ClCG05G013580 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G013580
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 19388611 .. 19388946 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCAAACAGTAAAAAACTCAGAGGCTTCATGAGAGGGAAGTTGAAGCCTTTCTACAAGCAATACAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTTCATAGGGACTACAGTAATATTTCTCAACACAACATTGCTTTACTTGTGCAGGATAACCCCGAACGGGACACGACCACGGCTCGTGACTCGTTAACTCAATTTGATCGTTTGTATGGAATCGTAGCTGACGAAGGTGTTGATGTAAAGGCTGCAAATTATATTTCCTCCACGCTAGCACGGTTCAAAGGCTCAAATGAGTTAACTCTGAACCGAGAGATTTAA

mRNA sequence

ATGGAGGCAAACAGTAAAAAACTCAGAGGCTTCATGAGAGGGAAGTTGAAGCCTTTCTACAAGCAATACAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTTCATAGGGACTACAGTAATATTTCTCAACACAACATTGCTTTACTTGTGCAGGATAACCCCGAACGGGACACGACCACGGCTCGTGACTCGTTAACTCAATTTGATCGTTTGTATGGAATCGTAGCTGACGAAGGTGTTGATGTAAAGGCTGCAAATTATATTTCCTCCACGCTAGCACGGTTCAAAGGCTCAAATGAGTTAACTCTGAACCGAGAGATTTAA

Coding sequence (CDS)

ATGGAGGCAAACAGTAAAAAACTCAGAGGCTTCATGAGAGGGAAGTTGAAGCCTTTCTACAAGCAATACAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTTCATAGGGACTACAGTAATATTTCTCAACACAACATTGCTTTACTTGTGCAGGATAACCCCGAACGGGACACGACCACGGCTCGTGACTCGTTAACTCAATTTGATCGTTTGTATGGAATCGTAGCTGACGAAGGTGTTGATGTAAAGGCTGCAAATTATATTTCCTCCACGCTAGCACGGTTCAAAGGCTCAAATGAGTTAACTCTGAACCGAGAGATTTAA

Protein sequence

MEANSKKLRGFMRGKLKPFYKQYNGSKTKQTGLVGYVFHRDYSNISQHNIALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFKGSNELTLNREI
Homology
[Close]
BLAST of ClCG05G013580 vs. TrEMBL
Match: A0A0A0LVE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-42
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 1 

Query: 1   MEANSKKLRGFMRGKLKPFYKQYNGSKTKQTGLVGYVFHRD-YSNISQHNIALLVQDNPE 60
           MEAN +KLRGFMRGKL PFYKQYNGSKTKQTGLVGYVFHR+ YS++SQHNI LLVQD+P 
Sbjct: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG 60

Query: 61  RDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFKGSNEL 106
           RDTT  RDSL+QFDR YGI+ADEGVDVKAANYISSTLARFK  NEL
Sbjct: 61  RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNEL 106

[Close]
BLAST of ClCG05G013580 vs. TrEMBL
Match: A0A067LN74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-11
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 1   MEANSKKLRGFMRGKLKPFYKQYNGSKTKQ-------------TGLVGYVFHRDYS-NIS 60
           ME+N K+ RGFM+GKL PFY+    + T Q                VG+V H+DY     
Sbjct: 1   MESNRKR-RGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPP 60

Query: 61  QHNIALLVQDNPERDTTTARDS-LTQFDRLYGIVADEGVDVKAANYISSTLARFK 101
           +  ++ +V   P  D+   RD  L+QFD+LYG+  DEGVD+KAA YISS   RFK
Sbjct: 61  KQKVSFIV---PTADSN--RDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]
BLAST of ClCG05G013580 vs. TrEMBL
Match: A0A0D2RZX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085600 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 1 

Query: 1   MEANSKKLRGFMRGKLKPFYKQYNGSKTKQ-------------TGLVGYVFHRDYSNISQ 60
           ME NSK+ RGF +GKL PFY+   G  T+Q             +  + +  H+DY     
Sbjct: 1   MEFNSKR-RGFFKGKLTPFYRAVKGVPTRQYSSKVKPNQGSSTSASISFRVHQDYMISQP 60

Query: 61  HNIALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFK 101
             I+ +V  +        R+ L+Q D  +G+  DE VD+KAA YISS   RFK
Sbjct: 61  KQISYIVPGDKN------REKLSQIDNFFGVTGDESVDIKAATYISSVQERFK 106

[Close]
BLAST of ClCG05G013580 vs. TrEMBL
Match: A0A0D2Q4X1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-09
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 1 

