Cucsa.242460 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.242460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L21
Locationscaffold02047 : 2197975 .. 2198997 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATGAACTAGAGTTTCCTCATTTTGTGAGCGAGTGTGAGAGAAAGTTCCTCCTCCAATCATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTCGGGATTCTTTTTTAAAATCTGTTCTAGTTTTTAAAATGTATGTGAATCTGGTGATTAAGGGTAACAGATTGTGTTTGGTTTTGATAGAATCTTAATTAGTTTTTGGACTCTGTTTTTCTTATTAAACTTGTGAATCTTAATGTATGTTGTAGTTTGATGGGTTCTGGAATATGATGAGAGAAAGTTTCATTCTGTTTTGGACTCTGCTTTATATATAAATTAAATGTGTGATTTTCGGGATGAATTTTGTAGGTTGGGAACAGAATTATTAAAAAAaGAaTTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTTATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGAAATTAATTTTATCCTCTTTGAACTTTTGCCTTGTTTTGTAGTTTCATTTTTGTTTGATATTTGAACTACTTTAATAGTACAATTTTATCATATTATGCTTCTAAATTTTGGATACGAAACTTATGGAATTAAATTGTTTCTTAGTTTCTAGTTTTGGCCATTAGCATAAGGAAGTGTAGTTTTAGCTTATTAAAAGTAAATTTTGTTGCCTT

mRNA sequence

GAATGAACTAGAGTTTCCTCATTTTGTGAGCGAGTGTGAGAGAAAGTTCCTCCTCCAATCATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTGGGAACAGAATTATTAAAAAAAGAATTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTTATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGAAATTAATTTTATCCTCTTTGAACTTTTGCCTTGTTTTGTAGTTTCATTTTTGTTTGATATTTGAACTACTTTAATAGTACAATTTTATCATATTATGCTTCTAAATTTTGGATACGAAACTTATGGAATTAAATTGTTTCTTAGTTTCTAGTTTTGGCCATTAGCATAAGGAAGTGTAGTTTTAGCTTATTAAAAGTAAATTTTGTTGCCTT

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTGGGAACAGAATTATTAAAAAAaGAaTTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTTATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGA

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY*
Homology
[Close]
BLAST of Cucsa.242460 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 9.0e-81
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.5e-80
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 83/157 (52.87%), Postives = 113/157 (71.97%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]
BLAST of Cucsa.242460 vs. Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42
Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + ++TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]
BLAST of Cucsa.242460 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGTVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]
BLAST of Cucsa.242460 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.1e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.5e-85
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.5e-85
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TrEMBL
Match: J3LJV3_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.2e-85
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEE RLRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G VI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TrEMBL
Match: A0A0D2SXW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.2e-85
Identity = 149/164 (90.85%), Postives = 161/164 (98.17%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWN+TKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.1e-82
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.1e-82
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 298.5 bits (763), Expect = 2.5e-81
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 298.5 bits (763), Expect = 2.5e-81
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.6e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 321.6 bits (823), Expect = 7.9e-85
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. NCBI nr
Match: gi|823174045|ref|XP_012485652.1| (PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 149/164 (90.85%), Postives = 161/164 (98.17%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI L+TYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWN+TKRAIGVE+NKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK+KND+LKAEAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCTEEFKLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VI TKRQPEGPKPGFMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]
BLAST of Cucsa.242460 vs. NCBI nr
Match: gi|573923618|ref|XP_006649384.1| (PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1 

