CmoCh14G004000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G004000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal L21-1-like protein
Location	Cmo_Chr14 : 1885820 .. 1887572 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTCAGATTGTGAGTGTAAGAGTGTTTCATCTTGTATGCTTTAGAAGATGCCGGCCGGCCATGGACTTCGATCCCGTACTAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACATATTTGAGGACCTTCAAGATCGGTGACTATGTCGACGTTAAAGTGAACGGTGCTGTCCACAAAGGAATGCCGCATAAATTCTACCATGGCCGCACCGGTCGTGTATGGAACGTTACCAAGCGTGCTATTGGTGTTGAGATCAACAAGCAGGTCGATTTCTGTTTCCGTTTTCCTTCGTGTTTGTATTGTTTCTGTTGTCGGTTCTTTTATTAGATCTGTTCTGGTTTTCATTCTGCTATGTCTTTTTAGAATATTTATGGATTTGGCGATTGAGGTAATTGATTATTATGGAAACTTGTTTAGTTTTAGGCTGTAAAAGTTATGTACTCATTTCTGTGTATTAAATTTCTGCTTGCTGTTGATTTGTTCAGAGGATTTTGAATATGTATCTGTTAATTCGTTAAGCAACTCATTCGGTGGTTGTTTCTAAAATTGCTTGGCTTTTGATAGTCGAATACTACGGCTTTGCATAGAGTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTGCTGATTGATGTTGCTGGTATTTGAATTCATATTAGACTTGTTTGTAAATAATCGGTCATCTCAAGCATTTGAAGAGTCGAATGTTTTGAGCTATATCTGCCTTAGGGTGGTGTTTATAAATCGATTTAGTTTTTGGCTGTAAAGGGTTATCATTACAAGGTATTTTGATGATTTTCCAGTCATTTGAACACAATTGTAACTCTGTTATTTGATTATGTTTCAATCAATCAATATAAACCCACTTACAGGGTCTTCTAATGTTCTATATTAAAATTTTCAGGTGGGCAACAGAATCATAAGGAAAAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGTGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAACTGAAGGCCGAAGCTAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTTACACCCATTCCATACGATGTGGTTAACGATCTCAAGGGTGGCTATTAGTATTTCCTTTTCTTGGATATTGTTGCAATTTACTCCTTGTGCCCCTAAATTTTTTTGGATGCTAAACTTTTCTATCGAAAATTTTCAGCCCTAAGCTTTTGAGTAAACTAATGTAGTTTCAGCTCACTTAAAGTAATTTTGTTGCTCTATGTTTTTTCTGATTCTTTTGTTTTGTTTGCCCATGAATCTTCCTTTCAGATGGTAGTAGCTGCTTCATTTGATGTTCATTATTTAGTTTTCCTTATTACTATTTAAATTTCTATG

mRNA sequence

CTCTTCAGATTGTGAGTGTAAGAGTGTTTCATCTTGTATGCTTTAGAAGATGCCGGCCGGCCATGGACTTCGATCCCGTACTAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACATATTTGAGGACCTTCAAGATCGGTGACTATGTCGACGTTAAAGTGAACGGTGCTGTCCACAAAGGAATGCCGCATAAATTCTACCATGGCCGCACCGGTCGTGTATGGAACGTTACCAAGCGTGCTATTGGTGTTGAGATCAACAAGCAGGTGGGCAACAGAATCATAAGGAAAAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGTGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAACTGAAGGCCGAAGCTAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTTACACCCATTCCATACGATGTGGTTAACGATCTCAAGGGTGGCTATTAGTATTTCCTTTTCTTGGATATTGTTGCAATTTACTCCTTGTGCCCCTAAATTTTTTTGGATGCTAAACTTTTCTATCGAAAATTTTCAGCCCTAAGCTTTTGAGTAAACTAATGTAGTTTCAGCTCACTTAAAGTAATTTTGTTGCTCTATGTTTTTTCTGATTCTTTTGTTTTGTTTGCCCATGAATCTTCCTTTCAGATGGTAGTAGCTGCTTCATTTGATGTTCATTATTTAGTTTTCCTTATTACTATTTAAATTTCTATG

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTCGATCCCGTACTAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACATATTTGAGGACCTTCAAGATCGGTGACTATGTCGACGTTAAAGTGAACGGTGCTGTCCACAAAGGAATGCCGCATAAATTCTACCATGGCCGCACCGGTCGTGTATGGAACGTTACCAAGCGTGCTATTGGTGTTGAGATCAACAAGCAGGTGGGCAACAGAATCATAAGGAAAAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGTGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAACTGAAGGCCGAAGCTAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTTACACCCATTCCATACGATGTGGTTAACGATCTCAAGGGTGGCTATTAG