Query: 4   NSKKLRGFMRGKLKPFYKQY---------NGSKTKQ----TGLVGYVFHRDYSNISQHNI 63
           +++K RGF++GKL P Y+           N +K  Q    T  VG+  HRDY       I
Sbjct: 3   SNRKGRGFIKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPKKI 62

Query: 64  ALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFKGSNELTLN 109
           + +V  +  R+      +L Q D  +G+V DE VD+KAA YISS   RFK   +L  N
Sbjct: 63  SFVVPADKNRE------NLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQLCTN 114

[Close]
BLAST of ClCG05G013580 vs. TrEMBL
Match: A0A061EDX7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017245 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 1 

Query: 4   NSKKLRGFMRGKLKPFYK---------QYNG----SKTKQTGLVGYVFHRDYSNISQHNI 63
           +++K RGF++GKL PFY+         QY      ++T  T  V +  H+DY       +
Sbjct: 5   SNRKRRGFIKGKLAPFYRAAKPAAAAMQYTTKVMPNQTSTTASVSFRVHQDYMVSQPKQV 64

Query: 64  ALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFK 101
           + ++  +        R++L+Q D  +G+  DE VD+KAA+YISS   RFK
Sbjct: 65  SFILPADKN------RENLSQIDNFFGVAGDESVDIKAASYISSVQERFK 108

[Close]
BLAST of ClCG05G013580 vs. NCBI nr
Match: gi|700209701|gb|KGN64797.1| (hypothetical protein Csa_1G097750 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 1 

Query: 1   MEANSKKLRGFMRGKLKPFYKQYNGSKTKQTGLVGYVFHRD-YSNISQHNIALLVQDNPE 60
           MEAN +KLRGFMRGKL PFYKQYNGSKTKQTGLVGYVFHR+ YS++SQHNI LLVQD+P 
Sbjct: 1   MEANKRKLRGFMRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPG 60

Query: 61  RDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFKGSNEL 106
           RDTT  RDSL+QFDR YGI+ADEGVDVKAANYISSTLARFK  NEL
Sbjct: 61  RDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNEL 106

[Close]
BLAST of ClCG05G013580 vs. NCBI nr
Match: gi|802539270|ref|XP_012070196.1| (PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas])

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 1   MEANSKKLRGFMRGKLKPFYKQYNGSKTKQ-------------TGLVGYVFHRDYS-NIS 60
           ME+N K+ RGFM+GKL PFY+    + T Q                VG+V H+DY     
Sbjct: 1   MESNRKR-RGFMKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPP 60

Query: 61  QHNIALLVQDNPERDTTTARDS-LTQFDRLYGIVADEGVDVKAANYISSTLARFK 101
           +  ++ +V   P  D+   RD  L+QFD+LYG+  DEGVD+KAA YISS   RFK
Sbjct: 61  KQKVSFIV---PTADSN--RDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]
BLAST of ClCG05G013580 vs. NCBI nr
Match: gi|823251612|ref|XP_012458447.1| (PREDICTED: uncharacterized protein LOC105779215 [Gossypium raimondii])

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 1 

Query: 1   MEANSKKLRGFMRGKLKPFYKQYNGSKTKQ-------------TGLVGYVFHRDYSNISQ 60
           ME NSK+ RGF +GKL PFY+   G  T+Q             +  + +  H+DY     
Sbjct: 1   MEFNSKR-RGFFKGKLTPFYRAVKGVPTRQYSSKVKPNQGSSTSASISFRVHQDYMISQP 60

Query: 61  HNIALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFK 101
             I+ +V  +        R+ L+Q D  +G+  DE VD+KAA YISS   RFK
Sbjct: 61  KQISYIVPGDKN------REKLSQIDNFFGVTGDESVDIKAATYISSVQERFK 106

[Close]
BLAST of ClCG05G013580 vs. NCBI nr
Match: gi|823127868|ref|XP_012440416.1| (PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii])

HSP 1 Score: 68.6 bits (166), Expect = 8.1e-09
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 1 

Query: 4   NSKKLRGFMRGKLKPFYKQY---------NGSKTKQ----TGLVGYVFHRDYSNISQHNI 63
           +++K RGF++GKL P Y+           N +K  Q    T  VG+  HRDY       I
Sbjct: 3   SNRKGRGFIKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPKKI 62

Query: 64  ALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFKGSNELTLN 109
           + +V  +  R+      +L Q D  +G+V DE VD+KAA YISS   RFK   +L  N
Sbjct: 63  SFVVPADKNRE------NLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQLCTN 114

[Close]
BLAST of ClCG05G013580 vs. NCBI nr
Match: gi|590647478|ref|XP_007031912.1| (Uncharacterized protein TCM_017245 [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 1 

