CsGy3G023910 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G023910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 23914023 .. 23915320 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTAATCCTCTCTACAACATCCCCACCATATTAAGTAGCTTTATACAGTCTCAAAAGAAGTTTGTGTAGAAGAAGAGAAATTGATCGATGGAGGCAAACAAAAGAAAACTTAGAGGCTTCATGAGAGGGAAATTGATGCCTTTCTACAAGCAATATAATGGAAGCAAAACAAAGCAAACTGGTTTGGTTGGCTATGTCTTCCATAGGGAGTGCTATAGTAGTGTTTCTCAACATAACATTGGTTTATTGGTGCAGGATGACCCCGGTCGGGACACGACGGCCACTCGTGACTCATTAAGTCAGTTTGATCGTTCATATGGAATCATAGCTGACGAAGGTGTCGATGTAAAGGCAGCAAATTATATTTCCTCCACGTTAGCAAGATTCAAAAGCTTGAATGAGTTACCTCATCCAATAGAATTGTCGTCGATTCCATTGCCCCACCAATAGATTTGATGACCTTGTCGAGCACTTCTCTATTATTTATCTTGGACTTTACTAGTTGATTATTATTCTAAGTAAAGAACCGATGCTCATGTGGTTGGATATAGTGTTTCTCTCACGTATATAGAAGGTTTGAATCCCCACCTTTTATATATTTATAATGAAAAAAAACTTGAATGCATCTTCTCATATATTTCTTATCTCTCCATATACAAAAATAAACGTACCAAATATTTATAAAAAAAGTTGTCTTTGTGGTGGAGAGATGGAAAGCATTTGAGGATGCAACTAACCCTTTTATAATTATAATTTTATCACAAAACTATTTTATGATTGCATAAGCTGCAATTTAATTTAAATAAACATTCCATCATCAATAATTGACTCTTTAAAATATATGTTAAGTTGGAACTTTGACAGTTGAATTTTAAATGTTGTGTATTTTATCTAATAGATTATCTTGTTAACTATCAATTTTTTCTACACATATCTCGATCATTTTTTAAGTTATTGTACTCTCAAGAATCTTTGAACTTTAAATGTGTTTAATATGTGCAAAACCTTAAACTTTAAATTTGTCTGATAGGGAGCTTTCGGTTTGATATGTAAGCTTCTAAAACTCACTACTACAAATTTAGCCTTCTTTGATGTGCAAAACATGTCAAAAAATATCTACCTTGATAGTCTTTGTGCATCAAGTAGCCAGACATCAAGAAAGTTCGACCATCAGAAAACTAGTTTTCTTGATGGTATTGGCCATCAAGAAATGAGACTTTGATGTTTTTTGTCCGTCAAGAAAAGTGAATAGTCCATCAAGAATTTTTTGGATTTGAATCCGGGACTTCTTGTCCAC

mRNA sequence

CTCTAATCCTCTCTACAACATCCCCACCATATTAAGTAGCTTTATACAGTCTCAAAAGAAGTTTGTGTAGAAGAAGAGAAATTGATCGATGGAGGCAAACAAAAGAAAACTTAGAGGCTTCATGAGAGGGAAATTGATGCCTTTCTACAAGCAATATAATGGAAGCAAAACAAAGCAAACTGGATGACCCCGGTCGGGACACGACGGCCACTCGTGACTCATTAAGTCAGTTTGATCGTTCATATGGAATCATAGCTGACGAAGGTGTCGATGTAAAGGCAGCAAATTATATTTCCTCCACGTTAGCAAGATTCAAAAGCTTGAATGAGTTACCTCATCCAATAGAATTGTCGTCGATTCCATTGCCCCACCAATAGATTTGATGACCTTGTCGAGCACTTCTCTATTATTTATCTTGGACTTTACTAGTTGATTATTATTCTAAGTAAAGAACCGATGCTCATGTGGTTGGATATAGTGTTTCTCTCACGTATATAGAAGGTTTGAATCCCCACCTTTTATATATTTATAATGAAAAAAAACTTGAATGCATCTTCTCATATATTTCTTATCTCTCCATATACAAAAATAAACGTACCAAATATTTATAAAAAAAGTTGTCTTTGTGGTGGAGAGATGGAAAGCATTTGAGGATGCAACTAACCCTTTTATAATTATAATTTTATCACAAAACTATTTTATGATTGCATAAGCTGCAATTTAATTTAAATAAACATTCCATCATCAATAATTGACTCTTTAAAATATATGTTAAGTTGGAACTTTGACAGTTGAATTTTAAATGTTGTGTATTTTATCTAATAGATTATCTTGTTAACTATCAATTTTTTCTACACATATCTCGATCATTTTTTAAGTTATTGTACTCTCAAGAATCTTTGAACTTTAAATGTGTTTAATATGTGCAAAACCTTAAACTTTAAATTTGTCTGATAGGGAGCTTTCGGTTTGATATGTAAGCTTCTAAAACTCACTACTACAAATTTAGCCTTCTTTGATGTGCAAAACATGTCAAAAAATATCTACCTTGATAGTCTTTGTGCATCAAGTAGCCAGACATCAAGAAAGTTCGACCATCAGAAAACTAGTTTTCTTGATGGTATTGGCCATCAAGAAATGAGACTTTGATGTTTTTTGTCCGTCAAGAAAAGTGAATAGTCCATCAAGAATTTTTTGGATTTGAATCCGGGACTTCTTGTCCAC

