CsaV3_6G033710 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G033710
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein SPIRAL1-like 1
Location	chr6 : 18608887 .. 18611332 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATTAAAAGTGTGTAAAAAATTAAAAAAGAAAGAAAAGAATAGAAAGTATATTATTTTAGTAATTAAATGATTTTTTTTTAAAAAAGGGAGAGTGTAATAAATAAATAATTGGAGTATCTTGGGAGACTGCGTGCTAGGTACGAGTACACCACTCTCTCCACTCTCATTTCTTCCTTCCTTCCCTCTTAACTCCCAGGTTCCCCTCAGATCCCATCGTCGCCGGAAGGTTTGCTCCTCAAATTCATTCCTTGTCTCTTAGATCTTCTCTTTATCTTTCTGTTTTCCTCTTTTTAATCCACAATCTACCTTTGTTTTCCCCCCCATTTTCTTCTTCCTTCATCATCTACCATTGTTTTATCGCATTCCTTCTCTAGATCTACTACTTGATTCATTCTCTTTGGATTTTCCTGTTTCTCCTTCCGGGTACCTCTCAATTGCTGAAACTATCAGATCTTGTTTCTTTCGCATCTTTGATTTTGTTCTTTTCTGACTGTGCTTAAGGGTTTTGCAGGATCTGTGGTATATGCCTACATTTTAACTGTTTCTTACTTTTTGGTCAAGTGATCGGTTTTTGAGATGGGTTTTTACGCTAGAACTTAGTACTCAGCTCAGCTGGGATATTCTTCTTGTGTTCCTGTGTGGGTTTTTTACTGTAAACAAATTAAATCAAATCACACCACTGTATGGGATTAGTATAACTGGTTGTTTTGTTTTGAAATTGATGCTATTGTTAATGGCTTCATGTGTCTTGTGTTCCGTTTTTCAATGTCTTGTTTGTCTTGGTATAATCTTTTTGTTTGGAGATCTATTGCTCTTACTATATCTTCTTTAATTTCATCACGACAGCTTTAGGCCTTGTCAGTATCTTCTTCATTTAGGTTGGGATTTATTTATTTATTTATTCAGCTGGCAGTCTTTACCACAGAAACAGGTCTTGTGGCTAGTTTTTCCAATATATATATATTATACCATCGTAAAAGAATATTATTATTATCTCAGACCTAACTGTTGAAAGTATGAGTCGTTAGATACCAAAGTTAGAAAAACCCATGAACTGTTACGACTAAGGGAATTAACATGAAAACATGGATCAAGTGTGATGTTCAAACATCAAGTTTGATGTTTTATTATAGTAGAGGCTTGAGTTTTACATTTTAACTCGAGATTTCTTTGGATACTTGATAGGACTATTTGCAATATATGAGATCCTTCAGCCATCGATTTTCACTCATTTATGTTCTCAGTCTTCTGATCTTTATTATTATTCTTTTTCCTGGTTGTAAGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAACCGAAGTGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGTATAGCTACCCTTTATGAGTATTCTGCAATTTATTTGGTCTAATTTGACTGCTAGCATGTTGCCGATGATTGATACATATATAATCTTGGATTAGGGTCCATATTGCACCTATTTAGTTTAGCATACGATACGTCAATTGCAGTTTGCTTGGATTAGATGTTTACTGCACCTATTTATCTAGTCTCGTCCTCCTCTTTCTACCTATCTTTGAATTGTACGATCCAAGAGTAGTAGCCAAACGGGCATGTGCTAAAAGAAGATTGTACTGTAACTGATCTTTTGCCAAAATGGGACCATGATATACCTTGATATGATATAATCAAAAAGGGGATTATAGTGATTTATTAGCTTTGTTTGTGGATGGTGCAGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAACCTGCAAATCAGAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCGTGTCGAAGGGGCAATGTTTTTTTTTCTTCTTTTCTTCCATCTGAAACGATACTATGGCAGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTGATTCAGTCAAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTATCCGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAAACTCTCTTTTATCTTCATGGTCTTCTATTTCTATTCAGATTAGCTCCATTTCTTCAAACTCCAAATGACTTCTTAATCTAAAAGGCAGAAACATAGATTGAACTTTTC

mRNA sequence

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Coding sequence (CDS)