Homology

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BLAST of CmoCh14G004000 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-82
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.7e-82
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-42
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRTF++GDYVD+K  G VHKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R  +N +   EAK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of CmoCh14G004000 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 91/158 (57.59%), Postives = 114/158 (72.15%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  FKIG+YVDV  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TG VWNVTKRAIGVEINK+V +RII+KRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of CmoCh14G004000 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.9e-41
Identity = 81/157 (51.59%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ +K+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TG V+NVTK ++GV INK VGNR + KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CmoCh14G004000 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.4e-87
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.9e-85
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.9e-85
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TrEMBL
Match: A0A0D2NQZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRCAEEF+LRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCAEEFKLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGP+PGFMV+GA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPRPGFMVDGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TrEMBL
Match: J3LJV3_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRC EE RLRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-83
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-83
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 305.1 bits (780), Expect = 2.7e-83
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 305.1 bits (780), Expect = 2.7e-83
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 4.9e-87
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 323.2 bits (827), Expect = 2.7e-85
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. NCBI nr
Match: gi|823136611|ref|XP_012468071.1| (PREDICTED: 60S ribosomal protein L21-1 [Gossypium raimondii])

HSP 1 Score: 322.8 bits (826), Expect = 3.5e-85
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRCAEEF+LRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCAEEFKLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVI TKRQPEGP+PGFMV+GA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPRPGFMVDGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh14G004000 vs. NCBI nr
Match: gi|573923618|ref|XP_006649384.1| (PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha])

HSP 1 Score: 322.8 bits (826), Expect = 3.5e-85
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRC EE RLRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of CmoCh14G004000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL211_ARATH	2.1e-82	86.59	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL212_ARATH	4.7e-82	85.98	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]
RL21_DICDI	8.2e-42	54.72	60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1	[more]
RL21_CYAPA	1.1e-41	57.59	60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1	[more]
RL21A_YEAST	6.9e-41	51.59	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of CmoCh14G004000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	3.4e-87	95.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
A0A0B0MJE8_GOSAR	1.9e-85	93.29	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	1.9e-85	93.29	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0D2NQZ1_GOSRA	2.4e-85	93.90	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1	[more]
J3LJV3_ORYBR	2.4e-85	94.51	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]

BLAST of CmoCh14G004000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09590.1	1.2e-83	86.59	Translation protein SH3-like family protein	[more]
AT1G09690.1	1.2e-83	86.59	Translation protein SH3-like family protein	[more]
AT1G57660.1	2.7e-83	85.98	Translation protein SH3-like family protein	[more]
AT1G57860.1	2.7e-83	85.98	Translation protein SH3-like family protein	[more]

BLAST of CmoCh14G004000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084684\|ref\|XP_008443016.1\|	2.2e-87	96.34	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|778684693\|ref\|XP_004140433.2\|	4.9e-87	95.73	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|414447252\|gb\|AFW99820.1\|	2.7e-85	93.29	60S ribosomal protein L21 [Gossypium hirsutum]	[more]
gi\|823136611\|ref\|XP_012468071.1\|	3.5e-85	93.90	PREDICTED: 60S ribosomal protein L21-1 [Gossypium raimondii]	[more]
gi\|573923618\|ref\|XP_006649384.1\|	3.5e-85	94.51	PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001147	Ribosomal_L21e
IPR008991	Translation_prot_SH3-like_sf
IPR018259	Ribosomal_L21e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004000.1	CmoCh14G004000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	G3DSA:2.30.30.70		coord: 1..99 score: 2.0
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 2..158 score: 9.7E
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 5..99 score: 4.9
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..99 score: 7.82
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G004000	Cucsa.242460	Cucumber (Gy14) v1	cgycmoB0675
CmoCh14G004000	CmaCh14G003980	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G004000	CmaCh06G005720	Cucurbita maxima (Rimu)	cmacmoB792
CmoCh14G004000	Cla017565	Watermelon (97103) v1	cmowmB214
CmoCh14G004000	Csa3G797610	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G004000	MELO3C009600	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G004000	ClCG10G017740	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G004000	CSPI03G36200	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G004000	Lsi03G017590	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G004000	Cp4.1LG03g00070	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G004000	Cp4.1LG08g09260	Cucurbita pepo (Zucchini)	cmocpeB259
CmoCh14G004000	MELO3C009600.2	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G004000	CsaV3_7G005620	Cucumber (Chinese Long) v3	cmocucB0314
CmoCh14G004000	CsaV3_3G038560	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G004000	Cla97C10G200660	Watermelon (97103) v2	cmowmbB230
CmoCh14G004000	Bhi11G002091	Wax gourd	cmowgoB0283
CmoCh14G004000	CsGy3G033640	Cucumber (Gy14) v2	cgybcmoB279

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G004000	CmoCh06G005780	Cucurbita moschata (Rifu)	cmocmoB222

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G004000	Silver-seed gourd	carcmoB0347