CmaCh11G015100 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G015100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 9884694 .. 9885020 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGAAGCTGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCAGGACTATGCTATTTCTCCCCACAACGTTGCTTTGTTGGTGCGCGAGAACCCGGGCCCCGACACGGCGGTGACTCGGGACTCGTTGACTCAATTCGATAACCTATATGGAATCGTCGCCGATGAAGGTATCGATGTAAAGGTTGCAAACTATATTTCATCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGATAGAAATACTGTCTCCTCCGTTGGCTCATCGTGAAATTTAA

mRNA sequence

ATGAAAGGGAAGCTGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCAGGACTATGCTATTTCTCCCCACAACGTTGCTTTGTTGGTGCGCGAGAACCCGGGCCCCGACACGGCGGTGACTCGGGACTCGTTGACTCAATTCGATAACCTATATGGAATCGTCGCCGATGAAGGTATCGATGTAAAGGTTGCAAACTATATTTCATCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGATAGAAATACTGTCTCCTCCGTTGGCTCATCGTGAAATTTAA

Coding sequence (CDS)

ATGAAAGGGAAGCTGATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCAGGACTATGCTATTTCTCCCCACAACGTTGCTTTGTTGGTGCGCGAGAACCCGGGCCCCGACACGGCGGTGACTCGGGACTCGTTGACTCAATTCGATAACCTATATGGAATCGTCGCCGATGAAGGTATCGATGTAAAGGTTGCAAACTATATTTCATCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGATAGAAATACTGTCTCCTCCGTTGGCTCATCGTGAAATTTAA

Protein sequence

MKGKLMPFYKQYKGTKTKPTGLVGYVFHQDYAISPHNVALLVRENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFKSLNELTPIEILSPPLAHREI

Homology

[Close]

BLAST of CmaCh11G015100 vs. TrEMBL
Match: A0A0A0LVE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 76/109 (69.72%), Postives = 91/109 (83.49%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGTKTKPTGLVGYVFHQDY--AISPHNVALLVRENPGPDTAVTRDSLT 60
           M+GKLMPFYKQY G+KTK TGLVGYVFH++   ++S HN+ LLV+++PG DT  TRDSL+
Sbjct: 12  MRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLS 71

Query: 61  QFDNLYGIVADEGIDVKVANYISSTLARFKSLNELT-PIEILSPPLAHR 107
           QFD  YGI+ADEG+DVK ANYISSTLARFKSLNEL  PIE+ S PL H+
Sbjct: 72  QFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ 120

[Close]

BLAST of CmaCh11G015100 vs. TrEMBL
Match: A0A067LN74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGTKT-------KPT------GLVGYVFHQDYAISP--HNVALLVREN 60
           MKGKL+PFY+  K T T       KP+        VG+V HQDY I+P    V+ +V   
Sbjct: 11  MKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPPKQKVSFIV--- 70

Query: 61  PGPDTAVTRDS-LTQFDNLYGIVADEGIDVKVANYISSTLARFK 89
             P     RD  L+QFD LYG+  DEG+D+K A YISS   RFK
Sbjct: 71  --PTADSNRDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]

BLAST of CmaCh11G015100 vs. TrEMBL
Match: W9SYV9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010790 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 45/111 (40.54%), Postives = 55/111 (49.55%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGTKTKPTG-----------------------LVGYVFHQDYAISPHN 60
           MKGKL+PFY+  K + T  T                         VG+V HQDY + P  
Sbjct: 1   MKGKLIPFYRAAKPSSTSGTSHVQYTSSKAMKPISQSSAPSVPASVGFVVHQDY-VKP-K 60

Query: 61  VALLVRENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFK 89
           V+ ++ +N       TRD   QFDNLYGI  DEG+D K A YISS   RFK
Sbjct: 61  VSFVLPDN-------TRDLPVQFDNLYGISVDEGVDTKAATYISSVQERFK 102

[Close]

BLAST of CmaCh11G015100 vs. TrEMBL
Match: A0A0D2Q4X1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGT-------KTKP------TGLVGYVFHQDYAIS-PHNVALLVRENP 60
           +KGKL P Y+  K T       K KP      T  VG+  H+DY IS P  ++ +V  + 
Sbjct: 11  IKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPKKISFVVPADK 70

Query: 61  GPDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFKSLNEL 94
                  R++L Q DN +G+V DE +D+K A YISS   RFK   +L
Sbjct: 71  N------RENLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQL 111

[Close]

BLAST of CmaCh11G015100 vs. TrEMBL
Match: A0A0D2RZX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085600 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1


