CmoCh11G016110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G016110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 11526598 .. 11529284 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATAAGGTAATATTTCACCAAAGAATATAATCCATTTGAAAAAAAAAATCATTTATTTACTAAATTGGCACGTTGGCTCGGTGTAATAGCTCAAACTCACAGCTTATATTGTCCGTTTTGGCCCGTTACGTATCGGGTCTGATTTTAAAATACGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCCCCCTTCAACCGATGTGAGATCTCACAATCCACCTCTTTGGGGCCTAGCGTCCTCGTTGACGCGTCCTCGTTGGCACATCGCTCGGTGTCTAGCTCTAATAACATTTGTAACAACACAAACCTACTGCTAACAAATATTGTCCACTTTGACTCGTTACGTATCGTCGTTAGTCTCACGATTTTAAAATGCATCTACTAGGGAAAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCCCCCTTCAAACCGAGGTGAGACCTCACAATCCACCTCTTTAGGGTCTAGCTCTAATAACATTTGTAACAGCACAAGCCTACTGCTAACAAATATTGTCCACTTTGGCTCGTTACGTATCGTCGTCAGTCTCACGATTTTAAAACGCATCTACTAGGGAAAGGTTTCCACACTCTTAAGGAATGTTTTGTTCCCCCTCTAACCGATGTGAGACCTCACAATCCACCTCTTTAGGGTCTAGCGTCCTCGTTGGCACATCGCTCGGTGTCTAGCTCTAATAACATTTGTAATAGCCAAGCCTACTGCTAACAAATATTGTCCGCTTTGGCTCGTTACGTATTGTAGTCAGTCTCACAATTTTAAAACGCATCTACTCTTATAAGAAATATTTTGTTTCCTTCTCCAACGGTATTGGAATTGTAAATTTTTTCCTCATAATGTTTCGAGTTCGTTGAATCACAACGTTTGGTTTGAATAACTACTACTTTTTTTGGTTTCAGTCGTTAAACTATAGTTTTTGTCTACTTATCGTTGAACAGGCTTCTGAATTTTTAATTTTATGTCTAATAAATCGCTAATTTATTCAAAACGGTAAAAGTTAATCGATTAATCTCGGCTATAAAACTGCAAAATAAGTCAGGTTTTCAATCACGAGCTCACAAGCTCAATAAGATTTTTTGTGATATCTCTTTTTTAAAGTTACTTTTTCTTTAAAGTATATTCTCACAAATAGTCTATTCTCAGTTCAAATTTATATTTAAAATATTATAACGGGTTTGAGTATCATATGACATCATTAGAGTATTAGTCAGCGGTGCTCATCGAAGTTTTCATCAAAGTTAGTCGTCAACGATGTGCATAGGACACGGCTTCAAAGGTTGTCGCTAGAGGTAGTTATCAGAGTTGATCATGCAATGGTGGTTGCTAGAGTTATCGTTGGAATAGTTTCTAGACTCGAGTCATTGGTGGTGCTATGGTGATCGCTAGCGAGCCCGTTAGTGTGAGAATATTTCGGTCAGTTTCATAAATCAAACAAGACTTGTTCAAATGACTCGATAACTAGATCACCTCGGATTACCTAACCCAAACCATTAAGATTGGGTCGATTTTTTTTTTCTTTCTAAAATTTGGGTTGGTAGGCAGGTTGACATTTTTTTTATCCCGTCAATCCAACGAACCCAAAAATATGGTTACAACCTAACCCTACTCTACTTTTAAGATTATTATCTTGATTAAGAATATTTGACTTTTGTAATCGATAGCAGTGACACATTGTGAATGATTGATATTTAAAATTAATAATAATAAATAAAAAAAAACAACGTGACAACCCAACCTAACCCAAAAATAAATGATTTGAGTTCGGATGTAAACTCTATTCAGATCACTCAGGCCACTAACTCAATCGATCCGCAGATTGGTTTAAAAGATTTCTCCAACCCAACTCATATATACACTCGTAAACCAAACCGACCCAAATTTATAGGGCAACAACCTGACACAAGAAATATATATATATGTGATGTCCCACATTGGTTGGGGAGAAGAACAAACCACCATTTATAAGGGTGTAGAAACCTTCCCCTAGCAGACGCGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCCCCTAGTGGTGGATCTAGGGTCGTTACAAATGGTATCAGAGTCAGACATGCCAGCTTTCTTGTTCCCCGAAAGGGTGGATTGTGATGTCCCACATTGGTTGGGTTAGCGGTGGATCTAAGCCGTTACAAATTGTAACGGCCTAGATCTACCGTGCTTTTCAAGTGAAAGAATAAAAAATAATAATAAAAAAAAAATTATCCAATCAATTATTCCTTCATTCCATAAAGCGTACGTAAATTTGTATATAAATATCCCCACCATTTTGCTTATCAGAAATTCAAAGCGGAGAGGTTTCACGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACAGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAACCTATATGGAATTGTCGCTGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGACAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAA

