Lsi09G006860 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G006860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr09 : 7794919 .. 7795152 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Protein sequence

MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

Homology

[Close]

BLAST of Lsi09G006860 vs. TrEMBL
Match: A0A0A0KPB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-23
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          + AA DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

[Close]

BLAST of Lsi09G006860 vs. TrEMBL
Match: A0A0D2RM82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-09
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 13  DSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERP 72
           + +   +PIHSQV KIK+E EKIKHPSLQQ +M   L      I++ RSRSPLGL AERP
Sbjct: 45  EDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRRVLR----EITRQRSRSPLGL-AERP 104

Query: 73  ISVGN 78
           ISVGN
Sbjct: 105 ISVGN 104

[Close]

BLAST of Lsi09G006860 vs. TrEMBL
Match: B9HJF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13370g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-09
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 10 GDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAA 69
          GD D      PIHSQV KI++E +KIKHPSLQQ E+   +  R   I++ RSRSPLGL A
Sbjct: 15 GDGDHGYVGFPIHSQVIKIRQEFDKIKHPSLQQLEVRGVVKCR---INRQRSRSPLGL-A 74

Query: 70 ERPISVGN 78
          ERPISVGN
Sbjct: 75 ERPISVGN 78

[Close]

BLAST of Lsi09G006860 vs. TrEMBL
Match: A0A061E8X1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 19 LPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN 78
          +PIHSQV KIK+E EKIKHPSL+Q++M   L      I++ RSRSPLGL AERPISVGN
Sbjct: 30 VPIHSQVMKIKQEFEKIKHPSLRQADMRRVLR----EITRQRSRSPLGL-AERPISVGN 83

[Close]

BLAST of Lsi09G006860 vs. TrEMBL
Match: A0A0D2QEK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172500 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-08
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1


Query: 2  ENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRS 61
          EN    AA   +     +PIHSQV KIK+E EKIKHPSLQQ++M   L      I++ RS
Sbjct: 9  ENNNNKAAIRDEDGYKGVPIHSQVMKIKREFEKIKHPSLQQADMRRVLR----EITRQRS 68

Query: 62 RSPLGLAAERPISVGN 78
          RSPLGL AERPI+VG+
Sbjct: 69 RSPLGL-AERPIAVGH 79

[Close]

BLAST of Lsi09G006860 vs. TAIR10
Match: AT1G67920.1 (AT1G67920.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 1


Query: 1  MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60
          MEN T    G+ D  +    IHSQVEKIKKE EKI+ PSLQQ EM    +L  I   + R
Sbjct: 1  MENKTDN--GNEDGPI----IHSQVEKIKKEFEKIRQPSLQQPEMRR--VLSEIK-RRQR 60

Query: 61 SRSPLGLAAERPISVGN 78
          SRSPLGL  ER ISVGN
Sbjct: 61 SRSPLGL-GERSISVGN 67

[Close]

BLAST of Lsi09G006860 vs. TAIR10
Match: AT1G24600.1 (AT1G24600.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.0e-08
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 21 IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA-AERPISVGN 78
          IHSQV KIK+E EKI+HPSL+Q EM   L+ R I +   RSRSPLGL   ER I VGN
Sbjct: 18 IHSQVVKIKREFEKIQHPSLKQPEM--PLVFREI-MGPRRSRSPLGLGERERSIPVGN 72

[Close]

BLAST of Lsi09G006860 vs. NCBI nr
Match: gi|659072795|ref|XP_008467101.1| (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.3e-25
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +TAA DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

[Close]

BLAST of Lsi09G006860 vs. NCBI nr
Match: gi|778703910|ref|XP_011655448.1| (PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-23
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          + AA DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

[Close]

BLAST of Lsi09G006860 vs. NCBI nr
Match: gi|1009154831|ref|XP_015895384.1| (PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba])

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-09
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 1  MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60
          ME       G+    V  +P+HSQV KIK+E EKI+HPSLQQ EM   +LLR    ++ R
Sbjct: 1  MEEKMNMGNGEDGHVVVGVPVHSQVMKIKQEFEKIRHPSLQQPEMR-RVLLR--DFNRQR 60

Query: 61 SRSPLGLAAERPISVGN 78
          SRSPLGL AERPISVGN
Sbjct: 61 SRSPLGL-AERPISVGN 73

[Close]

BLAST of Lsi09G006860 vs. NCBI nr
Match: gi|823158187|ref|XP_012478961.1| (PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 13  DSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERP 72
           + +   +PIHSQV KIK+E EKIKHPSLQQ +M   L      I++ RSRSPLGL AERP
Sbjct: 45  EDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRRVLR----EITRQRSRSPLGL-AERP 104

