Cp4.1LG01g18320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionmRNA, clone: RTFL01-09-C22
LocationCp4.1LG01 : 15578069 .. 15578293 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACCCGACGGCGGTCGCCGATGGCGGTTTGGACTCTCAGGCTCCGGTTCACATCCAGGTTGTGAAGATCAAGCGGGAGATTGAGAAGATCAAGCATCCCTCCCTTCAGCAATCCGAGATGAGCACTCATCTTCTTCTTCGCGACATGTCGATTTCCAAACCGCGACCTCGCTCCCCGCTAGGGCTCGCTGCGGAGAGGTCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACCCGACGGCGGTCGCCGATGGCGGTTTGGACTCTCAGGCTCCGGTTCACATCCAGGTTGTGAAGATCAAGCGGGAGATTGAGAAGATCAAGCATCCCTCCCTTCAGCAATCCGAGATGAGCACTCATCTTCTTCTTCGCGACATGTCGATTTCCAAACCGCGACCTCGCTCCCCGCTAGGGCTCGCTGCGGAGAGGTCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACCCGACGGCGGTCGCCGATGGCGGTTTGGACTCTCAGGCTCCGGTTCACATCCAGGTTGTGAAGATCAAGCGGGAGATTGAGAAGATCAAGCATCCCTCCCTTCAGCAATCCGAGATGAGCACTCATCTTCTTCTTCGCGACATGTCGATTTCCAAACCGCGACCTCGCTCCCCGCTAGGGCTCGCTGCGGAGAGGTCTATTTCCGTCGGGAATTAA

Protein sequence

MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSISVGN
Homology
[Close]
BLAST of Cp4.1LG01g18320 vs. TrEMBL
Match: A0A0A0KPB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-16
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 14 SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSISVG 73
          S  P+H QV KIK+EIEKIKHPSLQQS+M+THLLLR +SISKPR RSPLGL ++ SISVG
Sbjct: 15 SHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSDTSISVG 74

Query: 74 N 75
          N
Sbjct: 75 N 75

[Close]
BLAST of Cp4.1LG01g18320 vs. TrEMBL
Match: D7KAL2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_890209 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 1  MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          ME      D G +S  P+H QVVKIKRE EKI+HPSL+Q EM   L+LR++ +   R RS
Sbjct: 1  MEKKANHGDDGHESVPPIHSQVVKIKREFEKIQHPSLKQPEMP--LVLREI-MGPRRSRS 60

Query: 61 PLGLA-AERSISVGN 75
          PLGL   ERSI VGN
Sbjct: 61 PLGLGERERSIPVGN 72

[Close]
BLAST of Cp4.1LG01g18320 vs. TrEMBL
Match: A0A0D2QEK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172500 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1 

Query: 3  NPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPL 62
          N  A+ D       P+H QV+KIKRE EKIKHPSLQQ++M    +LR+  I++ R RSPL
Sbjct: 13 NKAAIRDEDGYKGVPIHSQVMKIKREFEKIKHPSLQQADM--RRVLRE--ITRQRSRSPL 72

Query: 63 GLAAERSISVGN 75
          GL AER I+VG+
Sbjct: 73 GL-AERPIAVGH 79

[Close]
BLAST of Cp4.1LG01g18320 vs. TrEMBL
Match: A0A061E8X1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 

Query: 3  NPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPL 62
          N +A+ D       P+H QV+KIK+E EKIKHPSL+Q++M    +LR+  I++ R RSPL
Sbjct: 17 NISAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADM--RRVLRE--ITRQRSRSPL 76

Query: 63 GLAAERSISVGN 75
          GL AER ISVGN
Sbjct: 77 GL-AERPISVGN 83

[Close]
BLAST of Cp4.1LG01g18320 vs. TrEMBL
Match: R0GPI6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012415mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 1  MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          M+N     D   +S  P+H QVVKIKRE EKI+HPSL+Q EM     +R   +S  R RS
Sbjct: 1  MDNKANHGDDRHESVPPIHSQVVKIKREFEKIQHPSLRQPEMPR---VRREIVSPQRSRS 60

