Cucsa.054080 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.054080
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold00582 : 384791 .. 385293 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTATACAGTCTCAAAAGAAGTTTGTGTAGAAGAAGAGAAATTGATCGATGGAGGCAAACAAAAGAAAACTTAGAGGCTTCATGAGAGGGAAATTGATGCCTTTCTACAAGCAATATAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTCCATAGGGAGTGCTATAGTAGTGTTTCTCAACATAACATTGGTTTATTGGTGCAGGATGACCCCGGTCGGGACACGACGGCCACTCGTGACTCATTAAGTCAGTTTGATCGTTCATATGGAATCATAGCTGACGAAGGTGTCGATGTAAAGGCAGCAAATTATATTTCCTCCACGTTAGCAAGATTCAAAAGCTTGAATGAGTTACCTCATCCAATAGAATTGTCGTCGATTCCATTGCCCCACCAATAGATTTGATGACCTTGTCGAGCACTTCTCTATTATTTATCTTGGACTTTACTAGTTGATTATTATTCTAAGTAAAGAACCGATGCTCATGTG

mRNA sequence

GCTTTATACAGTCTCAAAAGAAGTTTGTGTAGAAGAAGAGAAATTGATCGATGGAGGCAAACAAAAGAAAACTTAGAGGCTTCATGAGAGGGAAATTGATGCCTTTCTACAAGCAATATAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTCCATAGGGAGTGCTATAGTAGTGTTTCTCAACATAACATTGGTTTATTGGTGCAGGATGACCCCGGTCGGGACACGACGGCCACTCGTGACTCATTAAGTCAGTTTGATCGTTCATATGGAATCATAGCTGACGAAGGTGTCGATGTAAAGGCAGCAAATTATATTTCCTCCACGTTAGCAAGATTCAAAAGCTTGAATGAGTTACCTCATCCAATAGAATTGTCGTCGATTCCATTGCCCCACCAATAGATTTGATGACCTTGTCGAGCACTTCTCTATTATTTATCTTGGACTTTACTAGTTGATTATTATTCTAAGTAAAGAACCGATGCTCATGTG

Coding sequence (CDS)

ATGGAGGCAAACAAAAGAAAACTTAGAGGCTTCATGAGAGGGAAATTGATGCCTTTCTACAAGCAATATAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTCCATAGGGAGTGCTATAGTAGTGTTTCTCAACATAACATTGGTTTATTGGTGCAGGATGACCCCGGTCGGGACACGACGGCCACTCGTGACTCATTAAGTCAGTTTGATCGTTCATATGGAATCATAGCTGACGAAGGTGTCGATGTAAAGGCAGCAAATTATATTTCCTCCACGTTAGCAAGATTCAAAAGCTTGAATGAGTTACCTCATCCAATAGAATTGTCGTCGATTCCATTGCCCCACCAATAG

Protein sequence

MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ*

Homology

[Close]

BLAST of Cucsa.054080 vs. TrEMBL
Match: A0A0A0LVE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG 60
           MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG
Sbjct: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG 60

Query: 61  RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ 120
           RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ
Sbjct: 61  RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ 120

[Close]

BLAST of Cucsa.054080 vs. TrEMBL
Match: A0A067LN74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-11
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQ-------------TGLVGYVFHRECYSSVS 60
           ME+N RK RGFM+GKL+PFY+    + T Q                VG+V H++   +  
Sbjct: 1   MESN-RKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPP 60

Query: 61  QHNIGLLVQD-DPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFK 102
           +  +  +V   D  RD       LSQFD+ YG+  DEGVD+KAA YISS   RFK
Sbjct: 61  KQKVSFIVPTADSNRDKY-----LSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]

BLAST of Cucsa.054080 vs. TrEMBL
Match: B9N0Y5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09720g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYK---------QYNGS-KTKQTG----LVGYVFHRECYSSV 60
           ME+N RK RGFM+GKLM FY+         QY+   K  QT      V YV H++   + 
Sbjct: 1   MESN-RKRRGFMKGKLMRFYRSSSKSSSNVQYSSKVKPSQTSPTIASVAYVVHQDFTIAQ 60