mRNA sequence

ATGAACATAAGAAATTCAAAGCGGAGAGGTTTCACGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACAGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAACCTATATGGAATTGTCGCTGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGACAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAA

Coding sequence (CDS)

ATGAACATAAGAAATTCAAAGCGGAGAGGTTTCACGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACAGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAACCTATATGGAATTGTCGCTGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGACAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAA

Homology

[Close]

BLAST of CmoCh11G016110 vs. TrEMBL
Match: A0A0A0LVE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-32
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 9   RGFTMPFYKQYKGTKTKPTGLVGYVFHRDY--AISPHNVALLVHENPGPDTAVTRDSLTQ 68
           RG  MPFYKQY G+KTK TGLVGYVFHR+   ++S HN+ LLV ++PG DT  TRDSL+Q
Sbjct: 13  RGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLSQ 72

Query: 69  FDNLYGIVADEGIDVKAANYISSTLARFKSLNELT-PTEILSPPL 111
           FD  YGI+ADEG+DVKAANYISSTLARFKSLNEL  P E+ S PL
Sbjct: 73  FDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPL 117

[Close]

BLAST of CmoCh11G016110 vs. TrEMBL
Match: A0A067LN74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 48/111 (43.24%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 5   NSKRRGFT----MPFYKQYKGTKT-------KPT------GLVGYVFHRDYAISP--HNV 64
           N KRRGF     +PFY+  K T T       KP+        VG+V H+DY I+P    V
Sbjct: 4   NRKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPPKQKV 63

Query: 65  ALLVHENPGPDTAVTRDS-LTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
           + +V     P     RD  L+QFD LYG+  DEG+D+KAA YISS   RFK
Sbjct: 64  SFIV-----PTADSNRDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]

BLAST of CmoCh11G016110 vs. TrEMBL
Match: A0A0D2RZX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085600 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-08
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 1


Query: 5   NSKRRGF----TMPFYKQYKG-------TKTKP------TGLVGYVFHRDYAIS-PHNVA 64
           NSKRRGF      PFY+  KG       +K KP      +  + +  H+DY IS P  ++
Sbjct: 4   NSKRRGFFKGKLTPFYRAVKGVPTRQYSSKVKPNQGSSTSASISFRVHQDYMISQPKQIS 63

Query: 65  LLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
            +V   PG      R+ L+Q DN +G+  DE +D+KAA YISS   RFK
Sbjct: 64  YIV---PGDKN---REKLSQIDNFFGVTGDESVDIKAATYISSVQERFK 106

[Close]

BLAST of CmoCh11G016110 vs. TrEMBL
Match: A0A0D2Q4X1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 44/114 (38.60%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 5   NSKRRGFTM----PFYKQYKGT-------KTKP------TGLVGYVFHRDYAIS-PHNVA 64
           N K RGF      P Y+  K T       K KP      T  VG+  HRDY IS P  ++
Sbjct: 4   NRKGRGFIKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPKKIS 63

Query: 65  LLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFKSLNEL 101
            +V  +        R++L Q DN +G+V DE +D+KAA YISS   RFK   +L
Sbjct: 64  FVVPADKN------RENLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQL 111

[Close]

