Lsi01G018920 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTATGAATGAATTTCCATCTTCCTTTTCTCCATTTCTTTTTTACTTTTTGAAGAATGTAGAAATTAAATGTAGGTTTTCTTGTAAGTTTTTGTTTTAACTCAAAGATTCTGAGTTCTTGTTACTGTAGACTTAGATTAGGGTTTCTCGCTTTCTTCTTCTTCGAAATGATTGTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGTAAATGGCTAATTCCCCTGTTACTTTGATGTTGTTCTGCTAAATCTTTCCAAATCTTTCAATTTTGTGGTTTATTGTGCATTTGATTCATATTGTTTATAGCAAACCTATTCACATTGTTATCACATATGGTCTCTGGTATGCATATACGTACTCTAATAGCTGTAAGATTTGTTCTCTGATACAGTATATTTGTTTGGATTTGTTCTAATTTTAATTTGCTTGATCTTTGGAAAACCTCCTTTTGATTTTTCTGGTGTAGTTGTTGTGATTCTTGTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTTAGTTGAATTGATTTTTAACCGAAAATGTTATTGCATATGTTTAATCCTTTTTTGTGAATCCTTAGATTGGATCACTTTCCTTTCTCTTTAAGTTAATTAATCAATAAATTTTCAGCGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGTAGATTCTTTTGGTTTGTAACATCCATGTCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGTTAACATAATTCGTCTCCTTTTTAGTTTTTATATTCATTGTTTTCTTGGATTCCAATCGGTTTTTAGGCTTCATTTTTACCCGTTATTAGAACTACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGTGCTGACTAGGTAGTCCAATCAACATTTTGGGCCTATGTTAAAGCTGTGATTTGGATGTCAAATTGCTGATTTATTAGCCAATAAGTTTTTAAAAAACTATGTTTGAAAAGCATATTAACACTCATATTATCGTTACTTGTGGGACATGTGTAGAATTCTCATTAAGCATGCGTTGACACTTGTACATTATTTGACCTGACGTTTCAATGTATTAGTATTAATTAATTTATTTTGTTTGAAAAGTTTAATGGACGAGAAAATATATAATTTGAGTGAAAAGTATCATATTTAATTTTTCAAGCATCTAGGTGCATATATATTATTGACCTTAAATTTGTTAAGATTATAGAATCCTTTTTTAAATAACGACTCTTTCTCAGATATTCTCATACACTAAAGCAAACTATTATGAGGAAAAATCTTTGTAATGAAATAAAATAGTTACATGATTTTTCAAAATTGTAGAAAGTAAATGTGCCATTGCTTTTTCTGTCCTCATTTTTCAGAAAATATCATATCACGTTATAATTCATCATGTCTTCTCTATGTCACGTGTTTGTGTCTATGGACCATTCATCTAAAATCTTTGTTACTTTTTAAGTTGATTCACTGATAATTTTGCTGTCAATGGGGAAACATTCCCACTATCTTATCACTTCTCTGCCGATTTCATTTGAGAGCTGTCTTTTACAAGTCTTCTTTGAGCTATGTTCTTTCACTAATCAAAGCGAATTCTCTTTAAAACATTGCATCTGGGCTCAGGTTTTTGTCTTTCCAAGAGTTCCAACTTATTTAGCTTTATCCTGCATGTGGGCATTTGGATATTTAGCTACTGCTCCATGTCATTCAATATCACCTGTGTTTTTCCTAGTTTTTCATTTGAGGCAATTGAAAGGTCATTTAGTTAATATGGAGAGAATGTTATTGTTTTAATCAGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGATTCATTTCAACACAAACACATTCCCTGAAATGTTTTGGCAATCATCTGACTTAAACTCAGGAACTTCAGAGGATCAATCATCTGCTGATGATTACTTTGGTCAAGAGCGCCCATTGATCAGAGGGAGGGAGAAAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGTGGAGGATTATGTGTTAGTTTCCTTTAAAAAATGAATCCTTTTCATTTACAAAAACCATCTTTGGATTTAGATGTTTAGTAAGCATTCTACAATATATAGGGCTTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGCCTTTTCTGGGCGGTGGAAATGATGTAAATAGAAATTTTATTCACTCTACAACTTGAAATTTTTGCCTTTCGAAATCTTATTAGATGCACATTTTTGATTGGCTGCCATTATCATCAGGTTTGAAGTGATCTCTACAATCAGGTGAGAATGAAATCCCTT AAAAAATTGAAAATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTTTTCTTTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGATTCATTTCAACACAAACACATTCCCTGAAATGTTTTGGCAATCATCTGACTTAAACTCAGGAACTTCAGAGGATCAATCATCTGCTGATGATTACTTTGGTCAAGAGCGCCCATTGATCAGAGGGAGGGAGAAAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGTGGAGGATTATGTGTTAGTTTCCTTTAAAAAATGAATCCTTTTCATTTACAAAAACCATCTTTGGATTTAGATGTTTAGTAAGCATTCTACAATATATAGGGCTTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGCCTTTTCTGGGCGGTGGAAATGATGTAAATAGAAATTTTATTCACTCTACAACTTGAAATTTTTGCCTTTCGAAATCTTATTAGATGCACATTTTTGATTGGCTGCCATTATCATCAGGTTTGAAGTGATCTCTACAATCAGGTGAGAATGAAATCCCTT