ClCG01G006530 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G006530
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionmRNA, clone: RTFL01-09-C22
LocationCG_Chr01 : 7376147 .. 7376386 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Protein sequence

MENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
Homology
[Close]
BLAST of ClCG01G006530 vs. TrEMBL
Match: A0A0A0KPB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-24
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1 

Query: 8  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 67
          +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 68 GLAAERPISVGN 80
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

[Close]
BLAST of ClCG01G006530 vs. TrEMBL
Match: A0A061E8X1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-10
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 2  ENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKP 61
          EN+++    A   ++    +PIHSQV KIK+E EKIKHPSL+Q++M    +LR   I++ 
Sbjct: 11 ENSSSNNISAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADMRR--VLR--EITRQ 70

Query: 62 RSRSPLGLAAERPISVGN 80
          RSRSPLGL AERPISVGN
Sbjct: 71 RSRSPLGL-AERPISVGN 83

[Close]
BLAST of ClCG01G006530 vs. TrEMBL
Match: A0A0D2RM82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 15  DSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERP 74
           + +   +PIHSQV KIK+E EKIKHPSLQQ +M    +LR   I++ RSRSPLGL AERP
Sbjct: 45  EDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRR--VLR--EITRQRSRSPLGL-AERP 104

Query: 75  ISVGN 80
           ISVGN
Sbjct: 105 ISVGN 104

[Close]
BLAST of ClCG01G006530 vs. TrEMBL
Match: B9HJF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13370g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1 

Query: 13 DSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAE 72
          D D      PIHSQV KI++E +KIKHPSLQQ E+   +  R   I++ RSRSPLGL AE
Sbjct: 16 DGDHGYVGFPIHSQVIKIRQEFDKIKHPSLQQLEVRGVVKCR---INRQRSRSPLGL-AE 75

Query: 73 RPISVGN 80
          RPISVGN
Sbjct: 76 RPISVGN 78

[Close]
BLAST of ClCG01G006530 vs. TrEMBL
Match: A0A067L0U5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04753 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 16 SDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPI 75
          S+   +PIH+QV KIK+E EKIKHPSL+Q+EM   +      IS  RSRSPLGL AERPI
Sbjct: 13 SEYVGVPIHNQVIKIKQEFEKIKHPSLKQTEMRRVI----CKISGERSRSPLGL-AERPI 71

Query: 76 SVGN 80
          SVGN
Sbjct: 73 SVGN 71

[Close]
BLAST of ClCG01G006530 vs. TAIR10
Match: AT1G67920.1 (AT1G67920.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.2e-10
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 1 

Query: 23 IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN 80
          IHSQVEKIKKE EKI+ PSLQQ EM    +L  I   + RSRSPLGL  ER ISVGN
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRR--VLSEIK-RRQRSRSPLGL-GERSISVGN 67

[Close]
BLAST of ClCG01G006530 vs. TAIR10
Match: AT1G24600.1 (AT1G24600.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 8.0e-09
Identity = 39/71 (54.93%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 11 ASDSDSDVSQLPI-HSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGL 70
          A+  D     +PI HSQV KIK+E EKI+HPSL+Q EM   L+ R I +   RSRSPLGL
Sbjct: 5  ANHGDDVQESVPIIHSQVVKIKREFEKIQHPSLKQPEM--PLVFREI-MGPRRSRSPLGL 64

Query: 71 A-AERPISVGN 80
             ER I VGN
Sbjct: 65 GERERSIPVGN 72

[Close]
BLAST of ClCG01G006530 vs. NCBI nr
Match: gi|659072795|ref|XP_008467101.1| (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1 

Query: 8  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 67
          +T A DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 68 GLAAERPISVGN 80
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

[Close]
BLAST of ClCG01G006530 vs. NCBI nr
Match: gi|778703910|ref|XP_011655448.1| (PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-24
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1 

Query: 8  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 67
          +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 68 GLAAERPISVGN 80
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

[Close]
BLAST of ClCG01G006530 vs. NCBI nr
Match: gi|590696774|ref|XP_007045256.1| (Uncharacterized protein TCM_011040 [Theobroma cacao])

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 2  ENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKP 61
          EN+++    A   ++    +PIHSQV KIK+E EKIKHPSL+Q++M    +LR   I++ 
Sbjct: 11 ENSSSNNISAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADMRR--VLR--EITRQ 70

Query: 62 RSRSPLGLAAERPISVGN 80
          RSRSPLGL AERPISVGN
Sbjct: 71 RSRSPLGL-AERPISVGN 83

[Close]
BLAST of ClCG01G006530 vs. NCBI nr
Match: gi|1009154831|ref|XP_015895384.1| (PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 21 LPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN 80
          +P+HSQV KIK+E EKI+HPSLQQ EM   +LLR    ++ RSRSPLGL AERPISVGN
Sbjct: 19 VPVHSQVMKIKQEFEKIRHPSLQQPEMR-RVLLR--DFNRQRSRSPLGL-AERPISVGN 73