Query: 61  SQHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFK 102
            +  +   V     R      D LSQFD+ +G++ D  +D KA +YISS   RFK
Sbjct: 61  QKQKVSFTVPASDNR-----HDKLSQFDKFFGVVGDVRIDNKATSYISSVQERFK 109

[Close]

BLAST of Cucsa.054080 vs. TrEMBL
Match: A0A0D2Q4X1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYKQY---------NGSKTKQ----TGLVGYVFHRECYSSVS 60
           M++N RK RGF++GKL P Y+           N +K  Q    T  VG+  HR+ Y    
Sbjct: 1   MDSN-RKGRGFIKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRD-YMISQ 60

Query: 61  QHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNEL 107
              I  +V  D  R+      +L+Q D  +G++ DE VD+KAA YISS   RFK   +L
Sbjct: 61  PKKISFVVPADKNRE------NLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQL 111

[Close]

BLAST of Cucsa.054080 vs. TrEMBL
Match: A9PEI2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33590g PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-07
Identity = 48/116 (41.38%), Postives = 61/116 (52.59%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYK---------QYNGSKTKQ------TGLVGYVFHRECYSS 60
           ME+N RK +GF +GKLM FY+         QY+ SK K       T  VGYV H    + 
Sbjct: 1   MESN-RKRKGFTKGKLMLFYRSSPKPSSNVQYS-SKVKPSQTSPTTASVGYVNHDYMIAP 60

Query: 61  VSQHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFK 102
             Q  +  +V   P  D    RD LSQFD+ +G++ D  VD KA +YISS   RFK
Sbjct: 61  QKQ-KVSFIV---PAADNH--RDKLSQFDKFFGVVGDVSVDTKATSYISSVQERFK 108

[Close]

BLAST of Cucsa.054080 vs. NCBI nr
Match: gi|700209701|gb|KGN64797.1| (hypothetical protein Csa_1G097750 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.3e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG 60
           MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG
Sbjct: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG 60

Query: 61  RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ 120
           RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ
Sbjct: 61  RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ 120

[Close]

BLAST of Cucsa.054080 vs. NCBI nr
Match: gi|802539270|ref|XP_012070196.1| (PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas])

HSP 1 Score: 75.5 bits (184), Expect = 7.2e-11
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQ-------------TGLVGYVFHRECYSSVS 60
           ME+N RK RGFM+GKL+PFY+    + T Q                VG+V H++   +  
Sbjct: 1   MESN-RKRRGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPP 60

Query: 61  QHNIGLLVQD-DPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFK 102
           +  +  +V   D  RD       LSQFD+ YG+  DEGVD+KAA YISS   RFK
Sbjct: 61  KQKVSFIVPTADSNRDKY-----LSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]

BLAST of Cucsa.054080 vs. NCBI nr
Match: gi|566212463|ref|XP_006373214.1| (hypothetical protein POPTR_0017s09720g [Populus trichocarpa])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYK---------QYNGS-KTKQTG----LVGYVFHRECYSSV 60
           ME+N RK RGFM+GKLM FY+         QY+   K  QT      V YV H++   + 
Sbjct: 1   MESN-RKRRGFMKGKLMRFYRSSSKSSSNVQYSSKVKPSQTSPTIASVAYVVHQDFTIAQ 60

Query: 61  SQHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFK 102
            +  +   V     R      D LSQFD+ +G++ D  +D KA +YISS   RFK
Sbjct: 61  QKQKVSFTVPASDNR-----HDKLSQFDKFFGVVGDVRIDNKATSYISSVQERFK 109

[Close]

BLAST of Cucsa.054080 vs. NCBI nr
Match: gi|823127868|ref|XP_012440416.1| (PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii])

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYKQY---------NGSKTKQ----TGLVGYVFHRECYSSVS 60
           M++N RK RGF++GKL P Y+           N +K  Q    T  VG+  HR+ Y    
Sbjct: 1   MDSN-RKGRGFIKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRD-YMISQ 60

Query: 61  QHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNEL 107
              I  +V  D  R+      +L+Q D  +G++ DE VD+KAA YISS   RFK   +L
Sbjct: 61  PKKISFVVPADKNRE------NLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQL 111

