CmoCh02G013160 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGATCGCCATTAGAGAATATTCTCGAGCATCTTTTTTTTCTTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAAGCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGGTTTTAATCTAGTTTTTCACTTTTGAAGTTGTTACACTTTCTTGCGTAAAACTTGGCGCGAGAAATGGTTATTTTTTGTGTTGAGAGTTCGAATTGGAAGTATCGTTGATCTAATCTTGTTTTCTAGATTTTCGCTGGTGAAGGACTAATTGAAGTGTCATCGTCGGTTTAGTCTTGTTTTATTTCATTTTCAAGATTTTCGGGGCGTCGATAAGCGTATTTCTGCTTTTTAATATCAAGGAAGTACGTGGTCTAAATGAATGGATTTGATGAGCGTGTTTTTTTTCTTTTACTCTGAAGATCCGTAGGAAGCGGGAGCTATTGTTAACATTCATTGATTTCCGTTATCCGATTGCCTGCTAATAGATCACCGTTGTTTTCAAATTGTGAATGGTCACCTGCGCATGCTATTTTATTTTCCAATGAAAGTTCTTAATTCTTGCCCTTGGTGTGGCATATTATTGAAGTGTCTCTTTTCAAACATTAGTCATTTGCATAAATATATTTTGAGGATTGCTAAGTTGCTGAACTTCTCTGTTCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGGTTTGTTCTTGTTGATTAATCTTTCATCTATCTATTAATAGTTTCTATAGCACGACTTTCATATGCTATACATTAGGTAATTTGTTGATCCGTTCCTTTTCTGTATTTTGTATGGGAATCTTTTTTGCAGTCAAATGTTGACGTTCTATAGATGGTGCAATTCTTATGCTGCATTTATCATATATATTTCATTTCATTGTGGTTCTATGCTTGAATTGGAGTTGGAGTCTTAAGATCTTGCGAACATATTCCTGGGACTCCGCTAAACTTTATAGGAGAAAATTCATTGTATCCATATTGCTATTGGTACAATGTTTCTAATTGTGCTTCAGGTTGCTGGGATTTAATGGAAGAGGTATGCTATTTTAGATTTATAGCCCAAGTATCTTGGAGTCGGAGGAAATGTATGGTTCAGAGTCTGATGGTTAATCTGTTAATTCTCGTCTTATTTAGTATGTTAATAATTAATTATTGATTATTGAAGTTAGAATGCTTGCTTGGTGAGACTGGGATAGAAACCTGTTGTACTCGGTACTCGGTGACTTATTGTGAGCCTATGAATCTCATAGATGTCGGCTTTGGTAACGTGTTCCTATTCTACGTAGGGTTGGATACTTGTTAAATCGGACAAATATCAAACACTGTATTGAACATTTATGGATTTCAATAGACCTGAATCAGACGCATATTGAACAATTATTAGGCATTTGAACTAAGTGTTGAAACATATGTTGAACAAGGCTGGGATGTTTAGAAAATGTCAATGTCCGTGCTAGTGTCTATGCTTCTTTGTCATTAGCCGATTACTCTTTCATCACCTCCAAATTGTCATCACATACTCGATGCTTTTGGTGTCTGTTGCAAAGTTATGTTTTATTACTTGGTGTGGGGAACATTTCCCCTATGACTATTGCATTTAGTTTTCACTTTCAGCTTAGGAACTTATCAGTAATAATTAAACCAAACAAAAAATGAAGTGGCAAATGGTTAAGTGAATTGTCTATTGTTTTCCAACCACTGAAGCATTACAAATATTTTCCTTGCTTTTTTTGAGGAATAGTGTGATCTTTTACGGTTTATACACATGGGCATTATATTCTTTCATTAATGCATTGTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGGTATGCCCCTCCATCATTCTATGGACCTTTTATAGTTTAGAGTCGCAGTATCATTTTAAATTAATGTTCTTCTCTATCCATTTATTGTCTGCGTATTGTAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGATTCAAGTTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCTAAGATTCAATTTACTTTCACAGTTGAAGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCCAATTAAATCTATGGTGGGGATTATACTTGCATGGTATAAAGGACACCCCAATGAGTTCTTTGTATGAACATTGAATCTCAAAATCAATCATAGAACAATTGTTATGGTCAGATTTTCTGTTCTTTTTTAGATGAAGTAGTCAACCACTTTCATATGTGTGCAAGTTTTACGTGAAGGACACCAAAAGCCTTTGAATTGTAGCTCAAGTAGGTGAAATTTAAGGCATTGGA TGGATCGCCATTAGAGAATATTCTCGAGCATCTTTTTTTTCTTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAAGCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGATTCAAGTTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCTAAGATTCAATTTACTTTCACAGTTGAAGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCCAATTAAATCTATGGTGGGGATTATACTTGCATGGTATAAAGGACACCCCAATGAGTTCTTTGTATGAACATTGAATCTCAAAATCAATCATAGAACAATTGTTATGGTCAGATTTTCTGTTCTTTTTTAGATGAAGTAGTCAACCACTTTCATATGTGTGCAAGTTTTACGTGAAGGACACCAAAAGCCTTTGAATTGTAGCTCAAGTAGGTGAAATTTAAGGCATTGGA ATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGA
BLAST of CmoCh02G013160 vs. TrEMBL
Match: A0A0A0KK15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 7.5e-107 Identity = 202/244 (82.79%), Postives = 216/244 (88.52%), Query Frame = 1
BLAST of CmoCh02G013160 vs. TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 9.5e-86 Identity = 165/233 (70.82%), Postives = 193/233 (82.83%), Query Frame = 1
BLAST of CmoCh02G013160 vs. TrEMBL
Match: B9GG85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28270g PE=4 SV=2) HSP 1 Score: 318.5 bits (815), Expect = 6.8e-84 Identity = 156/223 (69.96%), Postives = 184/223 (82.51%), Query Frame = 1
BLAST of CmoCh02G013160 vs. TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 9.9e-83 Identity = 161/241 (66.80%), Postives = 193/241 (80.08%), Query Frame = 1
BLAST of CmoCh02G013160 vs. TrEMBL
Match: A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81 Identity = 161/241 (66.80%), Postives = 193/241 (80.08%), Query Frame = 1
BLAST of CmoCh02G013160 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein) HSP 1 Score: 252.7 bits (644), Expect = 2.3e-67 Identity = 138/245 (56.33%), Postives = 175/245 (71.43%), Query Frame = 1
BLAST of CmoCh02G013160 vs. TAIR10
Match: AT5G12310.1 (AT5G12310.1 RING/U-box superfamily protein) HSP 1 Score: 237.3 bits (604), Expect = 1.0e-62 Identity = 136/243 (55.97%), Postives = 164/243 (67.49%), Query Frame = 1
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|449444871|ref|XP_004140197.1| (PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus]) HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106 Identity = 202/244 (82.79%), Postives = 216/244 (88.52%), Query Frame = 1
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|778716917|ref|XP_011657615.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]) HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106 Identity = 202/244 (82.79%), Postives = 216/244 (88.52%), Query Frame = 1
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|659097505|ref|XP_008449663.1| (PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo]) HSP 1 Score: 392.1 bits (1006), Expect = 7.0e-106 Identity = 199/243 (81.89%), Postives = 213/243 (87.65%), Query Frame = 1
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo]) HSP 1 Score: 392.1 bits (1006), Expect = 7.0e-106 Identity = 199/243 (81.89%), Postives = 213/243 (87.65%), Query Frame = 1
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|595899827|ref|XP_007213836.1| (hypothetical protein PRUPE_ppa010547mg [Prunus persica]) HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85 Identity = 165/233 (70.82%), Postives = 193/233 (82.83%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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