ClCG08G010450 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G010450
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	SPIRAL1-like1 LENGTH=113
Location	CG_Chr08 : 23148567 .. 23151097 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTATCTTCCAGACTGCGTGCTAGGTACGAGTACACCAGCCCACTCATTTCTTCGTTCCCTCTTGAACTCTGAAGTTCGCCTCAGATCCGATCGTCGCCGGAAGGTTTGCTCCAAATTCATACCCTAATTTCTCTCAGATCTTCTCTTCCTCCTTCTGATTTCTACGTTCTAATTGCTCATTCATCTTTTCGCTCTCGTTGAATCCTGAATGTACGATTGTTTTTAGCTTGATTTTCCTTGCTTTCTCAATGATGTACGATTGTTTATTGCGTTTCATTCGCATTCCTTGCCTAGATCTACTACTTGCTTCTCTTTTTTTTACTGCCGGATTGTGGTGTTTCTCCGTCGGGATTCCCCTTACCCTCTTCTACACAATTGCCTGCAATTATCAGATCTTGTTTATGCATCGTTGGTAGGAGGGTTTGTTTGGCATGTTTGTTTTTGTTAATTCCTGAGCGTGCTTGTGTTTCTTGGTATGATGCTACCAAAGGGTTTTACAGGATCTACGCGGTATATGCCTACATTTTAACTGTTTCTTACTTTTAGATGAAATGATCGGATTTTGAGTTGGATTTTTAGGGTAGAACTTAGAGGTCAGCTGGAATATTCTTCTTGCGTTCCTGTGTCAGTCTTTGACAATAAATAAATCAAATCACTATAGTAGATTAACACAACTGGTAGTCGTGTTTTGAAATTGATTCTATTGCTAATGGCTTCATGTCTTATGTTCCGTGTTTCAGACTTTCAGTGTCTTGGAGATCTGTTGCTCTTAACATATCCTCTTTAGAACCTACCTTTGCAACTTTCTCTTAACTGTGTAATCTAGGTCTTGTTAGTATCTTCTTGATTTAGGTTGGGATTTATTTATTTAGATGACAATCTTTACCACAGAAATAGGTCTAGTGGCTAATTTGTTCAAAAGAAGTATATATATTATATTGTGTTACTATTTCGTTTTCACCCGTAAAAAAAAAAAAAAAAATTATTCTTACCTCAAGCCTAACTGTTGAAGTTATGCGTTGTTAGATACTAAAGTTAGAAAAATCATTGAGCGGTTACAACTAAGGGAATTAATATGAAAATATGGATTGAGTGTGATGTTCAAACATTTTAACTCGAGATTTAAAATTTTCTTTTGATATTCGATAAGAGTATATGCAATATCCAAGTTGTAAGCATGCTTTTGAGATTCTTCAGCCATCGATATTCACCATTTATGTTCCGAGTCTTTTGACCTTTATTATTATCCTGTTTCCGTTTCTTCTGGTTGGAAGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAATCAAAGAGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGTCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGAAGCTCCGAACACAGGTGCACCTAAAGGTGGCCGCCAAGCACCGCCACCTTCAAATGAAGGGAAGACTGTATCCAAACCAGCAGTGACCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGTTACCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGTATGGCTCCCTTTTATGATTATTGCAGGTCTAATTTGACTGCTAACGCCCCCCACCCCAAACACAGGAAAAAAGGAAAATAAATATATAATCTTGGATTAGATCTATATTGCACCTATCTAATTTAGTATTCGATACGACAAATACAGTTCGGTTGGATTAGATGTGTATTGCACCTATTTATCTTGTCCCATCTTCCTCTTTCCTGAACCATCTTTGAATTGTTGAAGACATTGCCCACCAGTGACTTGACTTTTGACTATTTTCTGGACTGGCAATCAAAGATGTTTGCATCTCTTTGACTTGAGTCGTTGGAATTGTGAATTAAACCTCCTATCTCTTCGGTGGAAGATCATGCCAATTACTAAGTTCACTTTGGCCATTGACTTGTTTTACATATATGAGGTCTTTTTAACTTCACAGAGAAATAATGATCCAACAGCTCCCAAACAGCGGGCATGTGCAAATGAGGATTGTAACTGATCTTTTGCCAAACATGGCACCTTGATATGATGCATCAAAAAGGAGATTACAGTGATTAATTAGTTTTGTTTGTGGATGGTGCAGGATCGGCCTTCAACCAAGGTCCACGCCGCCCCGGGTGGCGGATCTTCTCTGGATTATCTGTTTGGCGGTGCTGGTGGAAAATGAAACCTGCAAATCATAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCATGTCGAAGGGGCAATGTTTCTTTTTTCTTCCATCTGAAATGATACTATGGCGGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTTATTCGGTCAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTGTCTGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAACTTTCTCTTTTACTA

mRNA sequence

CGAGTATCTTCCAGACTGCGTGCTAGGTACGAGTACACCAGCCCACTCATTTCTTCGTTCCCTCTTGAACTCTGAAGTTCGCCTCAGATCCGATCGTCGCCGGAAGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAATCAAAGAGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGTCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGAAGCTCCGAACACAGGTGCACCTAAAGGTGGCCGCCAAGCACCGCCACCTTCAAATGAAGGGAAGACTGTATCCAAACCAGCAGTGACCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGTTACCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCCGCCCCGGGTGGCGGATCTTCTCTGGATTATCTGTTTGGCGGTGCTGGTGGAAAATGAAACCTGCAAATCATAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCATGTCGAAGGGGCAATGTTTCTTTTTTCTTCCATCTGAAATGATACTATGGCGGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTTATTCGGTCAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTGTCTGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAACTTTCTCTTTTACTA

Coding sequence (CDS)

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGTCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGAAGCTCCGAACACAGGTGCACCTAAAGGTGGCCGCCAAGCACCGCCACCTTCAAATGAAGGGAAGACTGTATCCAAACCAGCAGTGACCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGTTACCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCCGCCCCGGGTGGCGGATCTTCTCTGGATTATCTGTTTGGCGGTGCTGGTGGAAAATGA

Protein sequence

MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK

Homology

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BLAST of ClCG08G010450 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-36
Identity = 79/116 (68.10%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRGVS GGGQSSLGYLFG GEAP          AP PS+E   +S  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of ClCG08G010450 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-32
Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG GEAP   A        P   E    + P      A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN----KTPAETESSAHAPPT----QAAAANAV 61

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

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BLAST of ClCG08G010450 vs. Swiss-Prot
Match: SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 76/115 (66.09%), Postives = 79/115 (68.70%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPP-A 63
           RG S+GGGQSSLGYLFG  EAP   A      AP P+      +  AV  PA   SP  A
Sbjct: 3   RGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAA--AVAAPAEKPSPAKA 62

Query: 64  DVTKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D TKQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 63  DATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

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BLAST of ClCG08G010450 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-30
Identity = 73/115 (63.48%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPA-VTKPAATASPP 62
           GRGVSSGGGQSSLGYLFG GEAP                  K+  KPA V KPA ++S  
Sbjct: 2   GRGVSSGGGQSSLGYLFGGGEAP------------------KSAEKPAPVQKPAPSSS-- 61

Query: 63  ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLDYLF G
Sbjct: 62  AEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

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BLAST of ClCG08G010450 vs. Swiss-Prot
Match: SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.9e-30
Identity = 70/116 (60.34%), Postives = 76/116 (65.52%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPP- 62
           GRGVSSGGGQSSLGYLFG GE       K     P  + E +T   P      A A+ P 
Sbjct: 4   GRGVSSGGGQSSLGYLFGGGETAPAAKAK-----PAAAAEKETTPAPVKKAAVAAAASPS 63

Query: 63  -ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 64  AAEKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

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BLAST of ClCG08G010450 vs. TrEMBL
Match: A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-59
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPP +E KT+SKPAV+KPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD++KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

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BLAST of ClCG08G010450 vs. TrEMBL
Match: M5XNQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG GEAP   A     QA P  NEG+ V+    +KP A   A  
Sbjct: 61  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 120

Query: 63  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P D+TKQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 121 PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 177

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BLAST of ClCG08G010450 vs. TrEMBL
Match: A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.2e-38
Identity = 85/116 (73.28%), Postives = 89/116 (76.72%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG GEAP   A     Q  P   +    SKPAV       SPP 
Sbjct: 130 GRGVSSGGGQSSLGYLFGSGEAPKAAA--SSPQTAPAEVDNPPPSKPAVV------SPPV 189