Query: 2   KGKLMPFYKQYKG-------TKTKP------TGLVGYVFHQDYAIS-PHNVALLVRENPG 61
           KGKL PFY+  KG       +K KP      +  + +  HQDY IS P  ++ +V   PG
Sbjct: 12  KGKLTPFYRAVKGVPTRQYSSKVKPNQGSSTSASISFRVHQDYMISQPKQISYIV---PG 71

Query: 62  PDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFK 89
                 R+ L+Q DN +G+  DE +D+K A YISS   RFK
Sbjct: 72  DKN---REKLSQIDNFFGVTGDESVDIKAATYISSVQERFK 106

[Close]

BLAST of CmaCh11G015100 vs. NCBI nr
Match: gi|700209701|gb|KGN64797.1| (hypothetical protein Csa_1G097750 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 76/109 (69.72%), Postives = 91/109 (83.49%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGTKTKPTGLVGYVFHQDY--AISPHNVALLVRENPGPDTAVTRDSLT 60
           M+GKLMPFYKQY G+KTK TGLVGYVFH++   ++S HN+ LLV+++PG DT  TRDSL+
Sbjct: 12  MRGKLMPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLS 71

Query: 61  QFDNLYGIVADEGIDVKVANYISSTLARFKSLNELT-PIEILSPPLAHR 107
           QFD  YGI+ADEG+DVK ANYISSTLARFKSLNEL  PIE+ S PL H+
Sbjct: 72  QFDRSYGIIADEGVDVKAANYISSTLARFKSLNELPHPIELSSIPLPHQ 120

[Close]

BLAST of CmaCh11G015100 vs. NCBI nr
Match: gi|802539270|ref|XP_012070196.1| (PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas])

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGTKT-------KPT------GLVGYVFHQDYAISP--HNVALLVREN 60
           MKGKL+PFY+  K T T       KP+        VG+V HQDY I+P    V+ +V   
Sbjct: 11  MKGKLIPFYRSSKATSTVQYSSKVKPSQSSPSAASVGFVVHQDYIITPPKQKVSFIV--- 70

Query: 61  PGPDTAVTRDS-LTQFDNLYGIVADEGIDVKVANYISSTLARFK 89
             P     RD  L+QFD LYG+  DEG+D+K A YISS   RFK
Sbjct: 71  --PTADSNRDKYLSQFDKLYGVAGDEGVDIKAATYISSVQERFK 109

[Close]

BLAST of CmaCh11G015100 vs. NCBI nr
Match: gi|703159978|ref|XP_010112385.1| (hypothetical protein L484_010790 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 45/111 (40.54%), Postives = 55/111 (49.55%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGTKTKPTG-----------------------LVGYVFHQDYAISPHN 60
           MKGKL+PFY+  K + T  T                         VG+V HQDY + P  
Sbjct: 1   MKGKLIPFYRAAKPSSTSGTSHVQYTSSKAMKPISQSSAPSVPASVGFVVHQDY-VKP-K 60

Query: 61  VALLVRENPGPDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFK 89
           V+ ++ +N       TRD   QFDNLYGI  DEG+D K A YISS   RFK
Sbjct: 61  VSFVLPDN-------TRDLPVQFDNLYGISVDEGVDTKAATYISSVQERFK 102

[Close]

BLAST of CmaCh11G015100 vs. NCBI nr
Match: gi|823127868|ref|XP_012440416.1| (PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii])

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 1   MKGKLMPFYKQYKGT-------KTKP------TGLVGYVFHQDYAIS-PHNVALLVRENP 60
           +KGKL P Y+  K T       K KP      T  VG+  H+DY IS P  ++ +V  + 
Sbjct: 11  IKGKLAPLYRAVKPTAAVQCTNKAKPNQGSSTTASVGFRVHRDYMISQPKKISFVVPADK 70

Query: 61  GPDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFKSLNEL 94
                  R++L Q DN +G+V DE +D+K A YISS   RFK   +L
Sbjct: 71  N------RENLNQIDNFFGVVGDESVDIKAATYISSVRERFKLEKQL 111

[Close]

BLAST of CmaCh11G015100 vs. NCBI nr
Match: gi|823251612|ref|XP_012458447.1| (PREDICTED: uncharacterized protein LOC105779215 [Gossypium raimondii])

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-08
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1


Query: 2   KGKLMPFYKQYKG-------TKTKP------TGLVGYVFHQDYAIS-PHNVALLVRENPG 61
           KGKL PFY+  KG       +K KP      +  + +  HQDY IS P  ++ +V   PG
Sbjct: 12  KGKLTPFYRAVKGVPTRQYSSKVKPNQGSSTSASISFRVHQDYMISQPKQISYIV---PG 71

