Cp4.1LG03g00070 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g00070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L21
Location	Cp4.1LG03 : 1856562 .. 1861124 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTGTATTTTGATCCATTTGTCGCCCCCACGGCCCAATTTAATTCGGCCCATTTAAAATAAACCCGAAAACCCTAACTTTCGCGCTATATAAATCCCGAAACCTAGGGTTTCTTTTTTTTTTTTTCCTTCAGATTGTGGGAGTGTAAGAGTGTTTCATCTTGTTTACTTTAGAAGATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACATATTTGAGGACCTTCAAGATCGGCGACTATGTCGACGTTAAAGTGAACGGTGCTGTCCACAAAGGAATGCCGCATAAATTCTACCATGGCCGCACCGGTCGTGTATGGAACGTTACCAAGCGTGCTATTGGTGTTGAGATCAACAAGCAGGTCGATTTCTGTTTCCGTTTTCCTTCGTGTTTGTATTGTTTCTGTTGTCGGTTCTTTTATTAGATCTGTTCTTGGTTTCATTCTGCTGTGTCTTTTTAAAATATCTACGGATTTGGCGATTGAGGTAATCAATTATTATGGGGACTTATTTAGTTTGAGGCTGTAAAAGTTATGGACTCATTTCTGTCTATTAAATTTCTGCTTGCTGTTGATTTGTTCAGAGGATTTTGAATATGTATCTGTTAATTCGTTAAGCAACTCATTCAGTGGTTGTTTCTAAAATTTCTTGGCTTTTGATAGTCGAACACTACGGCTTTGAATGAATATGGATTTTTTTTTTTGCTGTTTGATGTTACTGGAATTTGAATTCATGTTAGACTTGTTTGTAAATAATCGGTCATCTCATGCATTTGAAGAGTCGAATGTTTTGAGCTGTATCTGCCTTGGGGTGGTGTTTATAAATCGATTTAGTTTTTGGCTGTAAAGGGTTATCATTACAATGTATTTTGATGATTTTACAGTCATTTGAACACAATTGTATCTCTGTTATTTGATTATGTTTCAATCAATTTAAACCCACTTACAGGGTCTTCTAATTTTCTATATTAATATTTTCAGGTGGGCAACAGAATCATAAGGAAAAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAACTGAAGGCCGAAGCCAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTCACACCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGTTATTAGTATTTCCTTTTCTTGGATATTGTTGCAATTTACTCCTTGTGCCCCTAAATTTTTTTGGATGCTAAACTTTTCTATCGAAAATTTTCAGCCCTAAGCTTTTGATTTAACTAATGTAGTTTCATCTCACTTAAAAGTAATTTTGTTGCTCTATGCTATAGTTTCATCTCATTATTTAGTTTTCCTTATTACTATTTAAATTAGTTTTCTATGGAATGTTCTTTGTTTGTCATTAGAGATCTTTTAAGCTATGTTCTTTCTGATTGTATTGAAGTTTTTTTAGAATTTTATTTCACTAATTGAGGTGGATTTTGATATGGTGATTTCTAATGTAATTTTTTTCAGGCTTCGGAATTTATGTGAAAAAAAACTCTTTCAATTTTGGTTTATTTGTTTTTTTAAAAAAAATTCACGTGTAACTTCTTTATTGCTTTTATGTTCACATTAATGAAAAATATGTACTATTAATTTTTTTTTGTGTAGTTTTTGATTTATGTTTCATGGGTAATATAATGCATTCTTAAATACGTATTAAATATATAGTGGTAAATATATATAGTCCTAAACATATAGTGGTAAATATATATAATCATGCCTTCTAATATACACAATAGTCAATATATATAATCATGCCTTTTAATATATGTTTTTCACTAAATACTTAATTTTGGTCCTTCGATTTTTTTTTTTNACGATCAACTGAAGGCCGAAGCCAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTCACACCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGTTATTAGTATTTCCTTTTCTTGGATATTGTTGCAATTTACTCCTTGTGCCCCTAAATTTTTTTGGATGCTAAACTTTTCTATCGAAAATTTTCAGCCCTAAGCTTTTGATTTAACTAATGTAGTTTCATCTCACTTAAAAGTAATTTTGTTGCTCTATGCTATAGTTTCATCTCATTTTTTAGTTTTCCTTATTACTATTTAAATTAGTTTTCTATGGAATGTTCTTTGTTTGTCATTAGAGATCTTTTAAGCTATGTTCTTTCTGATTGTATTGAAGTTTTTTTAGAATTTTATTTCACTAATTGAGGTGGATTTTGATATGGTGATTTCTAATGTAATTTTTTTCAGGCTTCGGAATTTATGTGAAAAAAAACTCTTTCAATTTTGGTTTATTTGTTTTTTTAAAAAAAATTCACGTGTAACTTCTTTATTGCTTTTATGTTCACATTAATGAAAAATATGTACTATTAATTTTTTTTTGTGTAGTTTTTGATTTATGTTTCATGGGTAATATAATGCATTCTTAAATACGTATTAAATATATAGTGGTAAATATATATAGTCCTAAACATATAGTGGTAAATATATATAATCATGCCTTCTAATATACACAATAGTCAATATATATAATCATGCCTTTTAATATATGTTTTTCACTAAATACTTAATTTTGGTCCTTCGATTTTTTTTTTTATTACGTGATTTAAGCGAATTAAAATTAGTTTTCACTAATATTAAAGATAAAAAGTGAGCATTGTTGAAAAATTTGAGCGGTAAAAATTAAAGTCGTAGTAAAAATTCAACATTATAAAACTTGGGGGGCCAAGTAAAAAATAATACCATAAAATTTGGGGTTGAAATGAAAATTAAACCTAAAATTCATGGTAAAAGTGCAAATATGTTTCAAAGATGGACCGATTTGGGATATTTTCCTATTAAAACGAAGACTAAATGTCACCAGACGGCCCACTTTGATTCGGCGTATTGAAAATAAACCCAAAACCCTAGAATTCGCACTATATAAATGCCAAAACCTTGTTTCCTTCTTCTTTTTTCTTCAGATCGTGAGTCGGAGTGAGTTTTACTTTGTACTAGCAAGAAGATGCCGGCTGGCCATGGACTTAGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTAACTACTTATTTGAGGACCTTCAAGATCGGCGACTATGTTGACGTCAAAGTGAACGGCGCCGTTCACAAAGGAATGCCGCATAAATTCTACCATGGCCGTACCGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAATAAGCAGGTCGATTTCTGTTTCCGTTTTCTCTCGTGATTGTTTTGGTTCTGTTTTCGGTTCTTTTATTCGATCTGTTCTGGTGTTCATTCTACTCTGTATTCTTGGAATATCTGTGAATTTGGTGATTTAGGTTTAGGCTGGATTTATGGACTCTGTTCTGTCTATTCAGTTTCTGCTTTCTGTTGACTTGTTCAGAGGATGTTGAATATGCATCTGTTAATTTGTTTAGCAACTCATTCAGTTGTTGTTTCGGATATCGCGTGGCTTTTGATAGTCGAATGCTTTGCGTAACTATGGCCTTTTTTTCTTTTTGCCGATTGATGCTGCTGGAATTTGAATTCATGTCAGATTTGTTGGTTGATAATCGGTTATTGCATATGCATTTGAAGAGTTGAATGTTTTGTGCCCTATCTGCCTTAGGGTAGTGTTCATCAATCGATTAGGTTTTTGGATGTAAAGGGTTATCATTATAGGGTGTCTGTATGATTATCCAGTCATCTAAACGAAGTTGTAGCCCCTGTTATTTGATTGTGATTCAAGCAATTTTCAAACCCACTTGTGTTCTGATGTTCTATATTAAAATTTTCAGGTGGGCAACAGAATCATAAGGAAGAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAATGATCAACTGAAGGCTGAAGCCAAGGCCAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTTGTCAATGACCTCAAGGGTGGTTATTAGAACTTCTTTCTTTCAACCTTGTCTTGTTTGGCTGTTTTTTTGAGGTATGTATTTGAACTTCTTGGATAGTGATTGTAATACAGCTGATCTTCTTTTTAGACCAATTGGGCATTTGTGTAGTTTTGGTCATTTGTTACTCCTGATCTACTAAATTCATTGAGTTATTCCAAAGAATCAGAACAAAGAATCAGAACTGCCTGTTATTGGTAAAATTCCTTGTTGGCTCTTTGTAAAATATATCTGGAGGA