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Protein sequence

MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK

Homology

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BLAST of CsaV3_6G033710 vs. NCBI nr
Match: XP_004144171.1 (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus] >KGN47654.1 hypothetical protein Csa_6G366520 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 9.9e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

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BLAST of CsaV3_6G033710 vs. NCBI nr
Match: XP_008445444.1 (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445447.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.6e-54
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP +E KT+SKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADI+KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

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BLAST of CsaV3_6G033710 vs. NCBI nr
Match: XP_023537697.1 (protein SPIRAL1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 101/128 (78.91%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG----------RQAPPPPSEAKTISKPAVS 62
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                  EAK +SKPA S
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEAKPVSKPAAS 61

Query: 63  KPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
           KPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY
Sbjct: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121

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BLAST of CsaV3_6G033710 vs. NCBI nr
Match: XP_022951957.1 (protein SPIRAL1-like 1 [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 101/130 (77.69%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG------------RQAPPPPSEAKTISKPA 62
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                    EAK +SKPA
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXXXEAKPVSKPA 61

Query: 63  VSKPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 121
            SKPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL
Sbjct: 62  ASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 121

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BLAST of CsaV3_6G033710 vs. NCBI nr
Match: XP_023002715.1 (protein SPIRAL1-like 1 [Cucurbita maxima])

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 99/128 (77.34%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG----------RQAPPPPSEAKTISKPAVS 62
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                  E K +SKPA  
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKHVSKPAAF 61

Query: 63  KPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
           KPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY
Sbjct: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121

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BLAST of CsaV3_6G033710 vs. TAIR10
Match: AT1G26355.1 (SPIRAL1-like1)

HSP 1 Score: 134.0 bits (336), Expect = 6.0e-32
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP P SE   IS  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +++KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

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BLAST of CsaV3_6G033710 vs. TAIR10
Match: AT1G69230.1 (SPIRAL1-like2)

HSP 1 Score: 124.0 bits (310), Expect = 6.2e-29
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A           + A+T S        A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN--------KTPAETESSAHAPPTQAAAANAV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

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BLAST of CsaV3_6G033710 vs. TAIR10
Match: AT2G03680.1 (spiral1)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-17
Identity = 62/118 (52.54%), Postives = 68/118 (57.63%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATAS--- 62
           GRG S GGGQSSL YLFG GDA                                      
Sbjct: 2   GRGNSCGGGQSSLDYLFG-GDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 63  -PPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
             PA+++KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF G
Sbjct: 62  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTG 117

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BLAST of CsaV3_6G033710 vs. TAIR10
Match: AT4G23496.1 (SPIRAL1-like5)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-15
Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 4   RGVSSGGGQSSLGYLFG-DGDAPNAGAPK-GGRQAPPPPSEAKTISKPAVSKPAATASPP 63
           RG S GGGQSSLGYLFG D + P   AP    + APP   ++      A  KP       
Sbjct: 3   RGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEEDHEADQKP------- 62

Query: 64  ADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 116
                         S+NNY R  GQN+GNF+TDRP+TKV + PGGGSSL YLFG
Sbjct: 63  ------------KISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFG 97

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BLAST of CsaV3_6G033710 vs. TAIR10
Match: AT5G15600.1 (SPIRAL1-like4)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-15
Identity = 53/115 (46.09%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 4   RGVSSGGGQSSLGYLFGDGDA---PNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 63
           RGV+SGGG+SSLGYLFG G++   PN    K G                           
Sbjct: 5   RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTXXXXXXXXXXXXXXXXXXXXXXXXX 64

Query: 64  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 116
                    +     S NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSL YLFG
Sbjct: 65  XXXXXXXXXSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119

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BLAST of CsaV3_6G033710 vs. Swiss-Prot
Match: sp|B3H4F1|SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP P SE   IS  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +++KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

