Cucsa.012190 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.012190
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAt1g67920
Locationscaffold00154 : 1673849 .. 1674237 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTACTCCGCGGCGGCCCTCGATTCCGATTCCGAGGTTTCTCACCTTCCCATTCACAGCCAGGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCCTCTCTTCAGCAATCCGACATGAACACTCACCTTCTTCTTCGAGGGATCTCCATTTCCAAGCCACGCTCTCGCTCCCCCTTAGGCCTTCCCTCCGACACCTCTATTTCTGTCGGCAACTAATCTCTCTCTCTCTCTGTAAACCCTAGATTCATTCTTCAACCATCCATCTACAAAGTaCATACTTTTTGTTTtAGGCTTtCCGACCTAATCTATGAATCCAATATTATGCTGGAATTTCTTCTTCTtCTTCTTCTTCTTCTTTCTATCAAaCTAATTTTACT

mRNA sequence

ATGGACTACTCCGCGGCGGCCCTCGATTCCGATTCCGAGGTTTCTCACCTTCCCATTCACAGCCAGGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCCTCTCTTCAGCAATCCGACATGAACACTCACCTTCTTCTTCGAGGGATCTCCATTTCCAAGCCACGCTCTCGCTCCCCCTTAGGCCTTCCCTCCGACACCTCTATTTCTGTCGGCAACTAATCTCTCTCTCTCTCTGTAAACCCTAGATTCATTCTTCAACCATCCATCTACAAAGTACATACTTTTTGTTTTAGGCTTTCCGACCTAATCTATGAATCCAATATTATGCTGGAATttcttcttcttcttcttcttcttcttTCTATCAAACTAattttact

Coding sequence (CDS)

ATGGACTACTCCGCGGCGGCCCTCGATTCCGATTCCGAGGTTTCTCACCTTCCCATTCACAGCCAGGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCCTCTCTTCAGCAATCCGACATGAACACTCACCTTCTTCTTCGAGGGATCTCCATTTCCAAGCCACGCTCTCGCTCCCCCTTAGGCCTTCCCTCCGACACCTCTATTTCTGTCGGCAACTAA

Protein sequence

MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSDTSISVGN*
Homology
[Close]
BLAST of Cucsa.012190 vs. TrEMBL
Match: A0A0A0KPB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSISVGN 76
          SPLGLPSDTSISVGN
Sbjct: 61 SPLGLPSDTSISVGN 75

[Close]
BLAST of Cucsa.012190 vs. TrEMBL
Match: A0A0D2RM82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 6   AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
           A +  + E   +PIHSQV KIK+E EKIKHPSLQQ DM    +LR   I++ RSRSPLGL
Sbjct: 40  AVIRDEDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRR--VLR--EITRQRSRSPLGL 99

Query: 66  PSDTSISVGN 76
            ++  ISVGN
Sbjct: 100 -AERPISVGN 104

[Close]
BLAST of Cucsa.012190 vs. TrEMBL
Match: A0A061E8X1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 6  AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
          +A+  ++    +PIHSQV KIK+E EKIKHPSL+Q+DM    +LR   I++ RSRSPLGL
Sbjct: 19 SAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADMRR--VLR--EITRQRSRSPLGL 78

Query: 66 PSDTSISVGN 76
           ++  ISVGN
Sbjct: 79 -AERPISVGN 83

[Close]
BLAST of Cucsa.012190 vs. TrEMBL
Match: A0A0D2QEK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-08
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 6  AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
          AA+  +     +PIHSQV KIK+E EKIKHPSLQQ+DM    +LR   I++ RSRSPLGL
Sbjct: 15 AAIRDEDGYKGVPIHSQVMKIKREFEKIKHPSLQQADMRR--VLR--EITRQRSRSPLGL 74

Query: 66 PSDTSISVGN 76
           ++  I+VG+
Sbjct: 75 -AERPIAVGH 79

[Close]
BLAST of Cucsa.012190 vs. TrEMBL
Match: A0A067F095_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038640mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 9  DSDSEVS---HLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 67
          D D  V    +LPIHSQV KIKKE EK+KHPSLQQ +M    +L G++  + RSRSPLGL
Sbjct: 37 DEDENVQIGRYLPIHSQVMKIKKEFEKVKHPSLQQPEMRR--VLHGLNRQR-RSRSPLGL 94

[Close]
BLAST of Cucsa.012190 vs. TAIR10
Match: AT1G67920.1 (AT1G67920.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.5e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 19 IHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSDTSISVGN 76
          IHSQVEKIKKE EKI+ PSLQQ +M    +L  I   + RSRSPLGL  + SISVGN
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRR--VLSEIK-RRQRSRSPLGL-GERSISVGN 67

[Close]
BLAST of Cucsa.012190 vs. TAIR10
Match: AT1G24600.1 (AT1G24600.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-08
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 

Query: 19 IHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL-PSDTSISVGN 76
          IHSQV KIK+E EKI+HPSL+Q +M   L+ R I +   RSRSPLGL   + SI VGN
Sbjct: 18 IHSQVVKIKREFEKIQHPSLKQPEM--PLVFREI-MGPRRSRSPLGLGERERSIPVGN 72

[Close]
BLAST of Cucsa.012190 vs. NCBI nr
Match: gi|778703910|ref|XP_011655448.1| (PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSISVGN 76
          SPLGLPSDTSISVGN
Sbjct: 61 SPLGLPSDTSISVGN 75