mRNA sequence

ATGTTTTATTGTGGGAGTATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACATATTTGAGGACCTTCAAGATCGGCGACTATGTCGACGTTAAAGTGAACGGTGCTGTCCACAAAGGAATGCCGCATAAATTCTACCATGGCCGCACCGGTCGTGTATGGAACGTTACCAAGCGTGCTATTGGTGTTGAGATCAACAAGCAGGTGGGCAACAGAATCATAAGGAAAAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAACTGAAGGCCGAAGCCAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTCACACCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGATCGTGAGTCGGACAAGAAGATGCCGGCTGGCCATGGACTTAGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTAACTACTTATTTGAGGACCTTCAAGATCGGCGACTATGTTGACGTCAAAGTGAACGGCGCCGTTCACAAAGGAATGCCGCATAAATTCTACCATGGCCGTACCGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAATAAGCAGGTGGGCAACAGAATCATAAGGAAGAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAATGATCAACTGAAGGCTGAAGCCAAGGCCAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTTGTCAATGACCTCAAGGGTGGTTATTAGAACTTCTTTCTTTCAACCTTGTCTTGTTTGGCTGTTTTTTTGAGGTATGTATTTGAACTTCTTGGATAGTGATTGTAATACAGCTGATCTTCTTTTTAGACCAATTGGGCATTTGTGTAGTTTTGGTCATTTGTTACTCCTGATCTACTAAATTCATTGAGTTATTCCAAAGAATCAGAACAAAGAATCAGAACTGCCTGTTATTGGTAAAATTCCTTGTTGGCTCTTTGTAAAATATATCTGGAGGA

Coding sequence (CDS)

ATGTTTTATTGTGGGAGTATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACATATTTGAGGACCTTCAAGATCGGCGACTATGTCGACGTTAAAGTGAACGGTGCTGTCCACAAAGGAATGCCGCATAAATTCTACCATGGCCGCACCGGTCGTGTATGGAACGTTACCAAGCGTGCTATTGGTGTTGAGATCAACAAGCAGGTGGGCAACAGAATCATAAGGAAAAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAACTGAAGGCCGAAGCCAAGGCTAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACCGTCACACCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGATCGTGAGTCGGACAAGAAGATGCCGGCTGGCCATGGACTTAGATCCCGTACCAGAGATCTCTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTAACTACTTATTTGAGGACCTTCAAGATCGGCGACTATGTTGACGTCAAAGTGAACGGCGCCGTTCACAAAGGAATGCCGCATAAATTCTACCATGGCCGTACCGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAATAAGCAGGTGGGCAACAGAATCATAAGGAAGAGAATCCATGTCCGAGTTGAGCACGTGCAGCCCTCACGGTGCGCCGAGGAGTTCCGTTTGAGGAAGGTGAAGAATGATCAACTGAAGGCTGAAGCCAAGGCCAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTTGTCAATGACCTCAAGGGTGGTTATTAG

Protein sequence

MFYCGSMPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGDRESDKKMPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY

Homology

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BLAST of Cp4.1LG03g00070 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 305.8 bits (782), Expect = 5.7e-82
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-81
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-41
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 1


Query: 7   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 66
           MP   GLR+RTR LF+R FR  G +  TT+LRTF++GDYVD+K  G VHKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 67  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 126
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R  +N +   EAK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 127 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 164
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of Cp4.1LG03g00070 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-41
Identity = 91/158 (57.59%), Postives = 114/158 (72.15%), Query Frame = 1


Query: 7   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 66
           MP  +G R+RTR LFAR F+  G + L+TYL  FKIG+YVDV  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 67  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 126
           TG VWNVTKRAIGVEINK+V +RII+KRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 127 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 162
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of Cp4.1LG03g00070 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 81/157 (51.59%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 7   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 66
           M   HG RSRTR +F R FRK G + L+TYL+ +K+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 67  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 126
           TG V+NVTK ++GV INK VGNR + KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 127 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 162
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of Cp4.1LG03g00070 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 9.2e-87
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 5.1e-85
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 5.1e-85
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TrEMBL
Match: A0A0D2SXW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.6e-85
Identity = 152/164 (92.68%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWN+TKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TrEMBL
Match: A0A0D2NQZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.6e-85
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLFARPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRCAEEF+LRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCAEEFKLRKVKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKGEVI TKRQPEGP+PGFMV+GA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPRPGFMVDGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 305.8 bits (782), Expect = 3.2e-83
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 305.8 bits (782), Expect = 3.2e-83
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 304.7 bits (779), Expect = 7.2e-83
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 304.7 bits (779), Expect = 7.2e-83
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGR+WNVTKRA+GVE+NKQ+GNRIIRKRIHVRVEHVQ SRCAEEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 5.9e-87
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 1.3e-86
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 322.8 bits (826), Expect = 7.3e-85
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRC EEF+LRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKGEVI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. NCBI nr
Match: gi|823136611|ref|XP_012468071.1| (PREDICTED: 60S ribosomal protein L21-1 [Gossypium raimondii])