[Close]
BLAST of ClCG01G006530 vs. NCBI nr
Match: gi|823158187|ref|XP_012478961.1| (PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 15  DSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERP 74
           + +   +PIHSQV KIK+E EKIKHPSLQQ +M    +LR   I++ RSRSPLGL AERP
Sbjct: 45  EDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRR--VLR--EITRQRSRSPLGL-AERP 104

Query: 75  ISVGN 80
           ISVGN
Sbjct: 105 ISVGN 104

The following BLAST results are available for this feature:
BLAST of ClCG01G006530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPB9_CUCSA2.0e-2483.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1[more]
A0A061E8X1_THECC2.8e-1055.13Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1[more]
A0A0D2RM82_GOSRA1.1e-0963.08Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1[more]
B9HJF8_POPTR4.0e-0959.70Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13370g PE=4 SV=1[more]
A0A067L0U5_JATCU4.0e-0962.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04753 PE=4 SV=1[more]
BLAST of ClCG01G006530 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67920.17.2e-1066.67 unknown protein[more]
AT1G24600.18.0e-0954.93 unknown protein[more]
BLAST of ClCG01G006530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072795|ref|XP_008467101.1|5.2e-2686.11PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo][more]
gi|778703910|ref|XP_011655448.1|2.8e-2483.33PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus][more]
gi|590696774|ref|XP_007045256.1|4.0e-1055.13Uncharacterized protein TCM_011040 [Theobroma cacao][more]
gi|1009154831|ref|XP_015895384.1|1.5e-0967.80PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba][more]
gi|823158187|ref|XP_012478961.1|1.5e-0963.08PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G006530.1ClCG01G006530.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34780FAMILY NOT NAMEDcoord: 1..79
score: 4.1
NoneNo IPR availablePANTHERPTHR34780:SF2SUBFAMILY NOT NAMEDcoord: 1..79
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G006530Csa5G561250Cucumber (Chinese Long) v2cuwcgB368
ClCG01G006530MELO3C005274Melon (DHL92) v3.5.1mewcgB019
ClCG01G006530Cla003953Watermelon (97103) v1wcgwmB143
ClCG01G006530Cla97C01G006840Watermelon (97103) v2wcgwmbB089
ClCG01G006530Bhi12G000818Wax gourdwcgwgoB191
ClCG01G006530CSPI05G19210Wild cucumber (PI 183967)cpiwcgB383
ClCG01G006530Cucsa.012190Cucumber (Gy14) v1cgywcgB342
ClCG01G006530Lsi09G006860Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G006530Cp4.1LG01g18320Cucurbita pepo (Zucchini)cpewcgB373
ClCG01G006530MELO3C005274.2Melon (DHL92) v3.6.1medwcgB017
ClCG01G006530Carg26056Silver-seed gourdcarwcgB0420
ClCG01G006530CsaV3_5G028140Cucumber (Chinese Long) v3cucwcgB389
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G006530Melon (DHL92) v3.6.1medwcgB018
ClCG01G006530Silver-seed gourdcarwcgB0170
ClCG01G006530Silver-seed gourdcarwcgB0856
ClCG01G006530Silver-seed gourdcarwcgB0928
ClCG01G006530Cucumber (Chinese Long) v3cucwcgB394
ClCG01G006530Watermelon (97103) v2wcgwmbB120
ClCG01G006530Cucumber (Gy14) v1cgywcgB341
ClCG01G006530Cucumber (Gy14) v1cgywcgB484
ClCG01G006530Cucurbita moschata (Rifu)cmowcgB638
ClCG01G006530Cucurbita maxima (Rimu)cmawcgB257
ClCG01G006530Cucurbita maxima (Rimu)cmawcgB634
ClCG01G006530Cucurbita maxima (Rimu)cmawcgB636
ClCG01G006530Cucurbita maxima (Rimu)cmawcgB638
ClCG01G006530Cucurbita moschata (Rifu)cmowcgB245
ClCG01G006530Cucurbita moschata (Rifu)cmowcgB636
ClCG01G006530Cucurbita moschata (Rifu)cmowcgB640
ClCG01G006530Wild cucumber (PI 183967)cpiwcgB388
ClCG01G006530Cucumber (Chinese Long) v2cuwcgB372
ClCG01G006530Cucurbita pepo (Zucchini)cpewcgB169
ClCG01G006530Cucurbita pepo (Zucchini)cpewcgB370
ClCG01G006530Cucurbita pepo (Zucchini)cpewcgB371
ClCG01G006530Cucumber (Gy14) v2cgybwcgB336
ClCG01G006530Cucumber (Gy14) v2cgybwcgB340