CsaV3_7G005620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G005620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L21
Locationchr7 : 3345948 .. 3347035 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAATTTATCCGGCCCATTAAAGAAGCCAATAAAAAACCTAGCCCTCGCAATTAGGGTTTCTTCATTTTGTGAGAGAGTGTGAGAGAAAGTTCCTGCTCCAATCATGCCGGCCGGCCATGGACTTCGATCACGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTACCATGGTCGCACAGGTCAGGTATGGAATGTCACAAAGCGCGCCATCGGTGTCGAGATCAACAAACAGGTTCGGGATTCTTTTTTAAAATCTGTTATAGTTTTTAGAATGTATATGAATCTGGTGATTTAGGGTAATAGATTGTGTTTGGTTTTGATAGAATCTTAATTAGTTTTCGGACTCTGTTTTTCTTATTAAACTTGTGAATCTTAATGTATGTTCTAGTTTGATGGGTTCTGGAATCTGCTTTTTTTTTTTTTTAGTATTAAACTTGTGATTTTGGGAATGAATTTTTTGTAGGTCGGGAACAGAATTATTAAGAAAAGAATTCATGTGAGAGTGGAGCACGTGCAGCCTTCTCGATGCACGGAGGAATTTCGCTTGAGGAAGGTGAAGAATGATGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCGCAGTCATCTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTCTGATGGAGACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAAGGTGGCTATTAGAATTTTCATCTCTTTGAACTTTTGCCTTGTTTTGTGAGTCTTATTTTTGTTTGATCTTTGCAACTGCTCTAATGGTACAATTTTCTCAGATTATGCTTCTAAATTTTGGAAACAGAACTTATAGAATTGAATTGTTTCTTAGTTTCTAGTTTTCGTCACCCTGTAGTTTTAGTTTATTCAAAGATGTTCTTGTTTCGATTATTTCCATTGAACCCATATTTCTTAAACTAACTAATCTTTCTATTCTTAATCACCA

mRNA sequence

ATGCCGGCCGGCCATGGACTTCGATCACGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTACCATGGTCGCACAGGTCAGGTATGGAATGTCACAAAGCGCGCCATCGGTGTCGAGATCAACAAACAGGTCGGGAACAGAATTATTAAGAAAAGAATTCATGTGAGAGTGGAGCACGTGCAGCCTTCTCGATGCACGGAGGAATTTCGCTTGAGGAAGGTGAAGAATGATGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCGCAGTCATCTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTCTGATGGAGACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAAGGTGGCTATTAG

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTCGATCACGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTACCATGGTCGCACAGGTCAGGTATGGAATGTCACAAAGCGCGCCATCGGTGTCGAGATCAACAAACAGGTCGGGAACAGAATTATTAAGAAAAGAATTCATGTGAGAGTGGAGCACGTGCAGCCTTCTCGATGCACGGAGGAATTTCGCTTGAGGAAGGTGAAGAATGATGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCGCAGTCATCTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTCTGATGGAGACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAAGGTGGCTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Homology
[Close]
BLAST of CsaV3_7G005620 vs. NCBI nr
Match: XP_004140433.2 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus] >KGN59272.1 hypothetical protein Csa_3G797610 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 1.6e-89
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 4.6e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 332.0 bits (850), Expect = 1.1e-87
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 4.3e-87
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. NCBI nr
Match: XP_022947529.1 (60S ribosomal protein L21-2-like [Cucurbita moschata] >XP_023005832.1 60S ribosomal protein L21-2-like [Cucurbita maxima] >XP_023540746.1 60S ribosomal protein L21-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.6 bits (841), Expect = 1.3e-86
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TAIR10
Match: AT1G09590.1 (Translation protein SH3-like family protein)

HSP 1 Score: 300.4 bits (768), Expect = 6.6e-82
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TAIR10
Match: AT1G09690.1 (Translation protein SH3-like family protein)

HSP 1 Score: 300.4 bits (768), Expect = 6.6e-82
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TAIR10
Match: AT1G57660.1 (Translation protein SH3-like family protein)

HSP 1 Score: 298.1 bits (762), Expect = 3.3e-81
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TAIR10
Match: AT1G57860.1 (Translation protein SH3-like family protein)

