Carg26056 (gene) Silver-seed gourd

Overview
NameCarg26056
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionmRNA, clone: RTFL01-09-C22
LocationCucurbita_argyrosperma_scaffold_258 : 165951 .. 166175 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACTCGACGGCGGTCGCCGATGCCGGTTTGGACTCTCAGGCTCCGGTTCACATCCAGGTTGTGAAGATCAAGCGGGAGATTGAGAAGATCAAGCATCCCTCCCTTCAGCAATCCGAGATGAGCACTCATCTTCTTCTTCGCGACATGTCGATTTCCAAACCGCGACCTCGCTCCCCGCTAGGGCTCGCTGCTGAGAGGTCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACTCGACGGCGGTCGCCGATGCCGGTTTGGACTCTCAGGCTCCGGTTCACATCCAGGTTGTGAAGATCAAGCGGGAGATTGAGAAGATCAAGCATCCCTCCCTTCAGCAATCCGAGATGAGCACTCATCTTCTTCTTCGCGACATGTCGATTTCCAAACCGCGACCTCGCTCCCCGCTAGGGCTCGCTGCTGAGAGGTCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACTCGACGGCGGTCGCCGATGCCGGTTTGGACTCTCAGGCTCCGGTTCACATCCAGGTTGTGAAGATCAAGCGGGAGATTGAGAAGATCAAGCATCCCTCCCTTCAGCAATCCGAGATGAGCACTCATCTTCTTCTTCGCGACATGTCGATTTCCAAACCGCGACCTCGCTCCCCGCTAGGGCTCGCTGCTGAGAGGTCTATTTCCGTCGGGAATTAA

Protein sequence

MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSISVGN
Homology
[Close]
BLAST of Carg26056 vs. NCBI nr
Match: XP_022921904.1 (uncharacterized protein LOC111430025 isoform X1 [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS
Sbjct: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60

Query: 61 PLGLAAERSISVGN 75
          PLGLAAERSISVGN
Sbjct: 61 PLGLAAERSISVGN 74

[Close]
BLAST of Carg26056 vs. NCBI nr
Match: XP_023511992.1 (uncharacterized protein LOC111776834 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 8.2e-30
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          MEN TAVAD GLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS
Sbjct: 1  MENPTAVADGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60

Query: 61 PLGLAAERSISVGN 75
          PLGLAAERSISVGN
Sbjct: 61 PLGLAAERSISVGN 74

[Close]
BLAST of Carg26056 vs. NCBI nr
Match: XP_023523054.1 (uncharacterized protein LOC111787191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          MEN TAVAD GLDSQAPVHIQVVKIK+EIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS
Sbjct: 1  MENPTAVADGGLDSQAPVHIQVVKIKKEIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60

Query: 61 PLGLAAERSISVGN 75
          PLGLAAERSISVGN
Sbjct: 61 PLGLAAERSISVGN 74

[Close]
BLAST of Carg26056 vs. NCBI nr
Match: XP_022921910.1 (uncharacterized protein LOC111430025 isoform X2 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 12 LDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSIS 71
          +DSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSIS
Sbjct: 1  MDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSIS 60

Query: 72 VGN 75
          VGN
Sbjct: 61 VGN 63

[Close]
BLAST of Carg26056 vs. NCBI nr
Match: XP_022990554.1 (uncharacterized protein LOC111487401 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 12 LDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSIS 71
          +DSQAPVHIQVVKIKREIEKIKHPSLQQSEM+THLLLRDMSISKPRPRSPLGLAAERSIS
Sbjct: 1  MDSQAPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRDMSISKPRPRSPLGLAAERSIS 60

Query: 72 VGN 75
          VGN
Sbjct: 61 VGN 63

[Close]
BLAST of Carg26056 vs. TAIR10
Match: AT1G24600.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 5.7e-09
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          ME      D   +S   +H QVVKIKRE EKI+HPSL+Q EM   L+ R++ +   R RS
Sbjct: 1  MEKKANHGDDVQESVPIIHSQVVKIKREFEKIQHPSLKQPEMP--LVFREI-MGPRRSRS 60