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           DVTKQIPAGIHS+SSNNY+RADGQNTGNF+TDRPSTKVH APGGGSSLDYLFGGAG
Sbjct: 190 DVTKQIPAGIHSTSSNNYMRADGQNTGNFLTDRPSTKVHNAPGGGSSLDYLFGGAG 237

[Close]

BLAST of ClCG08G010450 vs. TrEMBL
Match: W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRG SSGGGQSSLGYLFG GEAP     K    A  P+NE + V+    +KP A    P 
Sbjct: 2   GRGNSSGGGQSSLGYLFGSGEAPKPATNK----AAAPTNEVRAVNDVPASKPTAAPPQPV 61

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           DV+KQIPAGI+S+S+NNY+RADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG GG
Sbjct: 62  DVSKQIPAGINSTSTNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGPGG 114

[Close]

BLAST of ClCG08G010450 vs. TrEMBL
Match: A0A061E9M7_THECC (T1K7.26 protein OS=Theobroma cacao GN=TCM_011514 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-36
Identity = 85/117 (72.65%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG GEAP  G  K   QA P   E   VSK A     A A  P 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPKPGTNKP--QAAP--TEAPAVSKSAPAPAPAPAPEPV 61

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           D+TKQ PAGI+S+S+NNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL YLFGGA G
Sbjct: 62  DITKQTPAGINSTSTNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGAPG 114

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BLAST of ClCG08G010450 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-37
Identity = 79/116 (68.10%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRGVS GGGQSSLGYLFG GEAP          AP PS+E   +S  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of ClCG08G010450 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-33
Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG GEAP   A        P   E    + P      A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN----KTPAETESSAHAPPT----QAAAANAV 61

Query: 63  DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of ClCG08G010450 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-30
Identity = 73/118 (61.86%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP-- 62
           GRG S GGGQSSL YLFG G+AP        R AP  SN G      AVT  A T +   
Sbjct: 2   GRGNSCGGGQSSLDYLFG-GDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 61

Query: 63  --PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
             PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF G
Sbjct: 62  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTG 117

[Close]

BLAST of ClCG08G010450 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 56/113 (49.56%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPAD 63
           RGV++G  +SSLGYLFG G+  +  A   G      +    T +     +P  T +    
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTT---TTTDGTGGRPITTTTTTVT 64

Query: 64  VTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
             K+  AG+  S  NNY R++GQN GNF+TDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 65  DNKKTSAGVRGSP-NNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113

[Close]

BLAST of ClCG08G010450 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 104.4 bits (259), Expect = 5.1e-23
Identity = 61/119 (51.26%), Postives = 73/119 (61.34%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGEA---PNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP 63
           RGV+SGGG+SSLGYLFG GE+   PN    K G      +    T +  A  +P  T + 
Sbjct: 5   RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTT---TTTDGAGGRPKTTTTT 64

Query: 64  PA----DVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 116
                 + T++  AG+  S  NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSL YLFG
Sbjct: 65  TTTGDKNKTEENSAGVRGSP-NNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119

[Close]

BLAST of ClCG08G010450 vs. NCBI nr
Match: gi|659089321|ref|XP_008445444.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.0e-61
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPPSNEGKTVSKPAV+KPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of ClCG08G010450 vs. NCBI nr
Match: gi|449452849|ref|XP_004144171.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.4e-59
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPP +E KT+SKPAV+KPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD++KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of ClCG08G010450 vs. NCBI nr
Match: gi|645277568|ref|XP_008243832.1| (PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume])

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG GEAP   A     QA P  NEG+ V+    +KP A   A  
Sbjct: 14  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 73

Query: 63  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P D+TKQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 74  PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 130

[Close]

BLAST of ClCG08G010450 vs. NCBI nr
Match: gi|596288440|ref|XP_007225937.1| (hypothetical protein PRUPE_ppa012233mg [Prunus persica])

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG GEAP   A     QA P  NEG+ V+    +KP A   A  
Sbjct: 61  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 120

Query: 63  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P D+TKQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 121 PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 177

[Close]

BLAST of ClCG08G010450 vs. NCBI nr
Match: gi|645277571|ref|XP_008243833.1| (PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume])