Query: 4   NSKKLRGFMRGKLKPFYK---------QYNG----SKTKQTGLVGYVFHRDYSNISQHNI 63
           +++K RGF++GKL PFY+         QY      ++T  T  V +  H+DY       +
Sbjct: 5   SNRKRRGFIKGKLAPFYRAAKPAAAAMQYTTKVMPNQTSTTASVSFRVHQDYMVSQPKQV 64

Query: 64  ALLVQDNPERDTTTARDSLTQFDRLYGIVADEGVDVKAANYISSTLARFK 101
           + ++  +        R++L+Q D  +G+  DE VD+KAA+YISS   RFK
Sbjct: 65  SFILPADKN------RENLSQIDNFFGVAGDESVDIKAASYISSVQERFK 108

The following BLAST results are available for this feature:
BLAST of ClCG05G013580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVE7_CUCSA1.0e-4283.96Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1[more]
A0A067LN74_JATCU4.6e-1142.61Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1[more]
A0A0D2RZX2_GOSRA4.3e-0936.28Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085600 PE=4 SV=1[more]
A0A0D2Q4X1_GOSRA5.6e-0936.44Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1[more]
A0A061EDX7_THECC6.2e-0833.64Uncharacterized protein OS=Theobroma cacao GN=TCM_017245 PE=4 SV=1[more]
BLAST of ClCG05G013580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209701|gb|KGN64797.1|1.5e-4283.96hypothetical protein Csa_1G097750 [Cucumis sativus][more]
gi|802539270|ref|XP_012070196.1|6.6e-1142.61PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas][more]
gi|823251612|ref|XP_012458447.1|6.2e-0936.28PREDICTED: uncharacterized protein LOC105779215 [Gossypium raimondii][more]
gi|823127868|ref|XP_012440416.1|8.1e-0936.44PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii][more]
gi|590647478|ref|XP_007031912.1|8.9e-0833.64Uncharacterized protein TCM_017245 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G013580.1ClCG05G013580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G013580MELO3C014892Melon (DHL92) v3.5.1mewcgB427
ClCG05G013580Cla004079Watermelon (97103) v1wcgwmB285
ClCG05G013580Cla97C05G095110Watermelon (97103) v2wcgwmbB229
ClCG05G013580Bhi01G001615Wax gourdwcgwgoB429
ClCG05G013580CSPI03G25480Wild cucumber (PI 183967)cpiwcgB239
ClCG05G013580Cucsa.054080Cucumber (Gy14) v1cgywcgB043
ClCG05G013580CmaCh11G015100Cucurbita maxima (Rimu)cmawcgB120
ClCG05G013580CmoCh11G016110Cucurbita moschata (Rifu)cmowcgB112
ClCG05G013580Cp4.1LG04g06000Cucurbita pepo (Zucchini)cpewcgB613
ClCG05G013580CsGy3G023910Cucumber (Gy14) v2cgybwcgB216
ClCG05G013580MELO3C014892.2Melon (DHL92) v3.6.1medwcgB425
ClCG05G013580Carg15557Silver-seed gourdcarwcgB0361
ClCG05G013580CsaV3_3G026960Cucumber (Chinese Long) v3cucwcgB240
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G013580Silver-seed gourdcarwcgB0428
ClCG05G013580Cucumber (Chinese Long) v3cucwcgB072
ClCG05G013580Watermelon (97103) v2wcgwmbB236
ClCG05G013580Watermelon (97103) v2wcgwmbB241
ClCG05G013580Watermelon (Charleston Gray)wcgwcgB157
ClCG05G013580Cucurbita maxima (Rimu)cmawcgB231
ClCG05G013580Cucurbita moschata (Rifu)cmowcgB215
ClCG05G013580Wild cucumber (PI 183967)cpiwcgB068
ClCG05G013580Cucumber (Chinese Long) v2cuwcgB065
ClCG05G013580Cucumber (Chinese Long) v2cuwcgB232
ClCG05G013580Melon (DHL92) v3.5.1mewcgB252
ClCG05G013580Watermelon (97103) v1wcgwmB310
ClCG05G013580Cucurbita pepo (Zucchini)cpewcgB332
ClCG05G013580Cucurbita pepo (Zucchini)cpewcgB555
ClCG05G013580Bottle gourd (USVL1VR-Ls)lsiwcgB369
ClCG05G013580Bottle gourd (USVL1VR-Ls)lsiwcgB400
ClCG05G013580Cucumber (Gy14) v2cgybwcgB062
ClCG05G013580Melon (DHL92) v3.6.1medwcgB244