Query: 61 PLGLA-AERSISVGN 75
          PLGL   ER I VGN
Sbjct: 61 PLGLGERERPIPVGN 72

[Close]
BLAST of Cp4.1LG01g18320 vs. TAIR10
Match: AT1G24600.1 (AT1G24600.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-09
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 1  MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          ME      D   +S   +H QVVKIKRE EKI+HPSL+Q EM   L+ R++ +   R RS
Sbjct: 1  MEKKANHGDDVQESVPIIHSQVVKIKREFEKIQHPSLKQPEMP--LVFREI-MGPRRSRS 60

Query: 61 PLGLA-AERSISVGN 75
          PLGL   ERSI VGN
Sbjct: 61 PLGLGERERSIPVGN 72

[Close]
BLAST of Cp4.1LG01g18320 vs. TAIR10
Match: AT1G67920.1 (AT1G67920.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 1  MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          MEN T   D G +    +H QV KIK+E EKI+ PSLQQ EM    +L ++   + R RS
Sbjct: 1  MENKT---DNGNEDGPIIHSQVEKIKKEFEKIRQPSLQQPEM--RRVLSEIK-RRQRSRS 60

Query: 61 PLGLAAERSISVGN 75
          PLGL  ERSISVGN
Sbjct: 61 PLGL-GERSISVGN 67

[Close]
BLAST of Cp4.1LG01g18320 vs. NCBI nr
Match: gi|659072795|ref|XP_008467101.1| (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-17
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = 1 

Query: 1  MENPTAVADGGLD-SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60
          M+  TA  D   + SQ P+H QV KIK+EIEKIKHPSLQQS+M+THLLLR +SISKPR R
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLAAERSISVGN 75
          SPLGL ++  ISVGN
Sbjct: 61 SPLGLPSDTPISVGN 75

[Close]
BLAST of Cp4.1LG01g18320 vs. NCBI nr
Match: gi|778703910|ref|XP_011655448.1| (PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-16
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 14 SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSISVG 73
          S  P+H QV KIK+EIEKIKHPSLQQS+M+THLLLR +SISKPR RSPLGL ++ SISVG
Sbjct: 15 SHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSDTSISVG 74

Query: 74 N 75
          N
Sbjct: 75 N 75

[Close]
BLAST of Cp4.1LG01g18320 vs. NCBI nr
Match: gi|297851114|ref|XP_002893438.1| (hypothetical protein ARALYDRAFT_890209 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 1  MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          ME      D G +S  P+H QVVKIKRE EKI+HPSL+Q EM   L+LR++ +   R RS
Sbjct: 1  MEKKANHGDDGHESVPPIHSQVVKIKREFEKIQHPSLKQPEMP--LVLREI-MGPRRSRS 60

Query: 61 PLGLA-AERSISVGN 75
          PLGL   ERSI VGN
Sbjct: 61 PLGLGERERSIPVGN 72

[Close]
BLAST of Cp4.1LG01g18320 vs. NCBI nr
Match: gi|1009154831|ref|XP_015895384.1| (PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 9  DGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAER 68
          DG +    PVH QV+KIK+E EKI+HPSLQQ EM   +LLRD   ++ R RSPLGL AER
Sbjct: 12 DGHVVVGVPVHSQVMKIKQEFEKIRHPSLQQPEM-RRVLLRD--FNRQRSRSPLGL-AER 71

Query: 69 SISVGN 75
           ISVGN
Sbjct: 72 PISVGN 73

[Close]
BLAST of Cp4.1LG01g18320 vs. NCBI nr
Match: gi|763747922|gb|KJB15361.1| (hypothetical protein B456_002G172500 [Gossypium raimondii])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1 

