Cla003953 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003953
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 6825747 .. 6825986 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Protein sequence

MENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

Homology

[Close]

BLAST of Cla003953 vs. TrEMBL
Match: A0A0A0KPB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-24
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 8  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 67
          +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 68 GLAAERPISVGN 80
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

[Close]

BLAST of Cla003953 vs. TrEMBL
Match: A0A061E8X1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-10
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 2  ENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKP 61
          EN+++    A   ++    +PIHSQV KIK+E EKIKHPSL+Q++M    +LR   I++ 
Sbjct: 11 ENSSSNNISAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADMRR--VLR--EITRQ 70

Query: 62 RSRSPLGLAAERPISVGN 80
          RSRSPLGL AERPISVGN
Sbjct: 71 RSRSPLGL-AERPISVGN 83

[Close]

BLAST of Cla003953 vs. TrEMBL
Match: A0A0D2RM82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 15  DSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERP 74
           + +   +PIHSQV KIK+E EKIKHPSLQQ +M    +LR   I++ RSRSPLGL AERP
Sbjct: 45  EDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRR--VLR--EITRQRSRSPLGL-AERP 104

Query: 75  ISVGN 80
           ISVGN
Sbjct: 105 ISVGN 104

[Close]

BLAST of Cla003953 vs. TrEMBL
Match: B9HJF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13370g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 13 DSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAE 72
          D D      PIHSQV KI++E +KIKHPSLQQ E+   +  R   I++ RSRSPLGL AE
Sbjct: 16 DGDHGYVGFPIHSQVIKIRQEFDKIKHPSLQQLEVRGVVKCR---INRQRSRSPLGL-AE 75

Query: 73 RPISVGN 80
          RPISVGN
Sbjct: 76 RPISVGN 78

[Close]

BLAST of Cla003953 vs. TrEMBL
Match: A0A067L0U5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04753 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 16 SDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPI 75
          S+   +PIH+QV KIK+E EKIKHPSL+Q+EM   +      IS  RSRSPLGL AERPI
Sbjct: 13 SEYVGVPIHNQVIKIKQEFEKIKHPSLKQTEMRRVI----CKISGERSRSPLGL-AERPI 71

Query: 76 SVGN 80
          SVGN
Sbjct: 73 SVGN 71

[Close]

BLAST of Cla003953 vs. NCBI nr
Match: gi|659072795|ref|XP_008467101.1| (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 8  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 67
          +T A DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 68 GLAAERPISVGN 80
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

[Close]

BLAST of Cla003953 vs. NCBI nr
Match: gi|778703910|ref|XP_011655448.1| (PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-24
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 8  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 67
          +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 68 GLAAERPISVGN 80
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

[Close]

BLAST of Cla003953 vs. NCBI nr
Match: gi|590696774|ref|XP_007045256.1| (Uncharacterized protein TCM_011040 [Theobroma cacao])

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 2  ENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKP 61
          EN+++    A   ++    +PIHSQV KIK+E EKIKHPSL+Q++M    +LR   I++ 
Sbjct: 11 ENSSSNNISAIRDEAGYKGVPIHSQVMKIKQEFEKIKHPSLRQADMRR--VLR--EITRQ 70

Query: 62 RSRSPLGLAAERPISVGN 80
          RSRSPLGL AERPISVGN
Sbjct: 71 RSRSPLGL-AERPISVGN 83

[Close]

BLAST of Cla003953 vs. NCBI nr
Match: gi|1009154831|ref|XP_015895384.1| (PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 21 LPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN 80
          +P+HSQV KIK+E EKI+HPSLQQ EM   +LLR    ++ RSRSPLGL AERPISVGN
Sbjct: 19 VPVHSQVMKIKQEFEKIRHPSLQQPEMR-RVLLR--DFNRQRSRSPLGL-AERPISVGN 73

[Close]

BLAST of Cla003953 vs. NCBI nr
Match: gi|823158187|ref|XP_012478961.1| (PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 15  DSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERP 74
           + +   +PIHSQV KIK+E EKIKHPSLQQ +M    +LR   I++ RSRSPLGL AERP
Sbjct: 45  EDEYKGVPIHSQVMKIKQEFEKIKHPSLQQPDMRR--VLR--EITRQRSRSPLGL-AERP 104