HSP 1 Score: 298.1 bits (762), Expect = 3.3e-81
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. Swiss-Prot
Match: sp|Q43291|RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-80
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. Swiss-Prot
Match: sp|Q9FDZ9|RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 5.9e-80
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. Swiss-Prot
Match: sp|Q02753|RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-42
Identity = 83/157 (52.87%), Postives = 113/157 (71.97%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]
BLAST of CsaV3_7G005620 vs. Swiss-Prot
Match: sp|Q12672|RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.4e-42
Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + ++TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]
BLAST of CsaV3_7G005620 vs. Swiss-Prot
Match: sp|O82574|RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.4e-42
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGAVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]
BLAST of CsaV3_7G005620 vs. TrEMBL
Match: tr|A0A0A0LEZ0|A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.0e-89
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TrEMBL
Match: tr|A0A1S3B7V0|A0A1S3B7V0_CUCME (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 3.0e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TrEMBL
Match: tr|A0A0U1WT33|A0A0U1WT33_GOSHI (60S ribosomal protein L21-1-like OS=Gossypium hirsutum OX=3635 GN=LOC107889489 PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TrEMBL
Match: tr|A0A0B0MJE8|A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum OX=29729 GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of CsaV3_7G005620 vs. TrEMBL
Match: tr|A0A2P5WQJ8|A0A2P5WQJ8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA27356 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:
BLAST of CsaV3_7G005620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140433.21.6e-8999.39PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus] >KGN59272.1 hypothetica... [more]
XP_008443016.14.6e-8998.78PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo][more]
XP_022934303.11.1e-8796.3460S ribosomal protein L21-1-like [Cucurbita moschata][more]
XP_022934302.14.3e-8795.7360S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal p... [more]
XP_022947529.11.3e-8695.7360S ribosomal protein L21-2-like [Cucurbita moschata] >XP_023005832.1 60S riboso... [more]
BLAST of CsaV3_7G005620 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09590.16.6e-8283.54Translation protein SH3-like family protein[more]
AT1G09690.16.6e-8283.54Translation protein SH3-like family protein[more]
AT1G57660.13.3e-8182.32Translation protein SH3-like family protein[more]
AT1G57860.13.3e-8182.32Translation protein SH3-like family protein[more]
BLAST of CsaV3_7G005620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q43291|RL211_ARATH1.2e-8083.5460S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2[more]
sp|Q9FDZ9|RL212_ARATH5.9e-8082.3260S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1[more]
sp|Q02753|RL21A_YEAST3.8e-4252.8760S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
sp|Q12672|RL21B_YEAST8.4e-4252.2360S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
sp|O82574|RL21_CYAPA8.4e-4256.9660S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1[more]
BLAST of CsaV3_7G005620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEZ0|A0A0A0LEZ0_CUCSA1.0e-8999.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=4 SV=1[more]
tr|A0A1S3B7V0|A0A1S3B7V0_CUCME3.0e-8998.7860S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=4 SV=1[more]
tr|A0A0U1WT33|A0A0U1WT33_GOSHI1.3e-8491.4660S ribosomal protein L21-1-like OS=Gossypium hirsutum OX=3635 GN=LOC107889489 P... [more]
tr|A0A0B0MJE8|A0A0B0MJE8_GOSAR1.3e-8491.4660S ribosomal L21-1-like protein OS=Gossypium arboreum OX=29729 GN=F383_17279 PE... [more]
tr|A0A2P5WQJ8|A0A2P5WQJ8_GOSBA1.3e-8491.46Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA27356 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR018259Ribosomal_L21e_CS
IPR036948Ribosomal_L21_sf
IPR001147Ribosomal_L21e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G005620.1CsaV3_7G005620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001147Ribosomal protein L21ePFAMPF01157Ribosomal_L21ecoord: 5..99
e-value: 1.9E-44
score: 149.4
IPR001147Ribosomal protein L21ePANTHERPTHR2098160S RIBOSOMAL PROTEIN L21coord: 1..161
IPR036948Ribosomal protein L21 superfamilyGENE3DG3DSA:2.30.30.70coord: 1..97
e-value: 3.7E-48
score: 163.5
NoneNo IPR availablePANTHERPTHR20981:SF16SUBFAMILY NOT NAMEDcoord: 1..161
IPR018259Ribosomal protein L21e, conserved sitePROSITEPS01171RIBOSOMAL_L21Ecoord: 37..62
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 3..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G005620CSPI03G36200Wild cucumber (PI 183967)cpicucB194
CsaV3_7G005620Cucsa.242460Cucumber (Gy14) v1cgycucB368
CsaV3_7G005620CmaCh14G003980Cucurbita maxima (Rimu)cmacucB0319
CsaV3_7G005620CmaCh06G005720Cucurbita maxima (Rimu)cmacucB1002
CsaV3_7G005620CmoCh14G004000Cucurbita moschata (Rifu)cmocucB0314
CsaV3_7G005620CmoCh06G005780Cucurbita moschata (Rifu)cmocucB0987
CsaV3_7G005620Cp4.1LG08g09260Cucurbita pepo (Zucchini)cpecucB1082
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_7G005620CsaV3_3G038560Cucumber (Chinese Long) v3cuccucB157
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G005620Silver-seed gourdcarcucB0758
CsaV3_7G005620Silver-seed gourdcarcucB0915
CsaV3_7G005620Cucumber (Gy14) v2cgybcucB348
CsaV3_7G005620Cucumber (Gy14) v1cgycucB226
CsaV3_7G005620Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G005620Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G005620Cucurbita maxima (Rimu)cmacucB0686
CsaV3_7G005620Cucurbita maxima (Rimu)cmacucB0768
CsaV3_7G005620Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G005620Cucurbita moschata (Rifu)cmocucB0259
CsaV3_7G005620Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G005620Cucurbita moschata (Rifu)cmocucB0754
CsaV3_7G005620Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G005620Cucurbita pepo (Zucchini)cpecucB0656
CsaV3_7G005620Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G005620Cucurbita pepo (Zucchini)cpecucB0946
CsaV3_7G005620Wild cucumber (PI 183967)cpicucB415
CsaV3_7G005620Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G005620Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G005620Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G005620Watermelon (Charleston Gray)cucwcgB564
CsaV3_7G005620Watermelon (Charleston Gray)cucwcgB597
CsaV3_7G005620Watermelon (97103) v1cucwmB614
CsaV3_7G005620Watermelon (97103) v1cucwmB627
CsaV3_7G005620Watermelon (97103) v2cucwmbB542
CsaV3_7G005620Watermelon (97103) v2cucwmbB574
CsaV3_7G005620Wax gourdcucwgoB687
CsaV3_7G005620Wax gourdcucwgoB707