MELO3C009600 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009600
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	60S ribosomal L21-1-like protein
Location	chr4 : 29690248 .. 29691636 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTAATTTGGCCGGCCCATTAAAGGAAGCAATACTCAAAAACCCTAGTGTTGTCACTATATAAATCCCCAATACCTAGGGTTTCTTCCATTTTGTGAGAGAGTGTGAGAGAGTGTGAGTTAGAAAGCTTCATCCTGCTCCAATCATGCCGGCCGGCCATGGACTTCGATCTCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTATATTGCTTTGACTACCTACTTGAGGACATACAAAATTGGCGATTATGTCGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTACCATGGTCGCACAGGTCGCGTATGGAATGTTACAAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTTCGTTGCCTTTTTTTGCTGATTCTTTTGTAAGATCTGTTCTGTTTTTTAGAATGTATGTCAATATGGTGATTTAGGGTAATAGGTTGCGTTTGGTTTTTGTAGAATCTTAATTAGTTTGGACTCGGTTTTTCTTATTAAACCCTCTGGTTGCTGTTAGTTAGATGGGTATTCGTTCATTTGTGTAGCAACTCGTTCGATGCTTGTTTCTGAAATTCTGTAGCTGTTAATAGATGAATGTTAAGGCTTTATATAAAAATATGGTATTTTTTGCTGATTGATCTTACTTGAGGTTGATAGCATGGTATACATGTTTGTAAATAATAAGGGTGTTTCATGTGTTTGGGGGAGAAATTTTTTTGAGTGGTTTCTACTTAACGATGGTGTTCATCAAATGATTTGGTTGTGTTCGACTGCAAAGTTTAGGATTATATATATGTTCACTTTTATGATTATCCAGGTAGCTGAATAATGTTGTGATCCAATCAAATTAGACTCACTTCTGATGTTCTTCAATGGATTTTGCAGGTGGGGAACAGAATTATTAAGAAGAGAATTCATGTCCGAGTCGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTCCGTTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCCGAAGCCAAGGCCAAAGGTGTAGTCATTTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGCGGCTATTAGAATTTTCTCCTCTTTGAACTTTTGCCTTGTTTCGTCAGTCTTATTTTTGTTTGATCTTTGAACTGCTTGAATAGTACAATTTTCTCATTATGCTTCTAAATTTTGGATACCAAACTTATGGAATTGAATTGTTTCTTAGTTTCTGGTTTTGGCCATTAGCATAAAACAGTGTAGTTTTAGCTTATTCAAAGTAAATTTTGTTGCGTGATGTTCTTGATCCC

mRNA sequence

CTTTAATTTGGCCGGCCCATTAAAGGAAGCAATACTCAAAAACCCTAGTGTTGTCACTATATAAATCCCCAATACCTAGGGTTTCTTCCATTTTGTGAGAGAGTGTGAGAGAGTGTGAGTTAGAAAGCTTCATCCTGCTCCAATCATGCCGGCCGGCCATGGACTTCGATCTCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTATATTGCTTTGACTACCTACTTGAGGACATACAAAATTGGCGATTATGTCGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTACCATGGTCGCACAGGTCGCGTATGGAATGTTACAAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTGGGGAACAGAATTATTAAGAAGAGAATTCATGTCCGAGTCGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTCCGTTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCCGAAGCCAAGGCCAAAGGTGTAGTCATTTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGCGGCTATTAGAATTTTCTCCTCTTTGAACTTTTGCCTTGTTTCGTCAGTCTTATTTTTGTTTGATCTTTGAACTGCTTGAATAGTACAATTTTCTCATTATGCTTCTAAATTTTGGATACCAAACTTATGGAATTGAATTGTTTCTTAGTTTCTGGTTTTGGCCATTAGCATAAAACAGTGTAGTTTTAGCTTATTCAAAGTAAATTTTGTTGCGTGATGTTCTTGATCCC

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTCGATCTCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTATATTGCTTTGACTACCTACTTGAGGACATACAAAATTGGCGATTATGTCGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTACCATGGTCGCACAGGTCGCGTATGGAATGTTACAAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTGGGGAACAGAATTATTAAGAAGAGAATTCATGTCCGAGTCGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTCCGTTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCCGAAGCCAAGGCCAAAGGTGTAGTCATTTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGCGGCTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY*

Homology

[Close]