BLAST of CmoCh11G016110 vs. TrEMBL
Match: A0A061EDX7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017245 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 2   NIRNSKRRGFTM----PFYKQYKGT-------------KTKPTGLVGYVFHRDYAIS-PH 61
           ++ N KRRGF      PFY+  K               +T  T  V +  H+DY +S P 
Sbjct: 3   SMSNRKRRGFIKGKLAPFYRAAKPAAAAMQYTTKVMPNQTSTTASVSFRVHQDYMVSQPK 62

Query: 62  NVALLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
            V+ ++  +        R++L+Q DN +G+  DE +D+KAA+YISS   RFK
Sbjct: 63  QVSFILPADKN------RENLSQIDNFFGVAGDESVDIKAASYISSVQERFK 108

[Close]

BLAST of CmoCh11G016110 vs. NCBI nr
Match: gi|700209701|gb|KGN64797.1| (hypothetical protein Csa_1G097750 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-32
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 9   RGFTMPFYKQYKGTKTKPTGLVGYVFHRDY--AISPHNVALLVHENPGPDTAVTRDSLTQ 68
           RG  MPFYKQY G+KTK TGLVGYVFHR+   ++S HN+ LLV ++PG DT  TRDSL+Q
Sbjct: 13  RGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLSQ 72

Query: 69  FDNLYGIVADEGIDVKAANYISSTLARFKSLNELT-PTEILSPPL 111
           FD  YGI+ADEG+DVKAANYISSTLARFKSLNEL  P E+ S PL
Sbjct: 73  FDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPL 117

[Close]

BLAST of CmoCh11G016110 vs. NCBI nr
Match: gi|802539270|ref|XP_012070196.1| (PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 48/111 (43.24%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 5   NSKRRGFT----MPFYKQYKGTKT-------KPT------GLVGYVFHRDYAISP--HNV 64
           N KRRGF     +PFY+  K T T       KP+        VG+V H+DY I+P    V
Sbjct: 4   NRKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPPKQKV 63

Query: 65  ALLVHENPGPDTAVTRDS-LTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
           + +V     P     RD  L+QFD LYG+  DEG+D+KAA YISS   RFK
Sbjct: 64  SFIV-----PTADSNRDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]

BLAST of CmoCh11G016110 vs. NCBI nr
Match: gi|823251612|ref|XP_012458447.1| (PREDICTED: uncharacterized protein LOC105779215 [Gossypium raimondii])

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-08
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 1


Query: 5   NSKRRGF----TMPFYKQYKG-------TKTKP------TGLVGYVFHRDYAIS-PHNVA 64
           NSKRRGF      PFY+  KG       +K KP      +  + +  H+DY IS P  ++
Sbjct: 4   NSKRRGFFKGKLTPFYRAVKGVPTRQYSSKVKPNQGSSTSASISFRVHQDYMISQPKQIS 63

Query: 65  LLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
            +V   PG      R+ L+Q DN +G+  DE +D+KAA YISS   RFK
Sbjct: 64  YIV---PGDKN---REKLSQIDNFFGVTGDESVDIKAATYISSVQERFK 106

[Close]

BLAST of CmoCh11G016110 vs. NCBI nr
Match: gi|823127868|ref|XP_012440416.1| (PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 44/114 (38.60%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 5   NSKRRGFTM----PFYKQYKGT-------KTKP------TGLVGYVFHRDYAIS-PHNVA 64
           N K RGF      P Y+  K T       K KP      T  VG+  HRDY IS P  ++
Sbjct: 4   NRKGRGFIKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPKKIS 63

Query: 65  LLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFKSLNEL 101
            +V  +        R++L Q DN +G+V DE +D+KAA YISS   RFK   +L
Sbjct: 64  FVVPADKN------RENLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQL 111

[Close]

BLAST of CmoCh11G016110 vs. NCBI nr
Match: gi|590647478|ref|XP_007031912.1| (Uncharacterized protein TCM_017245 [Theobroma cacao])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 2   NIRNSKRRGFTM----PFYKQYKGT-------------KTKPTGLVGYVFHRDYAIS-PH 61
           ++ N KRRGF      PFY+  K               +T  T  V +  H+DY +S P 
Sbjct: 3   SMSNRKRRGFIKGKLAPFYRAAKPAAAAMQYTTKVMPNQTSTTASVSFRVHQDYMVSQPK 62

