CmoCh05G011720 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACATGAACGCTATCCATCCTCAAGAGTAGTTGTCCCTACCAAAGAAAATCCCAAACCACTCAATTCCTCATGGAACCAACACACCTTCAACCCCATTTCCCCTCTGCAATCCATGTCTCACCATATCTGAATCTCTCCATCTTCCCATGGAAACCATTCTCTCTCCACACACACTCTCTCCTCTCCTCAACCCCAAACCCTCCTCTCCCAAGAATCTCTTCCCTTATTCCTTCCAACCCAGAAGACATTTTGTTTCTTTCTCTAACCCCATTTCGTTCTCTCTCAAAAACCCCTCTCCCAAGTCTCTCCGATCATCGCTCCCAGTTCCCTCGAATTGGTTCTCCCATCTCCAACATGGGTTGGCGGCGCTAGCAATTTCTTTAGCGCTCAACTTTTCCCCATTGTTGGCCACCCACAATGCTCTGGCGTCTGAATTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTAGTGGACGATGCTGGAGTTCTCAGTAGAGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTCGAGGAAGAATTTTCACATTGATTTTGTCACTGTTAGAAAGCTTACTGTAAGTCCTTCAAATTCTTGATAGAGAAACAAATCGTAGAACTCATGAAAATAATTTGATTTTTGTTATTGTGGGAAGAGAATTGTACTTTATGTTAGAGGAAATGTGTTAATAGGCTGATGATTGTTTATGAAGATTTGAAAATCTTACTGAAGAGTGATTATCAGAAAGTGGGTATCATATTGTGATGGATTGTTTGAAATGAAGGCTACCAAAACTTGGAATGTTTAGAGATATCACCTCTAACCTAAGGTCTTGGTTTAAGCTCTTTGGGGGAAACTTAGTAATCCTTCTTGTCTCTCAAGGTTGGTTTTGGTTGAGCAGTGCTTATCCAAAGAGGGGTAAGGTGGGCGGTAATGGTTGCAAACGGCAAGAAGTGGACTCGGGAATCTAATATAGTGAGATCTCACATTGGTTGGAGAGAACAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCCAGTAGACGCGTTTTAAAAATCTTGAGGGGAAGCTTGGAAGGGAAAACAAACCCAAAGTGGACAATATCTGCTAGCGGTGGACTTGAGCTATTACAAATGGTATCAGAGTTAGACATCGGGCGATGTGCTTGTGAGGACGCTAGGCCCCCAAGGGGGGTGGATTGTGAGATCCTACATCGGTTGGAGAAGAGAACGAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAACAGATGCATTTTAAAAACCTTGAGGGGAAGGTTGAAAGGGAAAGCCCAAAGCGGACAATATTTGCTAGCGATGTGTTTGAGCTATTATAAATGGTATCAGAGCTAGACATAGGGCGGTGTGCCAGCGAGGACACTAGGCCCCCAAAGGAGGTGGATTGTGAGATCCTACATCTGTTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGTGTCTTAAAAACCTTGCGGGAAGCCCAGAAGGGAAAGCTCAAAGCAGACAATATTTGCTAGCGGTGGGCTTGAGCTATTACAAATGGTATCAAAGCCAGACACCGGGCAGTGTGCCAGTGAGAATGCTAGGCCTCCAAAGGGGGTATATTGTGAGATCCCACGTCGATTGGGGAGAAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAACTCCAGAAGGGAAAGCCCATAGCAGACAATATTTCCTAGCGGCGGGCTTGAGCTATTACAAATGGTATCATGGACAGACATTGGGCAGTGTGCCAGCGAGGATGCTAGGCCCTCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTAGAGAGGAGAACAAAACATTGCTTACAAGAGTGTGGAAACCTCTCCTTACCAGACGCTGAAAGGGAAAGCCCAAAGAGGACAATACCTGCTAGCGGTGGGCTTGAATCGTTACAAAAATATATGAAAATGCCTAACGAAAAGATCTCTATGAACTCTGATATGAATTTATCAACTGCTGGATGCAGAGCAAAGCTGATGCGTTTGAGTATGCTGATCAAGTTTTGGAGCGTTGGTATCCCACTGTGGAAGATGGCAACAACAAAGGTATAGTTGTTCTTGTCACCAGTCAGAAAGAAGGAGCCATTACTGGTGGGCCTGCCTTTATCCAAGCAGTTGGAGAAAACATACTTGATGCTACAGTAACAGAGAACCTCCCAGGTACCACTTCCTCCACTTATGAATGTTATGTCAAATCTGTCATGAACGTTGAACAAAGCTCCCACTTAAAGCTGCTAATTTCCATCAGCTTCCTTAGCTAACAATCTCCACTGCCTCTTGCTCAACTTACATTGTAACACATTACAACTAATAGGTGCCTTAAGTGCATTGGTATCTTGTTGTTGAACTTAAAATCGAGTGTCTGCAATAGCCCAAGTTCACCGCTAGCACATATTGTCCGCTTTGGCTCATTACAAATCGCCGTCAGCCTCACAGTTTTAAAACGCATCTGCTAGGGAGAGGTTTCCACGCCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACTGATATGGGATCTCCCAATCCACCCTTCTTGGAGGCCCAACGTCCTCATTGATACACCGCCTGGTGTTTGGCTTTGACACCATTTGTTATAGTCAAAACCCACCGCTAGTAGATATTGTCCGCTTTGCTCGTTACATATCGCTATTAGCCTCACGGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCATTTCCCTCTTCAACCGATGTGGGATCTCACACTGTGTGTTTGATACGAGTCGCCCTTGCTTATAAGTTTCTCATTTTTTAAGGAAAAGTGTAAATAGCCCAAGCCCACCGCTAGGAGAAATTGTCGTTTTTGGACTCTCTTTCGAGCTTCCTCTCAAGGTCTTAAAATGCGTCTGGTAAGGAGAGGTTTCCACATCCTTATAAGCAATAAGCAGTGCTTTGTTCTCCTCTCTAACTGATGTGGGATCTCACAATCCACCCCCCTTGGGGGCCCAACATTCTCACTGGCACACCGCCCGGTGTCTGGCTCTGATACTATTTGTAACAGCTCAAGCCCACCGCTAACAAATATTGTTTTCTTTGGGCTTTCCCTTCTGGGCTTCCTCTCAAGGTTATAAAACGCGTCTGGTAGGGAGAGATTTTCACACTTTTATAAGCAATGTTTCATTCTCCTCTCCAACCGATATAAGATCTCACAATCCACTGAGCCCTTAAAGGGGATGGATTATGAGATCCCATATCGGTTGGAGAGGGGGACAAAACGTTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAATTGTGAGACTGACGGTGATACGTAGTGGGCCAAAGCGGACAATATCTTCTAGCGGTAGGCTTGAACTGTTACAAAAAGAAAACCACAAATGAACTGTTGTTGTTTTGTATTGCTACCCCATATATGGAGTGCTTTGTTCGAAGCATTTCTAACCCTATGTGAATTATGGTTGTAGATGTTAGTTTATGACAAAGTGCAGATTGAGTAAGATTGTTTATTATGCAACTGCAGTCTTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGCGCGAAGCGGTTAGTTGCTGCCATCGACGGTCTTCCAGATCCGGGCGGTCCTTCGTTTAAGGAAAATAAGCGCGAATCTAACTTCAAATCACGAGAAGAGACAGAGGAGAAACGAGGTCAGTTTTCTCTTGTAGTTGGAGGTTTGCTGGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTAAAACAATCCTCTGTTTCCTTCACATTCGTATGTATAACCATAATGTTCTACAAATAGGATCGCTACAACATCATTTGCAACAAACCTGTTATAAACCAAGAGTTCAGCTTTTCATATAATTAGGGGTATTGGAGGTTCCACTCTTTGTACATGTTCATTGCGGAATAAGGAAGTTCCTTCTCGATTTTGCATACCAATTGGCTTACATTGCCTTTGGTAGGCAAACCATTGCCTTTGGGAGGCGAGACCTAATCATAACGCACAATCAC ACATGAACGCTATCCATCCTCAAGAGTAGTTGTCCCTACCAAAGAAAATCCCAAACCACTCAATTCCTCATGGAACCAACACACCTTCAACCCCATTTCCCCTCTGCAATCCATGTCTCACCATATCTGAATCTCTCCATCTTCCCATGGAAACCATTCTCTCTCCACACACACTCTCTCCTCTCCTCAACCCCAAACCCTCCTCTCCCAAGAATCTCTTCCCTTATTCCTTCCAACCCAGAAGACATTTTGTTTCTTTCTCTAACCCCATTTCGTTCTCTCTCAAAAACCCCTCTCCCAAGTCTCTCCGATCATCGCTCCCAGTTCCCTCGAATTGGTTCTCCCATCTCCAACATGGGTTGGCGGCGCTAGCAATTTCTTTAGCGCTCAACTTTTCCCCATTGTTGGCCACCCACAATGCTCTGGCGTCTGAATTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTAGTGGACGATGCTGGAGTTCTCAGTAGAGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTCGAGGAAGAATTTTCACATTGATTTTGTCACTGTTAGAAAGCTTACTAGCAAAGCTGATGCGTTTGAGTATGCTGATCAAGTTTTGGAGCGTTGGTATCCCACTGTGGAAGATGGCAACAACAAAGGTATAGTTGTTCTTGTCACCAGTCAGAAAGAAGGAGCCATTACTGGTGGGCCTGCCTTTATCCAAGCAGTTGGAGAAAACATACTTGATGCTACAGTAACAGAGAACCTCCCAGTCTTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGCGCGAAGCGGTTAGTTGCTGCCATCGACGGTCTTCCAGATCCGGGCGGTCCTTCGTTTAAGGAAAATAAGCGCGAATCTAACTTCAAATCACGAGAAGAGACAGAGGAGAAACGAGGTCAGTTTTCTCTTGTAGTTGGAGGTTTGCTGGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTAAAACAATCCTCTGTTTCCTTCACATTCGTATGTATAACCATAATGTTCTACAAATAGGATCGCTACAACATCATTTGCAACAAACCTGTTATAAACCAAGAGTTCAGCTTTTCATATAATTAGGGGTATTGGAGGTTCCACTCTTTGTACATGTTCATTGCGGAATAAGGAAGTTCCTTCTCGATTTTGCATACCAATTGGCTTACATTGCCTTTGGTAGGCAAACCATTGCCTTTGGGAGGCGAGACCTAATCATAACGCACAATCAC ATGGAAACCATTCTCTCTCCACACACACTCTCTCCTCTCCTCAACCCCAAACCCTCCTCTCCCAAGAATCTCTTCCCTTATTCCTTCCAACCCAGAAGACATTTTGTTTCTTTCTCTAACCCCATTTCGTTCTCTCTCAAAAACCCCTCTCCCAAGTCTCTCCGATCATCGCTCCCAGTTCCCTCGAATTGGTTCTCCCATCTCCAACATGGGTTGGCGGCGCTAGCAATTTCTTTAGCGCTCAACTTTTCCCCATTGTTGGCCACCCACAATGCTCTGGCGTCTGAATTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTAGTGGACGATGCTGGAGTTCTCAGTAGAGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTCGAGGAAGAATTTTCACATTGATTTTGTCACTGTTAGAAAGCTTACTAGCAAAGCTGATGCGTTTGAGTATGCTGATCAAGTTTTGGAGCGTTGGTATCCCACTGTGGAAGATGGCAACAACAAAGGTATAGTTGTTCTTGTCACCAGTCAGAAAGAAGGAGCCATTACTGGTGGGCCTGCCTTTATCCAAGCAGTTGGAGAAAACATACTTGATGCTACAGTAACAGAGAACCTCCCAGTCTTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGCGCGAAGCGGTTAGTTGCTGCCATCGACGGTCTTCCAGATCCGGGCGGTCCTTCGTTTAAGGAAAATAAGCGCGAATCTAACTTCAAATCACGAGAAGAGACAGAGGAGAAACGAGGTCAGTTTTCTCTTGTAGTTGGAGGTTTGCTGGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTAA
BLAST of CmoCh05G011720 vs. Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 1.3e-111 Identity = 212/295 (71.86%), Postives = 247/295 (83.73%), Query Frame = 1
BLAST of CmoCh05G011720 vs. Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2) HSP 1 Score: 382.1 bits (980), Expect = 5.5e-105 Identity = 210/305 (68.85%), Postives = 249/305 (81.64%), Query Frame = 1
BLAST of CmoCh05G011720 vs. Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1) HSP 1 Score: 382.1 bits (980), Expect = 5.5e-105 Identity = 210/305 (68.85%), Postives = 249/305 (81.64%), Query Frame = 1
BLAST of CmoCh05G011720 vs. TrEMBL
Match: A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020910 PE=4 SV=1) HSP 1 Score: 508.4 bits (1308), Expect = 5.7e-141 Identity = 266/297 (89.56%), Postives = 278/297 (93.60%), Query Frame = 1
BLAST of CmoCh05G011720 vs. TrEMBL