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BLAST of CsaV3_6G033710 vs. Swiss-Prot
Match: sp|Q9LE54|SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A           + A+T S        A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN--------KTPAETESSAHAPPTQAAAANAV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

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BLAST of CsaV3_6G033710 vs. Swiss-Prot
Match: sp|Q2QQ99|SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-23
Identity = 64/114 (56.14%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+AP +             S A+ +                
Sbjct: 2   GRGVSSGGGQSSLGYLFGGGEAPKSXXXXXXXXXXXXXSSAEKL---------------- 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
              K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLDYLF G
Sbjct: 62  ---KEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

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BLAST of CsaV3_6G033710 vs. Swiss-Prot
Match: sp|Q7Y1L9|SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18
Identity = 62/114 (54.39%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPAD 63
           RG S+GGGQSSLGYLFG  +AP                                      
Sbjct: 3   RGGSAGGGQSSLGYLFGGNEAPKP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  ISKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            +KQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 63  XTKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

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BLAST of CsaV3_6G033710 vs. Swiss-Prot
Match: sp|Q2R0W8|SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-17
Identity = 59/114 (51.75%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG                                          
Sbjct: 4   GRGVSSGGGQSSLGYLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK- 63

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
              K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 64  --MKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

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BLAST of CsaV3_6G033710 vs. TrEMBL
Match: tr|A0A0A0KFN2|A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366520 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.6e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

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BLAST of CsaV3_6G033710 vs. TrEMBL
Match: tr|A0A1S3BCR3|A0A1S3BCR3_CUCME (protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP +E KT+SKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADI+KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

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BLAST of CsaV3_6G033710 vs. TrEMBL
Match: tr|A0A059D7D9|A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03146 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.6e-33
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+AP A A         P +    +  P  SKP A  SPP 
Sbjct: 130 GRGVSSGGGQSSLGYLFGSGEAPKAAASS-------PQTAPAEVDNPXXSKP-AVVSPPV 189

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           D++KQIPAGIHS+SSNNY+RADGQNTGNF+TDRPSTKVH APGGGSSLDYLFGGAG
Sbjct: 190 DVTKQIPAGIHSTSSNNYMRADGQNTGNFLTDRPSTKVHNAPGGGSSLDYLFGGAG 237

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BLAST of CsaV3_6G033710 vs. TrEMBL
Match: tr|A0A2P4JT90|A0A2P4JT90_QUESU (Protein spiral1-like 1 OS=Quercus suber OX=58331 GN=CFP56_37032 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.6e-32
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGR-QAPPPPSEAKTISKPAVSKPAATASPP 62
           GRGVSSGGGQSSLGYLFG G+AP   APK  +      PSEA  ++     KP ATASPP
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAP---APKPVQTNVEAAPSEAPAVNNSPAPKP-ATASPP 61

Query: 63  ADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG--AGG 120
            D++KQIPAGIHS+S+NNY+RADGQNTGNFITDRPSTKVH+APGGGSSL YLFGG  AGG
Sbjct: 62  VDVTKQIPAGIHSTSTNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLGYLFGGGPAGG 117

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BLAST of CsaV3_6G033710 vs. TrEMBL
Match: tr|W9QNX4|W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026438 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.5e-32
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRG SSGGGQSSLGYLFG G+AP     K    A  P +E + ++    SKP A    P 
Sbjct: 2   GRGNSSGGGQSSLGYLFGSGEAPKPATNK----AAAPTNEVRAVNDVPASKPTAAPPQPV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           D+SKQIPAGI+S+S+NNY+RADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG GG
Sbjct: 62  DVSKQIPAGINSTSTNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGPGG 114

The following BLAST results are available for this feature:

BLAST of CsaV3_6G033710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144171.1	9.9e-57	100.00	PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 PREDICTED: p...	[more]
XP_008445444.1	1.6e-54	95.83	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: prot...	[more]
XP_023537697.1	1.4e-42	78.91	protein SPIRAL1-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022951957.1	2.4e-42	77.69	protein SPIRAL1-like 1 [Cucurbita moschata]	[more]
XP_023002715.1	2.6e-41	77.34	protein SPIRAL1-like 1 [Cucurbita maxima]	[more]