Query: 62  NVALLVHENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKAANYISSTLARFK 96
            V+ ++  +        R++L+Q DN +G+  DE +D+KAA+YISS   RFK
Sbjct: 63  QVSFILPADKN------RENLSQIDNFFGVAGDESVDIKAASYISSVQERFK 108

The following BLAST results are available for this feature:

BLAST of CmoCh11G016110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G016110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE7_CUCSA	2.9e-32	70.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1	[more]
A0A067LN74_JATCU	4.0e-10	43.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1	[more]
A0A0D2RZX2_GOSRA	3.8e-08	39.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085600 PE=4 SV=1	[more]
A0A0D2Q4X1_GOSRA	1.4e-07	38.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1	[more]
A0A061EDX7_THECC	1.2e-06	33.93	Uncharacterized protein OS=Theobroma cacao GN=TCM_017245 PE=4 SV=1	[more]

BLAST of CmoCh11G016110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G016110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209701\|gb\|KGN64797.1\|	4.1e-32	70.48	hypothetical protein Csa_1G097750 [Cucumis sativus]	[more]
gi\|802539270\|ref\|XP_012070196.1\|	5.8e-10	43.24	PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas]	[more]
gi\|823251612\|ref\|XP_012458447.1\|	5.4e-08	39.45	PREDICTED: uncharacterized protein LOC105779215 [Gossypium raimondii]	[more]
gi\|823127868\|ref\|XP_012440416.1\|	2.1e-07	38.60	PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii]	[more]
gi\|590647478\|ref\|XP_007031912.1\|	1.7e-06	33.93	Uncharacterized protein TCM_017245 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G016110.1	CmoCh11G016110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G016110	Cucsa.054080	Cucumber (Gy14) v1	cgycmoB0061
CmoCh11G016110	CmaCh11G015100	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G016110	Cla004079	Watermelon (97103) v1	cmowmB102
CmoCh11G016110	MELO3C014892	Melon (DHL92) v3.5.1	cmomeB129
CmoCh11G016110	ClCG05G013580	Watermelon (Charleston Gray)	cmowcgB112
CmoCh11G016110	CSPI03G25480	Wild cucumber (PI 183967)	cmocpiB112
CmoCh11G016110	Lsi07G014800	Bottle gourd (USVL1VR-Ls)	cmolsiB139
CmoCh11G016110	Cp4.1LG04g06000	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G016110	MELO3C014892.2	Melon (DHL92) v3.6.1	cmomedB137
CmoCh11G016110	CsaV3_3G026960	Cucumber (Chinese Long) v3	cmocucB0126
CmoCh11G016110	Cla97C05G095110	Watermelon (97103) v2	cmowmbB114
CmoCh11G016110	Bhi01G001615	Wax gourd	cmowgoB0105
CmoCh11G016110	CsGy3G023910	Cucumber (Gy14) v2	cgybcmoB264
CmoCh11G016110	Carg15557	Silver-seed gourd	carcmoB0502

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G016110	Bottle gourd (USVL1VR-Ls)	cmolsiB133
CmoCh11G016110	Cucumber (Gy14) v2	cgybcmoB032
CmoCh11G016110	Melon (DHL92) v3.6.1	cmomedB120
CmoCh11G016110	Silver-seed gourd	carcmoB0495
CmoCh11G016110	Silver-seed gourd	carcmoB0589
CmoCh11G016110	Cucumber (Chinese Long) v3	cmocucB0094
CmoCh11G016110	Watermelon (97103) v2	cmowmbB124
CmoCh11G016110	Cucurbita moschata (Rifu)	cmocmoB042
CmoCh11G016110	Cucurbita moschata (Rifu)	cmocmoB079
CmoCh11G016110	Cucurbita moschata (Rifu)	cmocmoB092
CmoCh11G016110	Cucurbita maxima (Rimu)	cmacmoB116
CmoCh11G016110	Cucurbita maxima (Rimu)	cmacmoB243
CmoCh11G016110	Cucumber (Chinese Long) v2	cmocuB110
CmoCh11G016110	Cucurbita pepo (Zucchini)	cmocpeB111
CmoCh11G016110	Cucurbita pepo (Zucchini)	cmocpeB124
CmoCh11G016110	Cucurbita pepo (Zucchini)	cmocpeB131