Cucsa.327900 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.327900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	spiral1
Location	scaffold03159 : 203512 .. 205811 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGCTAGGTACGAGTACACCACTCTCTCCACTCTCATTTCTTCCTTCCTTCCCTCTTAACTCCCAGGTTCCCCTCAGATCCCATCGTCGCCGGAAGGTTTGCTCCTCAAATTCATTCCTTGTCTCTTAGATCTTCTCTTTATCTTTCTGTTTTCCTCTTTTTAATCCACAATCTACCTTTGTTTCCCCCCCcATTTTCTTCTTCCTTCATCATCTACCATTGTTTTATCGCATTCCTTCTCTAGATCTACTACTTGATTCATTCTCTTTGGATTTTCCTGTTTCTCCTTCCGGGTACCTCTCAATTGCTGAAACTATCAGATCTTGTTTCTTTCGCATCTTTGATTTTGTTCTTTTCTGACTGTGCTTAAGGGTTTTGCAGGATCTGTGGTATATGCCTACATTTTAACTGTTTCTTACTTTTTGGTCAAGTGATCGGTTTTTGAGATGGGTTTTTACGCTAGAACTTAGTACTCAGCTCAGCTGGGATATTCTTCTTGTGTTCCTGTGTGGGTTTTTtACTGTAAACAAaTTAAATCAAATCACACCACTGTATGGGATTAGTATAACTGGTTGTTTTGTTTTGAAATTGATGCTATTGTTAATGGCTTCATGTGTCTTGTGTTCCGTTTTTCAATGTCTTGTTTGTCTTGGTATAATCTTTTTGTTTGGAGATCTATTGCTCTTACTATATCTTCTTTAATTTCATCACGACAGCTTTAGGCCTTGTCAGTATCTTCTTCATTTAGGTTGGGATTTATTTATTTATTTATTCAGCTGGCAGTCTTTACCACAGAAACAGGTCTTGTGGCTAGTTTTTCCAATATATATATATTATACCATCGTAAAAGAATATTATTATTATCTCAGACCTAACTGTTGAAAGTATGAGTCGTTAGATACCAAAGTTAGAAAAACCCATGAACTGTTACGACTAAGGGAATTAACATGAAAACATGGATCAAGTGTGATGTTCAAACATCAAGTTTGATGTTTTATTATAGTAGAGGCTTGAGTTTTACATTTTAACTCGAGATTTCTTTGGATACTTGATAGGACTATTTGCAATATATGAGATCCTTCAGCCATCGATTTTCACTCATTTATGTTCTCAGTCTTCTGATCTTTATTATTATTCTTTTTCCTGGTTGTAAGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAACCGAAGTGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGTATAGCTACCCTTTATGAGTATTCTGCAATTTATTTGGTCTAATTTGACTGCTAGCATGTTGCCGATGATTGATACATATATAATCTTGGATTAGGGTCCATATTGCACCTATTTAGTTTAGCATACGATACGTCAATTGCAGTTTGCTTGGATTAGATGTTTACTGCACCTATTTATCTAGTCTCGTCCTCCTCTTTCTACCTATCTTTGAATTGTACGATCCAAGAGTAGTAGCCAAACGGGCATGTGCTAAAAGAAGATTGTACTGTAACTGATCTTTTGCCAAAATGGGACCATGATATACCTTGATATGATATAATCAAAAAGGGGATTATAGTGATTTATTAGCTTTGTTTGTGGATGGTGCAGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAACCTGCAAATCAGAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCGTGTCGAAGGGGCAATGTTTTTTTTtCTtCTTTTCTTCCATCTGAAACGATACTATGGCAGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTGATTCAGTCAAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTATCCGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAAACTCTCTTTTATCTTCATGGTCTTCTATTTCTATTCAGATTAGCTCCATTTCTTCAAACTCCAAATGACTTCTTAATCTAAAAGGCAGAAACA

mRNA sequence

GCGTGCTAGGTACGAGTACACCACTCTCTCCACTCTCATTTCTTCCTTCCTTCCCTCTTAACTCCCAGGTTCCCCTCAGATCCCATCGTCGCCGGAAGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAACCGAAGTGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAACCTGCAAATCAGAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCGTGTCGAAGGGGCAATGTTTTTTTTTCTTCTTTTCTTCCATCTGAAACGATACTATGGCAGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTGATTCAGTCAAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTATCCGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAAACTCTCTTTTATCTTCATGGTCTTCTATTTCTATTCAGATTAGCTCCATTTCTTCAAACTCCAAATGACTTCTTAATCTAAAAGGCAGAAACA

Coding sequence (CDS)

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Protein sequence

MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK*

Homology

[Close]