Query: 3  NPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPL 62
          N  A+ D       P+H QV+KIKRE EKIKHPSLQQ++M    +LR+  I++ R RSPL
Sbjct: 13 NKAAIRDEDGYKGVPIHSQVMKIKREFEKIKHPSLQQADM--RRVLRE--ITRQRSRSPL 72

Query: 63 GLAAERSISVGN 75
          GL AER I+VG+
Sbjct: 73 GL-AERPIAVGH 79

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPB9_CUCSA3.2e-1675.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1[more]
D7KAL2_ARALL1.4e-0856.00Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A0D2QEK8_GOSRA1.6e-0754.17Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172500 PE=4 SV=1[more]
A0A061E8X1_THECC1.6e-0754.17Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1[more]
R0GPI6_9BRAS2.1e-0752.00Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012415mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g18320 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24600.12.6e-0952.00 unknown protein[more]
AT1G67920.19.8e-0952.70 unknown protein[more]
BLAST of Cp4.1LG01g18320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072795|ref|XP_008467101.1|5.4e-1766.67PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo][more]
gi|778703910|ref|XP_011655448.1|4.6e-1675.41PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus][more]
gi|297851114|ref|XP_002893438.1|2.0e-0856.00hypothetical protein ARALYDRAFT_890209 [Arabidopsis lyrata subsp. lyrata][more]
gi|1009154831|ref|XP_015895384.1|2.7e-0862.12PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba][more]
gi|763747922|gb|KJB15361.1|2.3e-0754.17hypothetical protein B456_002G172500 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18320.1Cp4.1LG01g18320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g18320Cucsa.012190Cucumber (Gy14) v1cgycpeB0523
Cp4.1LG01g18320Cla003953Watermelon (97103) v1cpewmB442
Cp4.1LG01g18320Csa5G561250Cucumber (Chinese Long) v2cpecuB443
Cp4.1LG01g18320MELO3C005274Melon (DHL92) v3.5.1cpemeB347
Cp4.1LG01g18320ClCG01G006530Watermelon (Charleston Gray)cpewcgB373
Cp4.1LG01g18320CSPI05G19210Wild cucumber (PI 183967)cpecpiB444
Cp4.1LG01g18320Lsi09G006860Bottle gourd (USVL1VR-Ls)cpelsiB315
Cp4.1LG01g18320MELO3C005274.2Melon (DHL92) v3.6.1cpemedB407
Cp4.1LG01g18320CsaV3_5G028140Cucumber (Chinese Long) v3cpecucB0547
Cp4.1LG01g18320Bhi12G000818Wax gourdcpewgoB0494
Cp4.1LG01g18320Carg26056Silver-seed gourdcarcpeB0600
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g18320Silver-seed gourdcarcpeB1319
Cp4.1LG01g18320Cucumber (Chinese Long) v3cpecucB0526
Cp4.1LG01g18320Wax gourdcpewgoB0491
Cp4.1LG01g18320Cucurbita pepo (Zucchini)cpecpeB200
Cp4.1LG01g18320Cucumber (Gy14) v1cgycpeB0737
Cp4.1LG01g18320Cucurbita maxima (Rimu)cmacpeB310
Cp4.1LG01g18320Cucurbita maxima (Rimu)cmacpeB319
Cp4.1LG01g18320Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g18320Cucurbita moschata (Rifu)cmocpeB273
Cp4.1LG01g18320Cucurbita moschata (Rifu)cmocpeB281
Cp4.1LG01g18320Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g18320Wild cucumber (PI 183967)cpecpiB422
Cp4.1LG01g18320Cucumber (Chinese Long) v2cpecuB424
Cp4.1LG01g18320Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g18320Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g18320Watermelon (97103) v1cpewmB440
Cp4.1LG01g18320Melon (DHL92) v3.5.1cpemeB353
Cp4.1LG01g18320Cucumber (Gy14) v2cgybcpeB634
Cp4.1LG01g18320Cucumber (Gy14) v2cgybcpeB651
Cp4.1LG01g18320Melon (DHL92) v3.6.1cpemedB412