CmoCh06G005780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G005780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal L21-1-like protein
Location	Cmo_Chr06 : 2839572 .. 2840853 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAACGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTTCGTTCGATTTCCGATTCCTTTCATTTTTCGATTAATTCTGTTTTCGTTTTTTTTATTATATCTGTTTTTGTTTTGGAAATGTTTAAAATTTTAGTGTTTTAGGTCTCGGATTGTGTTTGATTTGTGTAGTAACTTGTTTAGGTTTAGGCTGGATAAGTTGTGGACTCTGTTCTGTTTATATTTCGCTGGTTCTTATTGATTTGATCTTTTAGGATGTGGAATATGTATCCGTTAATTTTTATAGCAAATCACTTGGTGAATGTTTTTATAGTTGCGCGGTTTCAGATTGTCGAATGCTAACTATGTTTGTTTGGCGTTGCTTGAAATTCACATTATATTTTAGTTGTCACATATGTTTGAAGCAAGTTTTGTATGAATCTCTGCCAAGTGTTGTTTTCATGAATCGATTTGGATGTAGGACAGCTAAATCATGCTGTAACTCAAATTTCTTGAGTTTGATTCGAGAAATAAACATTCACTTTTGTGCTGATTCTACTGAATGAAATTTGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTG

mRNA sequence

TGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAACGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTG

Coding sequence (CDS)

ATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAG

Homology

[Close]

BLAST of CmoCh06G005780 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-81
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.7e-43
Identity = 90/158 (56.96%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N A+HKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F+ R  +ND++K DA 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of CmoCh06G005780 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-42
Identity = 83/157 (52.87%), Postives = 114/157 (72.61%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF+ R   N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CmoCh06G005780 vs. Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-42
Identity = 85/159 (53.46%), Postives = 108/159 (67.92%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRT+++GDYVDIK  G +HKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS      + R  +N +   +AK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of CmoCh06G005780 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.5e-87
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 150/164 (91.46%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 150/164 (91.46%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TrEMBL
Match: J3N389_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGD+VD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TrEMBL
Match: A0A0D2NQZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 9.3e-85
Identity = 151/164 (92.07%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCAEEF LRKVKNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCAEEFKLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGP+PGFMV+GA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPRPGFMVDGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.9 bits (777), Expect = 6.0e-83
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.9 bits (777), Expect = 6.0e-83
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.1 bits (775), Expect = 1.0e-82
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.1 bits (775), Expect = 1.0e-82
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 2.9e-87
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.4e-87
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. NCBI nr
Match: gi|573959296|ref|XP_006661841.1| (PREDICTED: 60S ribosomal protein L21-2 [Oryza brachyantha])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGD+VD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 150/164 (91.46%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. NCBI nr
Match: gi|823174045|ref|XP_012485652.1| (PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-84
Identity = 149/164 (90.85%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWN+TKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of CmoCh06G005780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL212_ARATH	1.1e-81	85.37	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]
RL211_ARATH	1.8e-81	85.37	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL21_CYAPA	9.7e-43	56.96	60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1	[more]
RL21A_YEAST	3.7e-42	52.87	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
RL21_DICDI	8.2e-42	53.46	60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1	[more]

BLAST of CmoCh06G005780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	4.5e-87	95.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	7.1e-85	91.46	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0B0MJE8_GOSAR	7.1e-85	91.46	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
J3N389_ORYBR	7.1e-85	92.68	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
A0A0D2NQZ1_GOSRA	9.3e-85	92.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1	[more]

BLAST of CmoCh06G005780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G57660.1	6.0e-83	85.37	Translation protein SH3-like family protein	[more]
AT1G57860.1	6.0e-83	85.37	Translation protein SH3-like family protein	[more]
AT1G09590.1	1.0e-82	85.37	Translation protein SH3-like family protein	[more]
AT1G09690.1	1.0e-82	85.37	Translation protein SH3-like family protein	[more]

BLAST of CmoCh06G005780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084684\|ref\|XP_008443016.1\|	2.9e-87	96.34	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|778684693\|ref\|XP_004140433.2\|	6.4e-87	95.73	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|573959296\|ref\|XP_006661841.1\|	1.0e-84	92.68	PREDICTED: 60S ribosomal protein L21-2 [Oryza brachyantha]	[more]
gi\|414447252\|gb\|AFW99820.1\|	1.0e-84	91.46	60S ribosomal protein L21 [Gossypium hirsutum]	[more]
gi\|823174045\|ref\|XP_012485652.1\|	1.3e-84	90.85	PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001147	Ribosomal_L21e
IPR008991	Translation_prot_SH3-like_sf
IPR018259	Ribosomal_L21e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005780.1	CmoCh06G005780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	G3DSA:2.30.30.70		coord: 1..99 score: 6.9
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 2..158 score: 1.4E
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 5..99 score: 1.3
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..99 score: 4.21
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G005780	Cucsa.242460	Cucumber (Gy14) v1	cgycmoB0681
CmoCh06G005780	CmaCh14G003980	Cucurbita maxima (Rimu)	cmacmoB268
CmoCh06G005780	CmaCh06G005720	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G005780	Cla017565	Watermelon (97103) v1	cmowmB782
CmoCh06G005780	Csa3G797610	Cucumber (Chinese Long) v2	cmocuB808
CmoCh06G005780	MELO3C009600	Melon (DHL92) v3.5.1	cmomeB747
CmoCh06G005780	ClCG10G017740	Watermelon (Charleston Gray)	cmowcgB729
CmoCh06G005780	CSPI03G36200	Wild cucumber (PI 183967)	cmocpiB816
CmoCh06G005780	Lsi03G017590	Bottle gourd (USVL1VR-Ls)	cmolsiB747
CmoCh06G005780	Cp4.1LG03g00070	Cucurbita pepo (Zucchini)	cmocpeB783
CmoCh06G005780	Cp4.1LG08g09260	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G005780	MELO3C009600.2	Melon (DHL92) v3.6.1	cmomedB849
CmoCh06G005780	CsaV3_7G005620	Cucumber (Chinese Long) v3	cmocucB0987
CmoCh06G005780	CsaV3_3G038560	Cucumber (Chinese Long) v3	cmocucB0954
CmoCh06G005780	Cla97C10G200660	Watermelon (97103) v2	cmowmbB818
CmoCh06G005780	Bhi11G002091	Wax gourd	cmowgoB0974
CmoCh06G005780	CsGy3G033640	Cucumber (Gy14) v2	cgybcmoB402

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G005780	CmoCh14G004000	Cucurbita moschata (Rifu)	cmocmoB222

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G005780	Silver-seed gourd	carcmoB0933