111

[Close]

BLAST of CmoCh01G015400 vs. NCBI nr
Match: gi|703111493|ref|XP_010099873.1| (hypothetical protein L484_008530 [Morus notabilis])

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-21
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 2   MLNDYHPFSFTRK----LKSSIL---CFRRD-HGDFLENEGDSSPRTPRSP---LKSMAA 61
           M++DY   S + K     K S+    CF    H + L  +     RTPRSP   LK  A 
Sbjct: 1   MISDYQSSSSSPKEQRLTKPSMCLSGCFSTSVHHEVLGGDDSDRIRTPRSPYAWLKLTAH 60

Query: 62  EFPELRGMCRNLVARIGRSRRRYH--HSADFRYDPSSYALNFEDEQVRDDDEFPIRDFAS 118
           E PE+R  CRNL++R+GRSRR +H  +S+DF YD SSYALNFEDE  RDD+ FP+R+F+S
Sbjct: 61  ELPEIRDRCRNLISRLGRSRRNHHQRNSSDFSYDLSSYALNFEDEYSRDDESFPLRNFSS 120

[Close]

BLAST of CmoCh01G015400 vs. NCBI nr
Match: gi|1000974438|ref|XP_015572502.1| (PREDICTED: uncharacterized protein LOC8274225 [Ricinus communis])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 1


Query: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGDSSPR--TPRSP---LKSMAAEFPELR 61
           M+N+ H  S   KLKSSI CF   H        D S R  TPRSP   LKS A EF E++
Sbjct: 3   MINECHSPSLKHKLKSSICCFPSSHHHETLGGSDDSRRQLTPRSPYAWLKSTAQEF-EIK 62

Query: 62  GMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPT 121
             C  L+ R G++RRR H+SADFRYD +SY+LNFED+ +  +DE P+ +F +RLPA+P  
Sbjct: 63  EKCWGLIGRRGKNRRR-HNSADFRYDAASYSLNFEDD-IHKEDELPLNNFTARLPATPDR 122

Query: 122 SPRLSPAK 125
              + P +
Sbjct: 123 FTEVVPPR 127

[Close]

BLAST of CmoCh01G015400 vs. NCBI nr
Match: gi|1009136950|ref|XP_015885798.1| (PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 26  HGDFLENEGDSSPRTPRSP---------LKSMAAEFPELRGMCRNLVARIGRSRRRYHHS 85
           H + LENE     RTP+S          LKS A + PE+R  CRNL++RIG+ RR Y+ S
Sbjct: 36  HHEVLENE--EKIRTPKSSSPSSSYSSWLKSTAHDLPEIRDRCRNLISRIGKGRRHYN-S 95

Query: 86  ADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 115
            +F YDPSSYALNFEDE  R +DEFP+RDF+SRLPASP
Sbjct: 96  GEFSYDPSSYALNFEDES-RYNDEFPLRDFSSRLPASP 129

The following BLAST results are available for this feature:

BLAST of CmoCh01G015400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G015400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4E2_CUCSA	7.9e-36	71.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652740 PE=4 SV=1	[more]
W9RJD0_9ROSA	5.5e-21	50.39	Uncharacterized protein OS=Morus notabilis GN=L484_008530 PE=4 SV=1	[more]
B9RNZ8_RICCO	1.3e-17	46.88	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922720 PE=4 SV=1	[more]
A0A067KP11_JATCU	2.2e-14	44.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07120 PE=4 SV=1	[more]
A0A0K9PQ45_ZOSMR	5.5e-13	43.20	Uncharacterized protein OS=Zostera marina GN=ZOSMA_186G00230 PE=4 SV=1	[more]

BLAST of CmoCh01G015400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35090.1	2.7e-11	35.77	unknown protein	[more]
AT5G11070.1	1.7e-10	47.47	unknown protein	[more]

