CmoCh06G005780.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G005780.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal L21-1-like protein
Location	Cmo_Chr06 : 2839572 .. 2840853 (+)
Sequence length	767

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAACGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTTCGTTCGATTTCCGATTCCTTTCATTTTTCGATTAATTCTGTTTTCGTTTTTTTTATTATATCTGTTTTTGTTTTGGAAATGTTTAAAATTTTAGTGTTTTAGGTCTCGGATTGTGTTTGATTTGTGTAGTAACTTGTTTAGGTTTAGGCTGGATAAGTTGTGGACTCTGTTCTGTTTATATTTCGCTGGTTCTTATTGATTTGATCTTTTAGGATGTGGAATATGTATCCGTTAATTTTTATAGCAAATCACTTGGTGAATGTTTTTATAGTTGCGCGGTTTCAGATTGTCGAATGCTAACTATGTTTGTTTGGCGTTGCTTGAAATTCACATTATATTTTAGTTGTCACATATGTTTGAAGCAAGTTTTGTATGAATCTCTGCCAAGTGTTGTTTTCATGAATCGATTTGGATGTAGGACAGCTAAATCATGCTGTAACTCAAATTTCTTGAGTTTGATTCGAGAAATAAACATTCACTTTTGTGCTGATTCTACTGAATGAAATTTGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTG

mRNA sequence

TGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAACGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTG

Coding sequence (CDS)

ATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAG

Homology

[Close]

BLAST of CmoCh06G005780.1 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-81
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.7e-43
Identity = 90/158 (56.96%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N A+HKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F+ R  +ND++K DA 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of CmoCh06G005780.1 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-42
Identity = 83/157 (52.87%), Postives = 114/157 (72.61%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF+ R   N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CmoCh06G005780.1 vs. Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-42
Identity = 85/159 (53.46%), Postives = 108/159 (67.92%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRT+++GDYVDIK  G +HKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS      + R  +N +   +AK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of CmoCh06G005780.1 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.5e-87
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 150/164 (91.46%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 150/164 (91.46%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TrEMBL
Match: J3N389_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGD+VD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TrEMBL
Match: A0A0D2NQZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 9.3e-85
Identity = 151/164 (92.07%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCAEEF LRKVKNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCAEEFKLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGP+PGFMV+GA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPRPGFMVDGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.9 bits (777), Expect = 6.0e-83
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.9 bits (777), Expect = 6.0e-83
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.1 bits (775), Expect = 1.0e-82
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 303.1 bits (775), Expect = 1.0e-82
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 2.9e-87
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.4e-87
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. NCBI nr
Match: gi|573959296|ref|XP_006661841.1| (PREDICTED: 60S ribosomal protein L21-2 [Oryza brachyantha])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGD+VD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 150/164 (91.46%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780.1 vs. NCBI nr
Match: gi|823174045|ref|XP_012485652.1| (PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-84
Identity = 149/164 (90.85%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWN+TKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRK+KNDQLKA+AK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of CmoCh06G005780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL212_ARATH	1.1e-81	85.37	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]
RL211_ARATH	1.8e-81	85.37	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL21_CYAPA	9.7e-43	56.96	60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1	[more]
RL21A_YEAST	3.7e-42	52.87	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
RL21_DICDI	8.2e-42	53.46	60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1	[more]

BLAST of CmoCh06G005780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	4.5e-87	95.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	7.1e-85	91.46	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0B0MJE8_GOSAR	7.1e-85	91.46	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
J3N389_ORYBR	7.1e-85	92.68	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
A0A0D2NQZ1_GOSRA	9.3e-85	92.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1	[more]

BLAST of CmoCh06G005780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G57660.1	6.0e-83	85.37	Translation protein SH3-like family protein	[more]
AT1G57860.1	6.0e-83	85.37	Translation protein SH3-like family protein	[more]
AT1G09590.1	1.0e-82	85.37	Translation protein SH3-like family protein	[more]
AT1G09690.1	1.0e-82	85.37	Translation protein SH3-like family protein	[more]

BLAST of CmoCh06G005780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084684\|ref\|XP_008443016.1\|	2.9e-87	96.34	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|778684693\|ref\|XP_004140433.2\|	6.4e-87	95.73	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|573959296\|ref\|XP_006661841.1\|	1.0e-84	92.68	PREDICTED: 60S ribosomal protein L21-2 [Oryza brachyantha]	[more]
gi\|414447252\|gb\|AFW99820.1\|	1.0e-84	91.46	60S ribosomal protein L21 [Gossypium hirsutum]	[more]
gi\|823174045\|ref\|XP_012485652.1\|	1.3e-84	90.85	PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001147	Ribosomal_L21e
IPR008991	Translation_prot_SH3-like_sf
IPR018259	Ribosomal_L21e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G005780	CmoCh06G005780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005780.1	CmoCh06G005780.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005780.1.exon.2	CmoCh06G005780.1.exon.2	exon
CmoCh06G005780.1.exon.1	CmoCh06G005780.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005780.1.five_prime_UTR.1	CmoCh06G005780.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005780.1.CDS.1	CmoCh06G005780.1.CDS.1	CDS
CmoCh06G005780.1.CDS.2	CmoCh06G005780.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G005780.1.three_prime_UTR.1	CmoCh06G005780.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	G3DSA:2.30.30.70		coord: 1..99 score: 6.9
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 2..158 score: 1.4E
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 5..99 score: 1.3
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..99 score: 4.21
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62 scor