ATGAGTTTAAGTAGCGCCCAAATTTTCGCATTTGAAATTTGCCCAAAATTTCGCCTTCTCTCCAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCGTCTCACAGAAGAGAGCGCCTCCCACCAATCCACCGCCATTTCGTTTGGTCAAAGGTTAAACAAATACTCCATTGAAGCTCACTGGAATCTCACAGTTTTCTTTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCTGAGGTATTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCAGATTGCACGCACTACAACGACTACTGCTCAACAAAGACCTACGAATCCCAGCCCTGGTGGAGGTGGTCCGAATCTGAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGTAATAGACATCTTTACAGATCTCCAGTTTTGAACCGCGAGAATACGGCGGCTGGGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTATTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACCGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTACAGCGTATCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGCAAAGTTCCAAAGATTCTTCTTGGAATCGCAAATCAGAACACGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTGCAGAAATTGAAAAGAACTCCCAGTGCTAAGAAAGCAGAGAGGGAGAAAAGGGTTCGAACTTTAATGTCGTTTCGTTGA MSLSSAQIFAFEICPKFRLLSKQLHLLPSHFSTARLTEESASHQSTAISFGQRLNKYSIEAHWNLTVFFSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTQIARTTTTTAQQRPTNPSPGGGGPNLRRTFGSPISGGIGRNRHLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKPTVGKVPKILLGIANQNTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR
BLAST of Lsi01G018920 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 8.4e-51 Identity = 134/261 (51.34%), Postives = 165/261 (63.22%), Query Frame = 1
BLAST of Lsi01G018920 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 8.5e-35 Identity = 121/268 (45.15%), Postives = 147/268 (54.85%), Query Frame = 1
BLAST of Lsi01G018920 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 2.8e-130 Identity = 264/325 (81.23%), Postives = 277/325 (85.23%), Query Frame = 1
BLAST of Lsi01G018920 vs. TrEMBL
Match: F6HL68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 3.8e-50 Identity = 147/268 (54.85%), Postives = 168/268 (62.69%), Query Frame = 1
BLAST of Lsi01G018920 vs. TrEMBL
Match: V4LQQ2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 9.4e-49 Identity = 133/259 (51.35%), Postives = 164/259 (63.32%), Query Frame = 1
BLAST of Lsi01G018920 vs. TrEMBL
Match: V4RKR5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005700mg PE=4 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 6.1e-48 Identity = 141/266 (53.01%), Postives = 168/266 (63.16%), Query Frame = 1
BLAST of Lsi01G018920 vs. TrEMBL
Match: D7LI35_ARALL (Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 7.9e-48 Identity = 132/260 (50.77%), Postives = 164/260 (63.08%), Query Frame = 1
BLAST of Lsi01G018920 vs. TAIR10
Match: AT2G42260.1 (AT2G42260.1 uv-b-insensitive 4) HSP 1 Score: 202.2 bits (513), Expect = 4.7e-52 Identity = 134/261 (51.34%), Postives = 165/261 (63.22%), Query Frame = 1
BLAST of Lsi01G018920 vs. TAIR10
Match: AT3G57860.1 (AT3G57860.1 UV-B-insensitive 4-like) HSP 1 Score: 149.1 bits (375), Expect = 4.8e-36 Identity = 121/268 (45.15%), Postives = 147/268 (54.85%), Query Frame = 1
BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus]) HSP 1 Score: 473.0 bits (1216), Expect = 4.1e-130 Identity = 264/325 (81.23%), Postives = 277/325 (85.23%), Query Frame = 1
BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo]) HSP 1 Score: 426.8 bits (1096), Expect = 3.4e-116 Identity = 229/249 (91.97%), Postives = 238/249 (95.58%), Query Frame = 1
BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus]) HSP 1 Score: 424.5 bits (1090), Expect = 1.7e-115 Identity = 228/249 (91.57%), Postives = 237/249 (95.18%), Query Frame = 1
BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|1009106074|ref|XP_015868489.1| (PREDICTED: protein POLYCHOME-like [Ziziphus jujuba]) HSP 1 Score: 207.6 bits (527), Expect = 3.2e-50 Identity = 142/260 (54.62%), Postives = 165/260 (63.46%), Query Frame = 1
BLAST of Lsi01G018920 vs. NCBI nr
Match: gi|225441692|ref|XP_002277253.1| (PREDICTED: protein POLYCHOME [Vitis vinifera]) HSP 1 Score: 206.8 bits (525), Expect = 5.5e-50 Identity = 147/268 (54.85%), Postives = 168/268 (62.69%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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