[Close]
BLAST of Cucsa.012190 vs. NCBI nr
Match: gi|659072795|ref|XP_008467101.1| (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-31
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYS AALDSDSEVS +PIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSISVGN 76
          SPLGLPSDT ISVGN
Sbjct: 61 SPLGLPSDTPISVGN 75

[Close]
BLAST of Cucsa.012190 vs. NCBI nr
Match: gi|823158187|ref|XP_012478961.1| (PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 6   AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
           A +  + E   +PIHSQV KIK+E EKIKHPSLQQ DM    +LR   I++ RSRSPLGL
Sbjct: 40  AVIRDEDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRR--VLR--EITRQRSRSPLGL 99

Query: 66  PSDTSISVGN 76
            ++  ISVGN
Sbjct: 100 -AERPISVGN 104

[Close]
BLAST of Cucsa.012190 vs. NCBI nr
Match: gi|590696774|ref|XP_007045256.1| (Uncharacterized protein TCM_011040 [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 6  AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
          +A+  ++    +PIHSQV KIK+E EKIKHPSL+Q+DM    +LR   I++ RSRSPLGL
Sbjct: 19 SAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADMRR--VLR--EITRQRSRSPLGL 78

Query: 66 PSDTSISVGN 76
           ++  ISVGN
Sbjct: 79 -AERPISVGN 83

[Close]
BLAST of Cucsa.012190 vs. NCBI nr
Match: gi|763747922|gb|KJB15361.1| (hypothetical protein B456_002G172500 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 6  AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
          AA+  +     +PIHSQV KIK+E EKIKHPSLQQ+DM    +LR   I++ RSRSPLGL
Sbjct: 15 AAIRDEDGYKGVPIHSQVMKIKREFEKIKHPSLQQADMRR--VLR--EITRQRSRSPLGL 74

Query: 66 PSDTSISVGN 76
           ++  I+VG+
Sbjct: 75 -AERPIAVGH 79

The following BLAST results are available for this feature:
BLAST of Cucsa.012190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPB9_CUCSA2.9e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1[more]
A0A0D2RM82_GOSRA1.1e-0857.14Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1[more]
A0A061E8X1_THECC7.3e-0854.29Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1[more]
A0A0D2QEK8_GOSRA9.5e-0854.29Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172500 PE=4 SV=1[more]
A0A067F095_CITSI1.6e-0759.02Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038640mg PE=4 SV=1[more]
BLAST of Cucsa.012190 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67920.14.5e-0963.16 unknown protein[more]
AT1G24600.18.5e-0858.62 unknown protein[more]
BLAST of Cucsa.012190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778703910|ref|XP_011655448.1|4.2e-33100.00PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus][more]
gi|659072795|ref|XP_008467101.1|8.8e-3194.67PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo][more]
gi|823158187|ref|XP_012478961.1|1.6e-0857.14PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii][more]
gi|590696774|ref|XP_007045256.1|1.0e-0754.29Uncharacterized protein TCM_011040 [Theobroma cacao][more]
gi|763747922|gb|KJB15361.1|1.4e-0754.29hypothetical protein B456_002G172500 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.012190.1Cucsa.012190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34780FAMILY NOT NAMEDcoord: 17..75
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.012190Cla003953Watermelon (97103) v1cgywmB363
Cucsa.012190Csa5G561250Cucumber (Chinese Long) v2cgycuB286
Cucsa.012190MELO3C005274Melon (DHL92) v3.5.1cgymeB337
Cucsa.012190ClCG01G006530Watermelon (Charleston Gray)cgywcgB342
Cucsa.012190CSPI05G19210Wild cucumber (PI 183967)cgycpiB296
Cucsa.012190Lsi09G006860Bottle gourd (USVL1VR-Ls)cgylsiB315
Cucsa.012190Cp4.1LG01g18320Cucurbita pepo (Zucchini)cgycpeB0523
Cucsa.012190MELO3C005274.2Melon (DHL92) v3.6.1cgymedB332
Cucsa.012190CsaV3_5G028140Cucumber (Chinese Long) v3cgycucB300
Cucsa.012190Cla97C01G006840Watermelon (97103) v2cgywmbB344
Cucsa.012190Bhi12G000818Wax gourdcgywgoB386
Cucsa.012190Carg26056Silver-seed gourdcarcgyB0493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.012190Melon (DHL92) v3.6.1cgymedB330
Cucsa.012190Silver-seed gourdcarcgyB1071
Cucsa.012190Watermelon (97103) v2cgywmbB343
Cucsa.012190Wax gourdcgywgoB387
Cucsa.012190Cucurbita maxima (Rimu)cgycmaB0541
Cucsa.012190Cucurbita maxima (Rimu)cgycmaB0544
Cucsa.012190Cucurbita moschata (Rifu)cgycmoB0542
Cucsa.012190Cucurbita moschata (Rifu)cgycmoB0545
Cucsa.012190Melon (DHL92) v3.5.1cgymeB335
Cucsa.012190Watermelon (Charleston Gray)cgywcgB341
Cucsa.012190Watermelon (97103) v1cgywmB361
Cucsa.012190Watermelon (97103) v1cgywmB362
Cucsa.012190Cucurbita pepo (Zucchini)cgycpeB0521
Cucsa.012190Bottle gourd (USVL1VR-Ls)cgylsiB316