BLAST of CsaV3_6G033710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	6.0e-32	66.38	SPIRAL1-like1	[more]
AT1G69230.1	6.2e-29	61.40	SPIRAL1-like2	[more]
AT2G03680.1	1.1e-17	52.54	spiral1	[more]
AT4G23496.1	6.7e-15	47.37	SPIRAL1-like5	[more]
AT5G15600.1	6.7e-15	46.09	SPIRAL1-like4	[more]

BLAST of CsaV3_6G033710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B3H4F1\|SP1L1_ARATH	1.1e-30	66.38	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
sp\|Q9LE54\|SP1L2_ARATH	1.1e-27	61.40	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
sp\|Q2QQ99\|SP1L3_ORYSJ	3.7e-23	56.14	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]
sp\|Q7Y1L9\|SP1L1_ORYSJ	2.8e-18	54.39	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 ...	[more]
sp\|Q2R0W8\|SP1L2_ORYSJ	5.2e-17	51.75	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 ...	[more]

BLAST of CsaV3_6G033710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFN2\|A0A0A0KFN2_CUCSA	6.6e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366520 PE=4 SV=1	[more]
tr\|A0A1S3BCR3\|A0A1S3BCR3_CUCME	1.0e-54	95.83	protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=4 SV=1	[more]
tr\|A0A059D7D9\|A0A059D7D9_EUCGR	6.6e-33	70.69	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03146 PE=4 SV...	[more]
tr\|A0A2P4JT90\|A0A2P4JT90_QUESU	5.6e-32	71.67	Protein spiral1-like 1 OS=Quercus suber OX=58331 GN=CFP56_37032 PE=4 SV=1	[more]
tr\|W9QNX4\|W9QNX4_9ROSA	9.5e-32	68.38	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026438 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G033710.1	CsaV3_6G033710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..95
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 3..117
None	No IPR available	PANTHER	PTHR33403:SF11	PROTEIN SPIRAL1-RELATED	coord: 3..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G033710	CSPI06G19710	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G033710	Cucsa.327900	Cucumber (Gy14) v1	cgycucB508
CsaV3_6G033710	CmaCh05G004490	Cucurbita maxima (Rimu)	cmacucB0950
CsaV3_6G033710	CmoCh12G000840	Cucurbita moschata (Rifu)	cmocucB0208
CsaV3_6G033710	CmoCh05G004750	Cucurbita moschata (Rifu)	cmocucB0937
CsaV3_6G033710	Cp4.1LG07g00840	Cucurbita pepo (Zucchini)	cpecucB1031
CsaV3_6G033710	Cp4.1LG11g03950	Cucurbita pepo (Zucchini)	cpecucB0131
CsaV3_6G033710	Carg09264	Silver-seed gourd	carcucB0166
CsaV3_6G033710	Carg20584	Silver-seed gourd	carcucB0685
CsaV3_6G033710	Cla022029	Watermelon (97103) v1	cucwmB481
CsaV3_6G033710	MELO3C011417	Melon (DHL92) v3.5.1	cucmeB475
CsaV3_6G033710	ClCG08G010450	Watermelon (Charleston Gray)	cucwcgB514
CsaV3_6G033710	Lsi08G009000	Bottle gourd (USVL1VR-Ls)	cuclsiB500
CsaV3_6G033710	MELO3C011417.2	Melon (DHL92) v3.6.1	cucmedB465
CsaV3_6G033710	Cla97C08G153310	Watermelon (97103) v2	cucwmbB505
CsaV3_6G033710	Bhi04G000919	Wax gourd	cucwgoB594

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G033710	Cucumber (Chinese Long) v3	cuccucB047
CsaV3_6G033710	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G033710	Cucurbita maxima (Rimu)	cmacucB0220
CsaV3_6G033710	Wax gourd	cucwgoB660