BLAST of Cucsa.327900 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-35
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP P SE   IS  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +++KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of Cucsa.327900 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-32
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A           + A+T S        A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN--------KTPAETESSAHAPPTQAAAANAV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of Cucsa.327900 vs. Swiss-Prot
Match: SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.2e-31
Identity = 76/116 (65.52%), Postives = 83/116 (71.55%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP-PSEAKTISKPAVSKPAATASPP- 63
           RG S+GGGQSSLGYLFG  +AP   A      AP P P+ A      AV+ PA   SP  
Sbjct: 3   RGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAA---AVAAPAEKPSPAK 62

Query: 64  ADISKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           AD +KQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 63  ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

[Close]

BLAST of Cucsa.327900 vs. Swiss-Prot
Match: SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.1e-30
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPP- 62
           GRGVSSGGGQSSLGYLFG G+   A   K     P   +E +T   P      A A+ P 
Sbjct: 4   GRGVSSGGGQSSLGYLFGGGETAPAAKAK-----PAAAAEKETTPAPVKKAAVAAAASPS 63

Query: 63  -ADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 64  AAEKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

[Close]

BLAST of Cucsa.327900 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.0e-30
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPA-VSKPAATASPP 62
           GRGVSSGGGQSSLGYLFG G+AP                  K+  KPA V KPA ++S  
Sbjct: 2   GRGVSSGGGQSSLGYLFGGGEAP------------------KSAEKPAPVQKPAPSSS-- 61

Query: 63  ADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLDYLF G
Sbjct: 62  AEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

[Close]

BLAST of Cucsa.327900 vs. TrEMBL
Match: A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.6e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of Cucsa.327900 vs. TrEMBL
Match: M5XNQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 61  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 120

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 121 PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 177

[Close]

BLAST of Cucsa.327900 vs. TrEMBL
Match: A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+AP A A         P +    +  P  SKPA   SPP 
Sbjct: 130 GRGVSSGGGQSSLGYLFGSGEAPKAAASS-------PQTAPAEVDNPPPSKPAVV-SPPV 189

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           D++KQIPAGIHS+SSNNY+RADGQNTGNF+TDRPSTKVH APGGGSSLDYLFGGAG
Sbjct: 190 DVTKQIPAGIHSTSSNNYMRADGQNTGNFLTDRPSTKVHNAPGGGSSLDYLFGGAG 237

[Close]

BLAST of Cucsa.327900 vs. TrEMBL
Match: W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRG SSGGGQSSLGYLFG G+AP     K    A  P +E + ++    SKP A    P 
Sbjct: 2   GRGNSSGGGQSSLGYLFGSGEAPKPATNK----AAAPTNEVRAVNDVPASKPTAAPPQPV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           D+SKQIPAGI+S+S+NNY+RADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG GG
Sbjct: 62  DVSKQIPAGINSTSTNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGPGG 114

[Close]

BLAST of Cucsa.327900 vs. TrEMBL
Match: A0A0D2W4F6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G094900 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-37
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+AP AG            S+A     PAVSKPA  A  P 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPKAGTNN---------SQAAPAEAPAVSKPAP-APEPV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           DISKQIPAGI+S S+NNY+RADGQNTGNF+TDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 62  DISKQIPAGINSISANNYMRADGQNTGNFLTDRPSTKVHSAPGGGSSLDYLFGGPGG 108

[Close]

BLAST of Cucsa.327900 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP P SE   IS  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +++KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of Cucsa.327900 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-33
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A           + A+T S        A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN--------KTPAETESSAHAPPTQAAAANAV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of Cucsa.327900 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-30
Identity = 74/121 (61.16%), Postives = 83/121 (68.60%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP-- 62
           GRG S GGGQSSL YLFG GDAP   APK      P P+E+     P V+   ATA    
Sbjct: 2   GRGNSCGGGQSSLDYLFG-GDAP---APKPVPAPRPAPTESNNGPAPPVTAVTATALTTA 61

Query: 63  -----PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 117
                PA+++KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF 
Sbjct: 62  TTSVEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFT 117

[Close]

BLAST of Cucsa.327900 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-24
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPAD 63
           RGV++G  +SSLGYLFG G   +A A   G       +   T +     +P  T +    
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTT---TTTTTTTDGTGGRPITTTTTTVT 64

Query: 64  ISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            +K+  AG+  S  NNY R++GQN GNF+TDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 65  DNKKTSAGVRGSP-NNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113

[Close]

BLAST of Cucsa.327900 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-22
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPAD 63
           RGV+SGGG+SSLGYLFG G++         +      +   T +  A  +P  T +    
Sbjct: 5   RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTT 64

Query: 64  ISK----QIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 116
             K    +  AG+  S  NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSL YLFG
Sbjct: 65  GDKNKTEENSAGVRGSP-NNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119

[Close]

BLAST of Cucsa.327900 vs. NCBI nr
Match: gi|449452849|ref|XP_004144171.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of Cucsa.327900 vs. NCBI nr
Match: gi|659089321|ref|XP_008445444.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP +E KT+SKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADI+KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of Cucsa.327900 vs. NCBI nr
Match: gi|645277571|ref|XP_008243833.1| (PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 61