[Close]

BLAST of Cucsa.054080 vs. NCBI nr
Match: gi|224060275|ref|XP_002300118.1| (hypothetical protein POPTR_0001s33590g [Populus trichocarpa])

HSP 1 Score: 62.4 bits (150), Expect = 6.3e-07
Identity = 48/116 (41.38%), Postives = 61/116 (52.59%), Query Frame = 1


Query: 1   MEANKRKLRGFMRGKLMPFYK---------QYNGSKTKQ------TGLVGYVFHRECYSS 60
           ME+N RK +GF +GKLM FY+         QY+ SK K       T  VGYV H    + 
Sbjct: 1   MESN-RKRKGFTKGKLMLFYRSSPKPSSNVQYS-SKVKPSQTSPTTASVGYVNHDYMIAP 60

Query: 61  VSQHNIGLLVQDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFK 102
             Q  +  +V   P  D    RD LSQFD+ +G++ D  VD KA +YISS   RFK
Sbjct: 61  QKQ-KVSFIV---PAADNH--RDKLSQFDKFFGVVGDVSVDTKATSYISSVQERFK 108

The following BLAST results are available for this feature:

BLAST of Cucsa.054080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE7_CUCSA	3.7e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1	[more]
A0A067LN74_JATCU	5.0e-11	40.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1	[more]
B9N0Y5_POPTR	1.5e-07	38.26	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09720g PE=4 SV=1	[more]
A0A0D2Q4X1_GOSRA	3.4e-07	36.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1	[more]
A9PEI2_POPTR	4.4e-07	41.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33590g PE=2 SV=1	[more]

BLAST of Cucsa.054080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209701\|gb\|KGN64797.1\|	5.3e-62	100.00	hypothetical protein Csa_1G097750 [Cucumis sativus]	[more]
gi\|802539270\|ref\|XP_012070196.1\|	7.2e-11	40.87	PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas]	[more]
gi\|566212463\|ref\|XP_006373214.1\|	2.2e-07	38.26	hypothetical protein POPTR_0017s09720g [Populus trichocarpa]	[more]
gi\|823127868\|ref\|XP_012440416.1\|	4.8e-07	36.97	PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii]	[more]
gi\|224060275\|ref\|XP_002300118.1\|	6.3e-07	41.38	hypothetical protein POPTR_0001s33590g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.054080.1	Cucsa.054080.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.054080	Cla004079	Watermelon (97103) v1	cgywmB041
Cucsa.054080	MELO3C014892	Melon (DHL92) v3.5.1	cgymeB037
Cucsa.054080	ClCG05G013580	Watermelon (Charleston Gray)	cgywcgB043
Cucsa.054080	CSPI03G25480	Wild cucumber (PI 183967)	cgycpiB039
Cucsa.054080	CmaCh11G015100	Cucurbita maxima (Rimu)	cgycmaB0065
Cucsa.054080	CmoCh11G016110	Cucurbita moschata (Rifu)	cgycmoB0061
Cucsa.054080	Lsi07G014800	Bottle gourd (USVL1VR-Ls)	cgylsiB042
Cucsa.054080	Cp4.1LG04g06000	Cucurbita pepo (Zucchini)	cgycpeB0063
Cucsa.054080	MELO3C014892.2	Melon (DHL92) v3.6.1	cgymedB037
Cucsa.054080	CsaV3_3G026960	Cucumber (Chinese Long) v3	cgycucB040
Cucsa.054080	Cla97C05G095110	Watermelon (97103) v2	cgywmbB041
Cucsa.054080	Bhi01G001615	Wax gourd	cgywgoB043
Cucsa.054080	Carg15557	Silver-seed gourd	carcgyB0425

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.054080	Silver-seed gourd	carcgyB0500
Cucsa.054080	Cucurbita maxima (Rimu)	cgycmaB0066
Cucsa.054080	Cucurbita moschata (Rifu)	cgycmoB0062
Cucsa.054080	Cucumber (Chinese Long) v2	cgycuB038
Cucsa.054080	Cucurbita pepo (Zucchini)	cgycpeB0062