Query: 62  PDTAVTRDSLTQFDNLYGIVADEGIDVKVANYISSTLARFK 89
                 R+ L+Q DN +G+  DE +D+K A YISS   RFK
Sbjct: 72  DKN---REKLSQIDNFFGVTGDESVDIKAATYISSVQERFK 106

The following BLAST results are available for this feature:

BLAST of CmaCh11G015100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G015100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE7_CUCSA	7.6e-35	69.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097750 PE=4 SV=1	[more]
A0A067LN74_JATCU	2.6e-11	45.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10105 PE=4 SV=1	[more]
W9SYV9_9ROSA	5.5e-09	40.54	Uncharacterized protein OS=Morus notabilis GN=L484_010790 PE=4 SV=1	[more]
A0A0D2Q4X1_GOSRA	2.7e-08	38.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272900 PE=4 SV=1	[more]
A0A0D2RZX2_GOSRA	3.6e-08	39.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085600 PE=4 SV=1	[more]

BLAST of CmaCh11G015100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G015100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209701\|gb\|KGN64797.1\|	1.1e-34	69.72	hypothetical protein Csa_1G097750 [Cucumis sativus]	[more]
gi\|802539270\|ref\|XP_012070196.1\|	3.8e-11	45.19	PREDICTED: uncharacterized protein LOC105632422 [Jatropha curcas]	[more]
gi\|703159978\|ref\|XP_010112385.1\|	7.9e-09	40.54	hypothetical protein L484_010790 [Morus notabilis]	[more]
gi\|823127868\|ref\|XP_012440416.1\|	3.9e-08	38.32	PREDICTED: uncharacterized protein LOC105765726 [Gossypium raimondii]	[more]
gi\|823251612\|ref\|XP_012458447.1\|	5.1e-08	39.60	PREDICTED: uncharacterized protein LOC105779215 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G015100.1	CmaCh11G015100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G015100	Cucsa.054080	Cucumber (Gy14) v1	cgycmaB0065
CmaCh11G015100	Cla004079	Watermelon (97103) v1	cmawmB107
CmaCh11G015100	MELO3C014892	Melon (DHL92) v3.5.1	cmameB137
CmaCh11G015100	ClCG05G013580	Watermelon (Charleston Gray)	cmawcgB120
CmaCh11G015100	CSPI03G25480	Wild cucumber (PI 183967)	cmacpiB128
CmaCh11G015100	CmoCh11G016110	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G015100	Lsi07G014800	Bottle gourd (USVL1VR-Ls)	cmalsiB149
CmaCh11G015100	Cp4.1LG04g06000	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G015100	MELO3C014892.2	Melon (DHL92) v3.6.1	cmamedB149
CmaCh11G015100	CsaV3_3G026960	Cucumber (Chinese Long) v3	cmacucB0148
CmaCh11G015100	Cla97C05G095110	Watermelon (97103) v2	cmawmbB123
CmaCh11G015100	Bhi01G001615	Wax gourd	cmawgoB0108
CmaCh11G015100	CsGy3G023910	Cucumber (Gy14) v2	cgybcmaB298
CmaCh11G015100	Carg15557	Silver-seed gourd	carcmaB0520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G015100	Melon (DHL92) v3.6.1	cmamedB119
CmaCh11G015100	Silver-seed gourd	carcmaB0513
CmaCh11G015100	Silver-seed gourd	carcmaB0605
CmaCh11G015100	Cucumber (Chinese Long) v3	cmacucB0117
CmaCh11G015100	Watermelon (97103) v2	cmawmbB135
CmaCh11G015100	Cucurbita maxima (Rimu)	cmacmaB121
CmaCh11G015100	Cucurbita maxima (Rimu)	cmacmaB131
CmaCh11G015100	Cucurbita moschata (Rifu)	cmacmoB111
CmaCh11G015100	Cucurbita moschata (Rifu)	cmacmoB120
CmaCh11G015100	Cucurbita moschata (Rifu)	cmacmoB129
CmaCh11G015100	Cucumber (Chinese Long) v2	cmacuB131
CmaCh11G015100	Cucurbita pepo (Zucchini)	cmacpeB130
CmaCh11G015100	Cucurbita pepo (Zucchini)	cmacpeB145
CmaCh11G015100	Cucurbita pepo (Zucchini)	cmacpeB152
CmaCh11G015100	Bottle gourd (USVL1VR-Ls)	cmalsiB135
CmaCh11G015100	Cucumber (Gy14) v2	cgybcmaB045