Query: 75  ISVGN 80
           ISVGN
Sbjct: 105 ISVGN 104

The following BLAST results are available for this feature:

BLAST of Cla003953 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPB9_CUCSA	2.0e-24	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G561250 PE=4 SV=1	[more]
A0A061E8X1_THECC	2.8e-10	55.13	Uncharacterized protein OS=Theobroma cacao GN=TCM_011040 PE=4 SV=1	[more]
A0A0D2RM82_GOSRA	1.1e-09	63.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G156500 PE=4 SV=1	[more]
B9HJF8_POPTR	4.0e-09	59.70	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13370g PE=4 SV=1	[more]
A0A067L0U5_JATCU	4.0e-09	62.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04753 PE=4 SV=1	[more]

BLAST of Cla003953 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072795\|ref\|XP_008467101.1\|	5.2e-26	86.11	PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo]	[more]
gi\|778703910\|ref\|XP_011655448.1\|	2.8e-24	83.33	PREDICTED: uncharacterized protein LOC105435535 [Cucumis sativus]	[more]
gi\|590696774\|ref\|XP_007045256.1\|	4.0e-10	55.13	Uncharacterized protein TCM_011040 [Theobroma cacao]	[more]
gi\|1009154831\|ref\|XP_015895384.1\|	1.5e-09	67.80	PREDICTED: uncharacterized protein LOC107429246 [Ziziphus jujuba]	[more]
gi\|823158187\|ref\|XP_012478961.1\|	1.5e-09	63.08	PREDICTED: uncharacterized protein LOC105794361 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU29252	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003953	Cla003953.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU29252	WMU29252	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 1..79 score: 4.1
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 1..79 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003953	Cla97C01G006840	Watermelon (97103) v2	wmwmbB236
Cla003953	Csa5G561250	Cucumber (Chinese Long) v2	cuwmB413
Cla003953	MELO3C005274	Melon (DHL92) v3.5.1	mewmB030
Cla003953	ClCG01G006530	Watermelon (Charleston Gray)	wcgwmB143
Cla003953	CSPI05G19210	Wild cucumber (PI 183967)	cpiwmB420
Cla003953	Cucsa.012190	Cucumber (Gy14) v1	cgywmB363
Cla003953	Lsi09G006860	Bottle gourd (USVL1VR-Ls)	lsiwmB028
Cla003953	Cp4.1LG01g18320	Cucurbita pepo (Zucchini)	cpewmB442
Cla003953	MELO3C005274.2	Melon (DHL92) v3.6.1	medwmB029
Cla003953	Carg26056	Silver-seed gourd	carwmB0424
Cla003953	CsaV3_5G028140	Cucumber (Chinese Long) v3	cucwmB438
Cla003953	Bhi12G000818	Wax gourd	wgowmB075

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003953	Silver-seed gourd	carwmB0169
Cla003953	Silver-seed gourd	carwmB0883
Cla003953	Silver-seed gourd	carwmB0954
Cla003953	Cucumber (Chinese Long) v3	cucwmB441
Cla003953	Watermelon (97103) v2	wmwmbB278
Cla003953	Cucumber (Gy14) v1	cgywmB362
Cla003953	Cucumber (Gy14) v1	cgywmB512
Cla003953	Cucurbita maxima (Rimu)	cmawmB273
Cla003953	Cucurbita maxima (Rimu)	cmawmB710
Cla003953	Cucurbita maxima (Rimu)	cmawmB713
Cla003953	Cucurbita maxima (Rimu)	cmawmB714
Cla003953	Cucurbita moschata (Rifu)	cmowmB263
Cla003953	Cucurbita moschata (Rifu)	cmowmB706
Cla003953	Cucurbita moschata (Rifu)	cmowmB708
Cla003953	Cucurbita moschata (Rifu)	cmowmB710
Cla003953	Cucumber (Chinese Long) v2	cuwmB416
Cla003953	Cucurbita pepo (Zucchini)	cpewmB188
Cla003953	Cucurbita pepo (Zucchini)	cpewmB440
Cla003953	Cucumber (Gy14) v2	cgybwmB386
Cla003953	Cucumber (Gy14) v2	cgybwmB389
Cla003953	Melon (DHL92) v3.6.1	medwmB028