Match: A0A0B0PCT8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05899 PE=4 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 9.4e-128 Identity = 239/295 (81.02%), Postives = 265/295 (89.83%), Query Frame = 1
BLAST of CmoCh05G011720 vs. TrEMBL
Match: A0A0D2SSZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G294200 PE=4 SV=1) HSP 1 Score: 457.6 bits (1176), Expect = 1.1e-125 Identity = 236/295 (80.00%), Postives = 262/295 (88.81%), Query Frame = 1
BLAST of CmoCh05G011720 vs. TrEMBL
Match: A0A061F263_THECC (Thylakoid lumen 18.3 kDa protein OS=Theobroma cacao GN=TCM_026607 PE=4 SV=1) HSP 1 Score: 455.7 bits (1171), Expect = 4.4e-125 Identity = 235/295 (79.66%), Postives = 261/295 (88.47%), Query Frame = 1
BLAST of CmoCh05G011720 vs. TrEMBL
Match: M5WJ69_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009374mg PE=4 SV=1) HSP 1 Score: 453.8 bits (1166), Expect = 1.7e-124 Identity = 230/295 (77.97%), Postives = 263/295 (89.15%), Query Frame = 1
BLAST of CmoCh05G011720 vs. TAIR10
Match: AT1G54780.1 (AT1G54780.1 thylakoid lumen 18.3 kDa protein) HSP 1 Score: 404.1 bits (1037), Expect = 7.6e-113 Identity = 212/295 (71.86%), Postives = 247/295 (83.73%), Query Frame = 1
BLAST of CmoCh05G011720 vs. NCBI nr
Match: gi|659070442|ref|XP_008455096.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo]) HSP 1 Score: 528.9 bits (1361), Expect = 5.8e-147 Identity = 275/296 (92.91%), Postives = 283/296 (95.61%), Query Frame = 1
BLAST of CmoCh05G011720 vs. NCBI nr
Match: gi|449442857|ref|XP_004139197.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis sativus]) HSP 1 Score: 508.4 bits (1308), Expect = 8.1e-141 Identity = 266/297 (89.56%), Postives = 278/297 (93.60%), Query Frame = 1
BLAST of CmoCh05G011720 vs. NCBI nr
Match: gi|728841778|gb|KHG21221.1| (hypothetical protein F383_05899 [Gossypium arboreum]) HSP 1 Score: 464.5 bits (1194), Expect = 1.3e-127 Identity = 239/295 (81.02%), Postives = 265/295 (89.83%), Query Frame = 1
BLAST of CmoCh05G011720 vs. NCBI nr
Match: gi|823196841|ref|XP_012493059.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Gossypium raimondii]) HSP 1 Score: 457.6 bits (1176), Expect = 1.6e-125 Identity = 236/295 (80.00%), Postives = 262/295 (88.81%), Query Frame = 1
BLAST of CmoCh05G011720 vs. NCBI nr
Match: gi|590643887|ref|XP_007030928.1| (Thylakoid lumen 18.3 kDa protein [Theobroma cacao]) HSP 1 Score: 455.7 bits (1171), Expect = 6.2e-125 Identity = 235/295 (79.66%), Postives = 261/295 (88.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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