Query: 61 PLGLA-AERSISVGN 75
          PLGL   ERSI VGN
Sbjct: 61 PLGLGERERSIPVGN 72

[Close]
BLAST of Carg26056 vs. TAIR10
Match: AT1G67920.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-08
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          MEN T   D G +    +H QV KIK+E EKI+ PSLQQ EM    +L ++   + R RS
Sbjct: 1  MENKT---DNGNEDGPIIHSQVEKIKKEFEKIRQPSLQQPEM--RRVLSEIK-RRQRSRS 60

Query: 61 PLGLAAERSISVGN 75
          PLGL  ERSISVGN
Sbjct: 61 PLGL-GERSISVGN 67

[Close]
BLAST of Carg26056 vs. TrEMBL
Match: tr|A0A1S4E6T1|A0A1S4E6T1_CUCME (uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-17
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MENSTAVADAGLD-SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60
          M+ STA  D+  + SQ P+H QV KIK+EIEKIKHPSLQQS+M+THLLLR +SISKPR R
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLAAERSISVGN 75
          SPLGL ++  ISVGN
Sbjct: 61 SPLGLPSDTPISVGN 75

[Close]
BLAST of Carg26056 vs. TrEMBL
Match: tr|A0A0A0KPB9|A0A0A0KPB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 1  MENSTAVADAGLD-SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60
          M+ S A  D+  + S  P+H QV KIK+EIEKIKHPSLQQS+M+THLLLR +SISKPR R
Sbjct: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLAAERSISVGN 75
          SPLGL ++ SISVGN
Sbjct: 61 SPLGLPSDTSISVGN 75

[Close]
BLAST of Carg26056 vs. TrEMBL
Match: tr|A0A2N9HB83|A0A2N9HB83_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36783 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 17 PVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSISVGN 75
          PVH+QV+KIK+EIEKIKHPSLQ+ EM   +LLR  +  +  P SPLGL AERSISVGN
Sbjct: 26 PVHLQVIKIKQEIEKIKHPSLQEPEM-RRVLLRGFTRLQRSP-SPLGLLAERSISVGN 81

[Close]
BLAST of Carg26056 vs. TrEMBL
Match: tr|A0A1R3JGN0|A0A1R3JGN0_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_16580 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 3  NSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPL 62
          NS A+ D       P+H QV+K+K+E EKIKHPSLQQ++M    +LR+  I++ R RSPL
Sbjct: 18 NSIAIRDEDGYKGVPIHSQVMKVKQEFEKIKHPSLQQADM--RRVLRE--INRQRSRSPL 77

Query: 63 GLAAERSISVGN 75
          GL AER ISVGN
Sbjct: 78 GL-AERPISVGN 84

[Close]
BLAST of Carg26056 vs. TrEMBL
Match: tr|D7KAL2|D7KAL2_ARALL (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_890209 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 1  MENSTAVADAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRS 60
          ME      D G +S  P+H QVVKIKRE EKI+HPSL+Q EM   L+LR++ +   R RS
Sbjct: 1  MEKKANHGDDGHESVPPIHSQVVKIKREFEKIQHPSLKQPEMP--LVLREI-MGPRRSRS 60