HSP 1 Score: 322.4 bits (825), Expect = 9.5e-85
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLFARPFRKKGYI L+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVE+NKQVGNRIIRKRIHVRVEHVQPSRCAEEF+LRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCAEEFKLRKVKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           AKGEVI TKRQPEGP+PGFMV+GA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPRPGFMVDGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cp4.1LG03g00070 vs. NCBI nr
Match: gi|573923618|ref|XP_006649384.1| (PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha])

HSP 1 Score: 322.4 bits (825), Expect = 9.5e-85
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 1


Query: 176 MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 235
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 236 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 295
           TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRC EE RLRK+KNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 296 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 340
           A+GEVI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g00070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL211_ARATH	5.7e-82	86.59	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL212_ARATH	1.3e-81	85.98	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]
RL21_DICDI	1.3e-41	54.72	60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1	[more]
RL21_CYAPA	2.2e-41	57.59	60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1	[more]
RL21A_YEAST	1.4e-40	51.59	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of Cp4.1LG03g00070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	9.2e-87	95.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
A0A0B0MJE8_GOSAR	5.1e-85	93.29	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	5.1e-85	93.29	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0D2SXW0_GOSRA	6.6e-85	92.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1	[more]
A0A0D2NQZ1_GOSRA	6.6e-85	93.90	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231800 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g00070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09590.1	3.2e-83	86.59	Translation protein SH3-like family protein	[more]
AT1G09690.1	3.2e-83	86.59	Translation protein SH3-like family protein	[more]
AT1G57660.1	7.2e-83	85.98	Translation protein SH3-like family protein	[more]
AT1G57860.1	7.2e-83	85.98	Translation protein SH3-like family protein	[more]

BLAST of Cp4.1LG03g00070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084684\|ref\|XP_008443016.1\|	5.9e-87	96.34	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|778684693\|ref\|XP_004140433.2\|	1.3e-86	95.73	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|414447252\|gb\|AFW99820.1\|	7.3e-85	93.29	60S ribosomal protein L21 [Gossypium hirsutum]	[more]
gi\|823136611\|ref\|XP_012468071.1\|	9.5e-85	93.90	PREDICTED: 60S ribosomal protein L21-1 [Gossypium raimondii]	[more]
gi\|573923618\|ref\|XP_006649384.1\|	9.5e-85	94.51	PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018259	Ribosomal_L21e_CS
IPR008991	Translation_prot_SH3-like_sf
IPR001147	Ribosomal_L21e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g00070.1	Cp4.1LG03g00070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	G3DSA:2.30.30.70		coord: 176..274 score: 1.1E-37coord: 7..105 score: 1.1
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 8..164 score: 9.7E
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 11..105 score: 2.6E-43coord: 180..274 score: 2.6
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 178..274 score: 4.21E-34coord: 9..105 score: 4.21
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 212..237 score: -coord: 43..68 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g00070	Cucsa.242460	Cucumber (Gy14) v1	cgycpeB0644
Cp4.1LG03g00070	CmaCh14G003980	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g00070	CmaCh06G005720	Cucurbita maxima (Rimu)	cmacpeB830
Cp4.1LG03g00070	CmoCh06G005780	Cucurbita moschata (Rifu)	cmocpeB783
Cp4.1LG03g00070	CmoCh14G004000	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g00070	Cla017565	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g00070	Csa3G797610	Cucumber (Chinese Long) v2	cpecuB597
Cp4.1LG03g00070	MELO3C009600	Melon (DHL92) v3.5.1	cpemeB571
Cp4.1LG03g00070	ClCG10G017740	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g00070	CSPI03G36200	Wild cucumber (PI 183967)	cpecpiB599
Cp4.1LG03g00070	Lsi03G017590	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g00070	MELO3C009600.2	Melon (DHL92) v3.6.1	cpemedB678
Cp4.1LG03g00070	CsaV3_3G038560	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g00070	Bhi11G002091	Wax gourd	cpewgoB0745
Cp4.1LG03g00070	CsGy3G033640	Cucumber (Gy14) v2	cgybcpeB395

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g00070	Cp4.1LG08g09260	Cucurbita pepo (Zucchini)	cpecpeB487

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g00070	Silver-seed gourd	carcpeB0353