BLAST of MELO3C009600 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 302.0 bits (772), Expect = 4.0e-81
Identity = 138/164 (84.15%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-80
Identity = 136/164 (82.93%), Postives = 152/164 (92.68%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.7e-43
Identity = 84/157 (53.50%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+GV +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of MELO3C009600 vs. Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 83/157 (52.87%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + ++TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+GV +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of MELO3C009600 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-42
Identity = 90/158 (56.96%), Postives = 112/158 (70.89%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGVVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of MELO3C009600 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.5e-85
Identity = 151/164 (92.07%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.5e-85
Identity = 151/164 (92.07%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TrEMBL
Match: A0A061EXP3_THECC (60S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_024987 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-85
Identity = 153/164 (93.29%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLR+RTRDLFARPFRKKGYI L+TYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKVKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TrEMBL
Match: J3LJV3_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-85
Identity = 153/164 (93.29%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEE RLRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G VI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 302.0 bits (772), Expect = 2.3e-82
Identity = 138/164 (84.15%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 302.0 bits (772), Expect = 2.3e-82
Identity = 138/164 (84.15%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 299.7 bits (766), Expect = 1.1e-81
Identity = 136/164 (82.93%), Postives = 152/164 (92.68%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 299.7 bits (766), Expect = 1.1e-81
Identity = 136/164 (82.93%), Postives = 152/164 (92.68%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 2.1e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 322.8 bits (826), Expect = 3.5e-85
Identity = 151/164 (92.07%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. NCBI nr
Match: gi|823174045|ref|XP_012485652.1| (PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii])

HSP 1 Score: 322.4 bits (825), Expect = 4.6e-85
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWN+TKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MELO3C009600 vs. NCBI nr
Match: gi|573923618|ref|XP_006649384.1| (PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha])

HSP 1 Score: 322.4 bits (825), Expect = 4.6e-85
Identity = 153/164 (93.29%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEE RLRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G VI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of MELO3C009600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL211_ARATH	4.0e-81	84.15	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL212_ARATH	2.0e-80	82.93	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]
RL21A_YEAST	5.7e-43	53.50	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
RL21B_YEAST	1.3e-42	52.87	60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
RL21_CYAPA	3.7e-42	56.96	60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1	[more]

BLAST of MELO3C009600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	1.3e-89	98.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	2.5e-85	92.07	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0B0MJE8_GOSAR	2.5e-85	92.07	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
A0A061EXP3_THECC	3.2e-85	93.29	60S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_024987 PE=4 SV=1	[more]
J3LJV3_ORYBR	3.2e-85	93.29	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]

BLAST of MELO3C009600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09590.1	2.3e-82	84.15	Translation protein SH3-like family protein	[more]
AT1G09690.1	2.3e-82	84.15	Translation protein SH3-like family protein	[more]
AT1G57660.1	1.1e-81	82.93	Translation protein SH3-like family protein	[more]
AT1G57860.1	1.1e-81	82.93	Translation protein SH3-like family protein	[more]

BLAST of MELO3C009600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084684\|ref\|XP_008443016.1\|	2.1e-90	100.00	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|778684693\|ref\|XP_004140433.2\|	1.8e-89	98.78	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|414447252\|gb\|AFW99820.1\|	3.5e-85	92.07	60S ribosomal protein L21 [Gossypium hirsutum]	[more]
gi\|823174045\|ref\|XP_012485652.1\|	4.6e-85	91.46	PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]	[more]
gi\|573923618\|ref\|XP_006649384.1\|	4.6e-85	93.29	PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001147	Ribosomal_L21e
IPR008991	Translation_prot_SH3-like_sf
IPR018259	Ribosomal_L21e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54433	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009600T1	MELO3C009600T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54433	MU54433	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	G3DSA:2.30.30.70		coord: 1..99 score: 5.1
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 2..158 score: 3.4E
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 5..99 score: 7.3
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..99 score: 3.01
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C009600	Csa3G797610	Cucumber (Chinese Long) v2	cumeB223
MELO3C009600	Cla017565	Watermelon (97103) v1	mewmB346
MELO3C009600	ClCG10G017740	Watermelon (Charleston Gray)	mewcgB315
MELO3C009600	Cla97C10G200660	Watermelon (97103) v2	mewmbB316
MELO3C009600	Bhi11G002091	Wax gourd	mewgoB381
MELO3C009600	CSPI03G36200	Wild cucumber (PI 183967)	cpimeB214
MELO3C009600	Cucsa.242460	Cucumber (Gy14) v1	cgymeB412
MELO3C009600	CmaCh14G003980	Cucurbita maxima (Rimu)	cmameB229
MELO3C009600	CmaCh06G005720	Cucurbita maxima (Rimu)	cmameB755
MELO3C009600	CmoCh14G004000	Cucurbita moschata (Rifu)	cmomeB215
MELO3C009600	CmoCh06G005780	Cucurbita moschata (Rifu)	cmomeB747
MELO3C009600	Lsi03G017590	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C009600	Cp4.1LG08g09260	Cucurbita pepo (Zucchini)	cpemeB796
MELO3C009600	Cp4.1LG03g00070	Cucurbita pepo (Zucchini)	cpemeB571
MELO3C009600	CsGy3G033640	Cucumber (Gy14) v2	cgybmeB184
MELO3C009600	CsaV3_3G038560	Cucumber (Chinese Long) v3	cucmeB218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009600	Silver-seed gourd	carmeB0251
MELO3C009600	Silver-seed gourd	carmeB0679
MELO3C009600	Cucumber (Chinese Long) v3	cucmeB574