Cucsa.242460.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAATGAACTAGAGTTTCCTCATTTTGTGAGCGAGTGTGAGAGAAAGTTCCTCCTCCAATCATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTCGGGATTCTTTTTTAAAATCTGTTCTAGTTTTTAAAATGTATGTGAATCTGGTGATTAAGGGTAACAGATTGTGTTTGGTTTTGATAGAATCTTAATTAGTTTTTGGACTCTGTTTTTCTTATTAAACTTGTGAATCTTAATGTATGTTGTAGTTTGATGGGTTCTGGAATATGATGAGAGAAAGTTTCATTCTGTTTTGGACTCTGCTTTATATATAAATTAAATGTGTGATTTTCGGGATGAATTTTGTAGGTTGGGAACAGAATTATTAAAAAAaGAaTTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTTATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGAAATTAATTTTATCCTCTTTGAACTTTTGCCTTGTTTTGTAGTTTCATTTTTGTTTGATATTTGAACTACTTTAATAGTACAATTTTATCATATTATGCTTCTAAATTTTGGATACGAAACTTATGGAATTAAATTGTTTCTTAGTTTCTAGTTTTGGCCATTAGCATAAGGAAGTGTAGTTTTAGCTTATTAAAAGTAAATTTTGTTGCCTT GAATGAACTAGAGTTTCCTCATTTTGTGAGCGAGTGTGAGAGAAAGTTCCTCCTCCAATCATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTGGGAACAGAATTATTAAAAAAAGAATTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTTATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGAAATTAATTTTATCCTCTTTGAACTTTTGCCTTGTTTTGTAGTTTCATTTTTGTTTGATATTTGAACTACTTTAATAGTACAATTTTATCATATTATGCTTCTAAATTTTGGATACGAAACTTATGGAATTAAATTGTTTCTTAGTTTCTAGTTTTGGCCATTAGCATAAGGAAGTGTAGTTTTAGCTTATTAAAAGTAAATTTTGTTGCCTT ATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTGGGAACAGAATTATTAAAAAAaGAaTTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTTATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGA MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY*
BLAST of Cucsa.242460.1 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2) HSP 1 Score: 300.8 bits (769), Expect = 9.0e-81 Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 4.5e-80 Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42 Identity = 83/157 (52.87%), Postives = 113/157 (71.97%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42 Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42 Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 1.1e-90 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 5.5e-85 Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 5.5e-85 Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TrEMBL
Match: J3LJV3_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 7.2e-85 Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TrEMBL
Match: A0A0D2SXW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 7.2e-85 Identity = 149/164 (90.85%), Postives = 161/164 (98.17%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein) HSP 1 Score: 300.8 bits (769), Expect = 5.1e-82 Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein) HSP 1 Score: 300.8 bits (769), Expect = 5.1e-82 Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein) HSP 1 Score: 298.5 bits (763), Expect = 2.5e-81 Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein) HSP 1 Score: 298.5 bits (763), Expect = 2.5e-81 Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]) HSP 1 Score: 340.5 bits (872), Expect = 1.6e-90 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]) HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89 Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum]) HSP 1 Score: 321.6 bits (823), Expect = 7.9e-85 Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. NCBI nr
Match: gi|823174045|ref|XP_012485652.1| (PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]) HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84 Identity = 149/164 (90.85%), Postives = 161/164 (98.17%), Query Frame = 1
BLAST of Cucsa.242460.1 vs. NCBI nr
Match: gi|573923618|ref|XP_006649384.1| (PREDICTED: 60S ribosomal protein L21-1 [Oryza brachyantha]) HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84 Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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