Query: 73  ISVGN 78
           ISVGN
Sbjct: 105 ISVGN 104

[Close]

BLAST of Lsi09G006860 vs. NCBI nr
Match: gi|224099549|ref|XP_002311528.1| (hypothetical protein POPTR_0008s13370g [Populus trichocarpa])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 10 GDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAA 69
          GD D      PIHSQV KI++E +KIKHPSLQQ E+   +  R   I++ RSRSPLGL A
Sbjct: 15 GDGDHGYVGFPIHSQVIKIRQEFDKIKHPSLQQLEVRGVVKCR---INRQRSRSPLGL-A 74

Query: 70 ERPISVGN 78
          ERPISVGN
Sbjct: 75 ERPISVGN 78

The following BLAST results are available for this feature:

BLAST of Lsi09G006860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G006860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPB9_CUCSA	1.6e-23	84.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1	[more]
A0A0D2RM82_GOSRA	8.7e-09	61.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1	[more]
B9HJF8_POPTR	8.7e-09	60.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13370g PE=4 SV=1	[more]
A0A061E8X1_THECC	1.1e-08	66.10	Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1	[more]
A0A0D2QEK8_GOSRA	1.9e-08	55.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172500 PE=4 SV=1	[more]

BLAST of Lsi09G006860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67920.1	2.7e-09	57.14	unknown protein	[more]
AT1G24600.1	5.0e-08	62.07	unknown protein	[more]

BLAST of Lsi09G006860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072795\|ref\|XP_008467101.1\|	4.3e-25	87.50	PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo]	[more]
gi\|778703910\|ref\|XP_011655448.1\|	2.3e-23	84.72	PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus]	[more]
gi\|1009154831\|ref\|XP_015895384.1\|	7.3e-09	57.14	PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba]	[more]
gi\|823158187\|ref\|XP_012478961.1\|	1.2e-08	61.54	PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii]	[more]
gi\|224099549\|ref\|XP_002311528.1\|	1.2e-08	60.29	hypothetical protein POPTR_0008s13370g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G006860.1	Lsi09G006860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 2..77 score: 9.1
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 2..77 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G006860	Csa5G561250	Cucumber (Chinese Long) v2	culsiB327
Lsi09G006860	CSPI05G19210	Wild cucumber (PI 183967)	cpilsiB327
Lsi09G006860	Cucsa.012190	Cucumber (Gy14) v1	cgylsiB315
Lsi09G006860	Cla003953	Watermelon (97103) v1	lsiwmB028
Lsi09G006860	MELO3C005274	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G006860	ClCG01G006530	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G006860	MELO3C005274.2	Melon (DHL92) v3.6.1	lsimedB013
Lsi09G006860	Cla97C01G006840	Watermelon (97103) v2	lsiwmbB007
Lsi09G006860	Bhi12G000818	Wax gourd	lsiwgoB006
Lsi09G006860	Cp4.1LG01g18320	Cucurbita pepo (Zucchini)	cpelsiB315
Lsi09G006860	Carg26056	Silver-seed gourd	carlsiB388
Lsi09G006860	CsaV3_5G028140	Cucumber (Chinese Long) v3	cuclsiB350

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G006860	Wild cucumber (PI 183967)	cpilsiB329
Lsi09G006860	Cucumber (Chinese Long) v2	culsiB329
Lsi09G006860	Cucumber (Gy14) v2	cgyblsiB299
Lsi09G006860	Cucumber (Gy14) v2	cgyblsiB301
Lsi09G006860	Silver-seed gourd	carlsiB799
Lsi09G006860	Silver-seed gourd	carlsiB868
Lsi09G006860	Cucumber (Chinese Long) v3	cuclsiB352
Lsi09G006860	Cucumber (Gy14) v1	cgylsiB452
Lsi09G006860	Cucurbita maxima (Rimu)	cmalsiB263
Lsi09G006860	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G006860	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G006860	Cucurbita maxima (Rimu)	cmalsiB626
Lsi09G006860	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G006860	Cucurbita moschata (Rifu)	cmolsiB250
Lsi09G006860	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G006860	Cucurbita moschata (Rifu)	cmolsiB615
Lsi09G006860	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G006860	Cucurbita pepo (Zucchini)	cpelsiB135
Lsi09G006860	Cucurbita pepo (Zucchini)	cpelsiB311