Query: 61 PLGLA-AERSISVGN 75
          PLGL   ERSI VGN
Sbjct: 61 PLGLGERERSIPVGN 72

The following BLAST results are available for this feature:
BLAST of Carg26056 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921904.17.5e-31100.00uncharacterized protein LOC111430025 isoform X1 [Cucurbita moschata][more]
XP_023511992.18.2e-3097.30uncharacterized protein LOC111776834 [Cucurbita pepo subsp. pepo][more]
XP_023523054.11.8e-2995.95uncharacterized protein LOC111787191 [Cucurbita pepo subsp. pepo][more]
XP_022921910.11.8e-2498.41uncharacterized protein LOC111430025 isoform X2 [Cucurbita moschata][more]
XP_022990554.14.0e-2496.83uncharacterized protein LOC111487401 [Cucurbita maxima][more]
BLAST of Carg26056 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24600.15.7e-0952.00unknown protein[more]
AT1G67920.11.7e-0852.70unknown protein[more]
BLAST of Carg26056 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg26056 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E6T1|A0A1S4E6T1_CUCME3.1e-1768.00uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=... [more]
tr|A0A0A0KPB9|A0A0A0KPB9_CUCSA1.5e-1666.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1[more]
tr|A0A2N9HB83|A0A2N9HB83_FAGSY9.1e-0967.24Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36783 PE=4 SV=1[more]
tr|A0A1R3JGN0|A0A1R3JGN0_9ROSI5.9e-0855.56Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_16580 PE=4 SV=1[more]
tr|D7KAL2|D7KAL2_ARALL5.9e-0856.00Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26056-RACarg26056-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..74
NoneNo IPR availablePANTHERPTHR34780FAMILY NOT NAMEDcoord: 12..74
NoneNo IPR availablePANTHERPTHR34780:SF2SUBFAMILY NOT NAMEDcoord: 12..74

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg26056Cla003953Watermelon (97103) v1carwmB0424
Carg26056Csa5G561250Cucumber (Chinese Long) v2carcuB0460
Carg26056MELO3C005274Melon (DHL92) v3.5.1carmeB0435
Carg26056ClCG01G006530Watermelon (Charleston Gray)carwcgB0420
Carg26056CSPI05G19210Wild cucumber (PI 183967)carcpiB0466
Carg26056Cucsa.012190Cucumber (Gy14) v1carcgyB0493
Carg26056Lsi09G006860Bottle gourd (USVL1VR-Ls)carlsiB388
Carg26056Cp4.1LG01g18320Cucurbita pepo (Zucchini)carcpeB0600
Carg26056MELO3C005274.2Melon (DHL92) v3.6.1carmedB0437
Carg26056CsaV3_5G028140Cucumber (Chinese Long) v3carcucB0461
Carg26056Cla97C01G006840Watermelon (97103) v2carwmbB0451
Carg26056Bhi12G000818Wax gourdcarwgoB0513
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg26056Wax gourdcarwgoB0512
Carg26056Silver-seed gourdcarcarB229
Carg26056Silver-seed gourdcarcarB440
Carg26056Cucumber (Gy14) v2carcgybB0436
Carg26056Cucumber (Gy14) v2carcgybB0437
Carg26056Cucumber (Gy14) v2carcgybB0435
Carg26056Cucumber (Gy14) v1carcgyB0494
Carg26056Cucumber (Gy14) v1carcgyB0495
Carg26056Cucurbita maxima (Rimu)carcmaB0594
Carg26056Cucurbita maxima (Rimu)carcmaB0593
Carg26056Cucurbita maxima (Rimu)carcmaB0595
Carg26056Cucurbita moschata (Rifu)carcmoB0578
Carg26056Cucurbita moschata (Rifu)carcmoB0579
Carg26056Cucurbita moschata (Rifu)carcmoB0580
Carg26056Cucurbita pepo (Zucchini)carcpeB0599
Carg26056Wild cucumber (PI 183967)carcpiB0464
Carg26056Wild cucumber (PI 183967)carcpiB0465
Carg26056Cucumber (Chinese Long) v2carcuB0459
Carg26056Cucumber (Chinese Long) v2carcuB0461
Carg26056Cucumber (Chinese Long) v3carcucB0460
Carg26056Bottle gourd (USVL1VR-Ls)carlsiB387
Carg26056Melon (DHL92) v3.5.1carmeB0436
Carg26056Melon (DHL92) v3.6.1carmedB0438
Carg26056Watermelon (Charleston Gray)carwcgB0419
Carg26056Watermelon (97103) v1carwmB0423
Carg26056Watermelon (97103) v2carwmbB0450