BLAST of CmoCh01G015400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200304\|gb\|KGN55462.1\|	1.1e-35	71.55	hypothetical protein Csa_4G652740 [Cucumis sativus]	[more]
gi\|659104300\|ref\|XP_008452891.1\|	1.5e-35	72.41	PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo]	[more]
gi\|703111493\|ref\|XP_010099873.1\|	7.9e-21	50.39	hypothetical protein L484_008530 [Morus notabilis]	[more]
gi\|1000974438\|ref\|XP_015572502.1\|	1.8e-17	46.88	PREDICTED: uncharacterized protein LOC8274225 [Ricinus communis]	[more]
gi\|1009136950\|ref\|XP_015885798.1\|	1.8e-17	57.14	PREDICTED: uncharacterized protein LOC107421138 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G015400.1	CmoCh01G015400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 2..115 score: 8.6
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 2..115 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G015400	Cucsa.271790	Cucumber (Gy14) v1	cgycmoB0747
CmoCh01G015400	CmaCh01G014860	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G015400	Cla021000	Watermelon (97103) v1	cmowmB430
CmoCh01G015400	Cla022345	Watermelon (97103) v1	cmowmB418
CmoCh01G015400	Csa4G652740	Cucumber (Chinese Long) v2	cmocuB457
CmoCh01G015400	MELO3C016989	Melon (DHL92) v3.5.1	cmomeB438
CmoCh01G015400	ClCG05G016610	Watermelon (Charleston Gray)	cmowcgB409
CmoCh01G015400	ClCG08G013530	Watermelon (Charleston Gray)	cmowcgB437
CmoCh01G015400	CSPI04G26530	Wild cucumber (PI 183967)	cmocpiB461
CmoCh01G015400	Lsi04G020990	Bottle gourd (USVL1VR-Ls)	cmolsiB419
CmoCh01G015400	Lsi08G012260	Bottle gourd (USVL1VR-Ls)	cmolsiB445
CmoCh01G015400	Cp4.1LG02g04030	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G015400	Cp4.1LG06g03190	Cucurbita pepo (Zucchini)	cmocpeB460
CmoCh01G015400	MELO3C030306.2	Melon (DHL92) v3.6.1	cmomedB460
CmoCh01G015400	MELO3C016989.2	Melon (DHL92) v3.6.1	cmomedB502
CmoCh01G015400	CsaV3_4G036890	Cucumber (Chinese Long) v3	cmocucB0545
CmoCh01G015400	CsaV3_2G032290	Cucumber (Chinese Long) v3	cmocucB0520
CmoCh01G015400	Cla97C05G097600	Watermelon (97103) v2	cmowmbB459
CmoCh01G015400	Cla97C08G156930	Watermelon (97103) v2	cmowmbB488
CmoCh01G015400	Bhi09G002443	Wax gourd	cmowgoB0624
CmoCh01G015400	Bhi04G000018	Wax gourd	cmowgoB0573
CmoCh01G015400	Carg02860	Silver-seed gourd	carcmoB0870
CmoCh01G015400	Carg00434	Silver-seed gourd	carcmoB0922

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G015400	Silver-seed gourd	carcmoB1315
CmoCh01G015400	Cucurbita moschata (Rifu)	cmocmoB012
CmoCh01G015400	Cucurbita moschata (Rifu)	cmocmoB106
CmoCh01G015400	Cucurbita moschata (Rifu)	cmocmoB142
CmoCh01G015400	Cucumber (Gy14) v1	cgycmoB0862
CmoCh01G015400	Cucurbita maxima (Rimu)	cmacmoB040
CmoCh01G015400	Cucurbita maxima (Rimu)	cmacmoB185
CmoCh01G015400	Wild cucumber (PI 183967)	cmocpiB436
CmoCh01G015400	Cucumber (Chinese Long) v2	cmocuB432
CmoCh01G015400	Cucurbita pepo (Zucchini)	cmocpeB475
CmoCh01G015400	Cucumber (Gy14) v2	cgybcmoB201
CmoCh01G015400	Cucumber (Gy14) v2	cgybcmoB479