Coding sequence (CDS)

ATGGAAGCAAAACAAAGCAAACTGGATGACCCCGGTCGGGACACGACGGCCACTCGTGACTCATTAAGTCAGTTTGATCGTTCATATGGAATCATAGCTGACGAAGGTGTCGATGTAAAGGCAGCAAATTATATTTCCTCCACGTTAGCAAGATTCAAAAGCTTGAATGAGTTACCTCATCCAATAGAATTGTCGTCGATTCCATTGCCCCACCAATAG

Protein sequence

MEAKQSKLDDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ
Homology
[Close]
BLAST of CsGy3G023910 vs. NCBI nr
Match: KGN64797.1 (hypothetical protein Csa_1G097750 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 4.9e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 9   DDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIP 68
           DDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIP
Sbjct: 57  DDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIP 116

Query: 69  LPHQ 73
           LPHQ
Sbjct: 117 LPHQ 120

[Close]
BLAST of CsGy3G023910 vs. TrEMBL
Match: tr|A0A0A0LVE7|A0A0A0LVE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 9   DDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIP 68
           DDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIP
Sbjct: 57  DDPGRDTTATRDSLSQFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIP 116

Query: 69  LPHQ 73
           LPHQ
Sbjct: 117 LPHQ 120

The following BLAST results are available for this feature:
BLAST of CsGy3G023910 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64797.14.9e-27100.00hypothetical protein Csa_1G097750 [Cucumis sativus][more]
BLAST of CsGy3G023910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G023910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G023910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVE7|A0A0A0LVE7_CUCSA3.2e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G023910.1CsGy3G023910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G023910Cla004079Watermelon (97103) v1cgybwmB231
CsGy3G023910MELO3C014892Melon (DHL92) v3.5.1cgybmeB213
CsGy3G023910ClCG05G013580Watermelon (Charleston Gray)cgybwcgB216
CsGy3G023910CSPI03G25480Wild cucumber (PI 183967)cgybcpiB110
CsGy3G023910CmaCh11G015100Cucurbita maxima (Rimu)cgybcmaB298
CsGy3G023910CmoCh11G016110Cucurbita moschata (Rifu)cgybcmoB264
CsGy3G023910Lsi07G014800Bottle gourd (USVL1VR-Ls)cgyblsiB223
CsGy3G023910Cp4.1LG04g06000Cucurbita pepo (Zucchini)cgybcpeB414
CsGy3G023910MELO3C014892.2Melon (DHL92) v3.6.1cgybmedB204
CsGy3G023910CsaV3_3G026960Cucumber (Chinese Long) v3cgybcucB117
CsGy3G023910Cla97C05G095110Watermelon (97103) v2cgybwmbB208
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G023910Cucumber (Gy14) v2cgybcgybB015
CsGy3G023910Cucumber (Gy14) v2cgybcgybB105
CsGy3G023910Cucurbita maxima (Rimu)cgybcmaB289
CsGy3G023910Cucurbita maxima (Rimu)cgybcmaB296
CsGy3G023910Cucurbita maxima (Rimu)cgybcmaB319
CsGy3G023910Cucurbita moschata (Rifu)cgybcmoB262
CsGy3G023910Cucurbita moschata (Rifu)cgybcmoB266
CsGy3G023910Cucurbita moschata (Rifu)cgybcmoB291
CsGy3G023910Cucurbita pepo (Zucchini)cgybcpeB361
CsGy3G023910Cucurbita pepo (Zucchini)cgybcpeB421
CsGy3G023910Cucurbita pepo (Zucchini)cgybcpeB407
CsGy3G023910Cucumber (Chinese Long) v2cgybcuB096
CsGy3G023910Cucumber (Chinese Long) v2cgybcuB111
CsGy3G023910Cucumber (Chinese Long) v2cgybcuB143
CsGy3G023910Bottle gourd (USVL1VR-Ls)cgyblsiB214
CsGy3G023910Melon (DHL92) v3.5.1cgybmeB165
CsGy3G023910Melon (DHL92) v3.6.1cgybmedB163
CsGy3G023910Watermelon (Charleston Gray)cgybwcgB229
CsGy3G023910Watermelon (Charleston Gray)cgybwcgB231
CsGy3G023910Watermelon (97103) v1cgybwmB263
CsGy3G023910Wild cucumber (PI 183967)cgybcpiB095
CsGy3G023910Wild cucumber (PI 183967)cgybcpiB146
CsGy3G023910Silver-seed gourdcarcgybB0375
CsGy3G023910Silver-seed gourdcarcgybB0443
CsGy3G023910Cucumber (Chinese Long) v3cgybcucB101
CsGy3G023910Watermelon (97103) v2cgybwmbB223
CsGy3G023910Wax gourdcgybwgoB273