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 62  PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 118

[Close]

BLAST of Cucsa.327900 vs. NCBI nr
Match: gi|596288440|ref|XP_007225937.1| (hypothetical protein PRUPE_ppa012233mg [Prunus persica])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 61  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 120

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 121 PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 177

[Close]

BLAST of Cucsa.327900 vs. NCBI nr
Match: gi|645277568|ref|XP_008243832.1| (PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 14  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 73

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 74  PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 130

The following BLAST results are available for this feature:

BLAST of Cucsa.327900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L1_ARATH	2.5e-35	66.38	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	5.7e-32	61.40	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SP1L1_ORYSJ	8.2e-31	65.52	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1	[more]
SP1L2_ORYSJ	4.1e-30	60.34	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1	[more]
SP1L3_ORYSJ	9.0e-30	62.61	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1	[more]

BLAST of Cucsa.327900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFN2_CUCSA	9.6e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1	[more]
M5XNQ4_PRUPE	2.0e-39	71.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1	[more]
A0A059D7D9_EUCGR	1.1e-37	70.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1	[more]
W9QNX4_9ROSA	2.4e-37	68.38	Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1	[more]
A0A0D2W4F6_GOSRA	4.1e-37	71.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G094900 PE=4 SV=1	[more]

BLAST of Cucsa.327900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	1.4e-36	66.38	SPIRAL1-like1	[more]
AT1G69230.1	3.2e-33	61.40	SPIRAL1-like2	[more]
AT2G03680.1	5.6e-30	61.16	spiral1	[more]
AT3G02180.1	6.0e-24	50.44	SPIRAL1-like3	[more]
AT5G15600.1	3.3e-22	48.28	SPIRAL1-like4	[more]

BLAST of Cucsa.327900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452849\|ref\|XP_004144171.1\|	1.4e-62	100.00	PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus]	[more]
gi\|659089321\|ref\|XP_008445444.1\|	2.2e-60	95.83	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]	[more]
gi\|645277571\|ref\|XP_008243833.1\|	2.8e-39	71.43	PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume]	[more]
gi\|596288440\|ref\|XP_007225937.1\|	2.8e-39	71.43	hypothetical protein PRUPE_ppa012233mg [Prunus persica]	[more]
gi\|645277568\|ref\|XP_008243832.1\|	2.8e-39	71.43	PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.327900.1	Cucsa.327900.1	mRNA
Cucsa.327900.3	Cucsa.327900.3	mRNA
Cucsa.327900.2	Cucsa.327900.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 3..116 score: 3.6
None	No IPR available	PANTHER	PTHR33403:SF1	PROTEIN SPIRAL1	coord: 3..116 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.327900	Cla022029	Watermelon (97103) v1	cgywmB593
Cucsa.327900	Csa6G366520	Cucumber (Chinese Long) v2	cgycuB466
Cucsa.327900	MELO3C011417	Melon (DHL92) v3.5.1	cgymeB539
Cucsa.327900	ClCG08G010450	Watermelon (Charleston Gray)	cgywcgB565
Cucsa.327900	CSPI06G19710	Wild cucumber (PI 183967)	cgycpiB492
Cucsa.327900	CmaCh05G004490	Cucurbita maxima (Rimu)	cgycmaB0909
Cucsa.327900	CmoCh05G004750	Cucurbita moschata (Rifu)	cgycmoB0907
Cucsa.327900	CmoCh12G000840	Cucurbita moschata (Rifu)	cgycmoB0904
Cucsa.327900	Lsi08G009000	Bottle gourd (USVL1VR-Ls)	cgylsiB535
Cucsa.327900	Cp4.1LG11g03950	Cucurbita pepo (Zucchini)	cgycpeB0863
Cucsa.327900	Cp4.1LG07g00840	Cucurbita pepo (Zucchini)	cgycpeB0866
Cucsa.327900	MELO3C011417.2	Melon (DHL92) v3.6.1	cgymedB539
Cucsa.327900	CsaV3_6G033710	Cucumber (Chinese Long) v3	cgycucB508
Cucsa.327900	Cla97C08G153310	Watermelon (97103) v2	cgywmbB569
Cucsa.327900	Bhi04G000919	Wax gourd	cgywgoB662
Cucsa.327900	Carg09264	Silver-seed gourd	carcgyB0175
Cucsa.327900	Carg20584	Silver-seed gourd	carcgyB0729

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.327900	Cucumber (Gy14) v1	cgycgyB066
Cucsa.327900	Cucurbita maxima (Rimu)	cgycmaB0906
Cucsa.327900	Melon (DHL92) v3.5.1	cgymeB538
Cucsa.327900	Watermelon (Charleston Gray)	cgywcgB564
Cucsa.327900	Watermelon (97103) v1	cgywmB595
Cucsa.327900	Cucumber (Chinese Long) v3	cgycucB507