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEE RLRK+KND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G VI TKRQPEGPKPGFMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:
BLAST of Cucsa.242460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL211_ARATH9.0e-8183.5460S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2[more]
RL212_ARATH4.5e-8082.3260S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1[more]
RL21A_YEAST1.3e-4252.8760S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
RL21B_YEAST2.8e-4252.2360S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
RL21_CYAPA2.8e-4256.9660S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1[more]
BLAST of Cucsa.242460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEZ0_CUCSA1.1e-90100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1[more]
A0A0U1WT33_GOSHI5.5e-8591.4660S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1[more]
A0A0B0MJE8_GOSAR5.5e-8591.4660S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1[more]
J3LJV3_ORYBR7.2e-8592.68Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
A0A0D2SXW0_GOSRA7.2e-8590.85Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1[more]
BLAST of Cucsa.242460 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09590.15.1e-8283.54 Translation protein SH3-like family protein[more]
AT1G09690.15.1e-8283.54 Translation protein SH3-like family protein[more]
AT1G57660.12.5e-8182.32 Translation protein SH3-like family protein[more]
AT1G57860.12.5e-8182.32 Translation protein SH3-like family protein[more]
BLAST of Cucsa.242460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778684693|ref|XP_004140433.2|1.6e-90100.00PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus][more]
gi|659084684|ref|XP_008443016.1|1.8e-8998.78PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo][more]
gi|414447252|gb|AFW99820.1|7.9e-8591.4660S ribosomal protein L21 [Gossypium hirsutum][more]
gi|823174045|ref|XP_012485652.1|1.0e-8490.85PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii][more]
gi|573923618|ref|XP_006649384.1|1.0e-8492.68PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001147Ribosomal_L21e
IPR008991Translation_prot_SH3-like_sf
IPR018259Ribosomal_L21e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.242460.1Cucsa.242460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001147Ribosomal protein L21eGENE3DG3DSA:2.30.30.70coord: 1..99
score: 6.0
IPR001147Ribosomal protein L21ePANTHERPTHR2098160S RIBOSOMAL PROTEIN L21coord: 2..158
score: 9.1E
IPR001147Ribosomal protein L21ePFAMPF01157Ribosomal_L21ecoord: 5..99
score: 1.8
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 3..99
score: 3.91
IPR018259Ribosomal protein L21e, conserved sitePROSITEPS01171RIBOSOMAL_L21Ecoord: 37..62
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.242460Cla017565Watermelon (97103) v1cgywmB456
Cucsa.242460Csa3G797610Cucumber (Chinese Long) v2cgycuB344
Cucsa.242460MELO3C009600Melon (DHL92) v3.5.1cgymeB412
Cucsa.242460ClCG10G017740Watermelon (Charleston Gray)cgywcgB426
Cucsa.242460CSPI03G36200Wild cucumber (PI 183967)cgycpiB360
Cucsa.242460CmaCh14G003980Cucurbita maxima (Rimu)cgycmaB0674
Cucsa.242460CmaCh06G005720Cucurbita maxima (Rimu)cgycmaB0681
Cucsa.242460CmoCh06G005780Cucurbita moschata (Rifu)cgycmoB0681
Cucsa.242460CmoCh14G004000Cucurbita moschata (Rifu)cgycmoB0675
Cucsa.242460Lsi03G017590Bottle gourd (USVL1VR-Ls)cgylsiB402
Cucsa.242460Cp4.1LG03g00070Cucurbita pepo (Zucchini)cgycpeB0644
Cucsa.242460Cp4.1LG08g09260Cucurbita pepo (Zucchini)cgycpeB0650
Cucsa.242460MELO3C009600.2Melon (DHL92) v3.6.1cgymedB408
Cucsa.242460CsaV3_3G038560Cucumber (Chinese Long) v3cgycucB363
Cucsa.242460CsaV3_7G005620Cucumber (Chinese Long) v3cgycucB368
Cucsa.242460Cla97C10G200660Watermelon (97103) v2cgywmbB425
Cucsa.242460Bhi11G002091Wax gourdcgywgoB480
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.242460Cucumber (Gy14) v1cgycgyB094
Cucsa.242460Wild cucumber (PI 183967)cgycpiB361
Cucsa.242460Cucumber (Chinese Long) v2cgycuB345
Cucsa.242460Melon (DHL92) v3.5.1cgymeB413
Cucsa.242460Watermelon (Charleston Gray)cgywcgB430
Cucsa.242460Watermelon (97103) v1cgywmB460
Cucsa.242460Silver-seed gourdcarcgyB0294
Cucsa.242460Silver-seed gourdcarcgyB0758
Cucsa.242460Cucumber (Chinese Long) v3cgycucB364