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG GEAP   A     QA P  NEG+ V+    +KP A   A  
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 61

Query: 63  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P D+TKQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 62  PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 118

The following BLAST results are available for this feature:

BLAST of ClCG08G010450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L1_ARATH	3.8e-36	68.10	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	3.3e-32	62.28	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SP1L1_ORYSJ	1.6e-31	66.09	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1	[more]
SP1L3_ORYSJ	2.4e-30	63.48	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1	[more]
SP1L2_ORYSJ	6.9e-30	60.34	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1	[more]

BLAST of ClCG08G010450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFN2_CUCSA	3.8e-59	92.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1	[more]
M5XNQ4_PRUPE	3.0e-40	73.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1	[more]
A0A059D7D9_EUCGR	6.2e-38	73.28	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1	[more]
W9QNX4_9ROSA	1.1e-37	70.09	Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1	[more]
A0A061E9M7_THECC	1.5e-36	72.65	T1K7.26 protein OS=Theobroma cacao GN=TCM_011514 PE=4 SV=1	[more]

BLAST of ClCG08G010450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	2.1e-37	68.10	SPIRAL1-like1	[more]
AT1G69230.1	1.9e-33	62.28	SPIRAL1-like2	[more]
AT2G03680.1	1.9e-30	61.86	spiral1	[more]
AT3G02180.1	1.7e-23	49.56	SPIRAL1-like3	[more]
AT5G15600.1	5.1e-23	51.26	SPIRAL1-like4	[more]

BLAST of ClCG08G010450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089321\|ref\|XP_008445444.1\|	2.0e-61	96.67	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]	[more]
gi\|449452849\|ref\|XP_004144171.1\|	5.4e-59	92.50	PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus]	[more]
gi\|645277568\|ref\|XP_008243832.1\|	4.3e-40	73.11	PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume]	[more]
gi\|596288440\|ref\|XP_007225937.1\|	4.3e-40	73.11	hypothetical protein PRUPE_ppa012233mg [Prunus persica]	[more]
gi\|645277571\|ref\|XP_008243833.1\|	4.3e-40	73.11	PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051211	anisotropic cell growth
biological_process	GO:0071472	cellular response to salt stress
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0009826	unidimensional cell growth
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0010005	cortical microtubule, transverse to long axis
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0005874	microtubule
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0009574	preprophase band
cellular_component	GO:0005819	spindle
cellular_component	GO:0005876	spindle microtubule
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G010450.1	ClCG08G010450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 3..116 score: 6.7
None	No IPR available	PANTHER	PTHR33403:SF1	PROTEIN SPIRAL1	coord: 3..116 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G010450	Csa6G366520	Cucumber (Chinese Long) v2	cuwcgB496
ClCG08G010450	MELO3C011417	Melon (DHL92) v3.5.1	mewcgB296
ClCG08G010450	Cla022029	Watermelon (97103) v1	wcgwmB400
ClCG08G010450	Cla97C08G153310	Watermelon (97103) v2	wcgwmbB336
ClCG08G010450	Bhi04G000919	Wax gourd	wcgwgoB615
ClCG08G010450	CSPI06G19710	Wild cucumber (PI 183967)	cpiwcgB522
ClCG08G010450	Cucsa.327900	Cucumber (Gy14) v1	cgywcgB565
ClCG08G010450	CmaCh05G004490	Cucurbita maxima (Rimu)	cmawcgB709
ClCG08G010450	CmoCh05G004750	Cucurbita moschata (Rifu)	cmowcgB713
ClCG08G010450	CmoCh12G000840	Cucurbita moschata (Rifu)	cmowcgB162
ClCG08G010450	Lsi08G009000	Bottle gourd (USVL1VR-Ls)	lsiwcgB438
ClCG08G010450	Cp4.1LG07g00840	Cucurbita pepo (Zucchini)	cpewcgB749
ClCG08G010450	Cp4.1LG11g03950	Cucurbita pepo (Zucchini)	cpewcgB122
ClCG08G010450	MELO3C011417.2	Melon (DHL92) v3.6.1	medwcgB289
ClCG08G010450	Carg20584	Silver-seed gourd	carwcgB0633
ClCG08G010450	Carg09264	Silver-seed gourd	carwcgB0138
ClCG08G010450	CsaV3_6G033710	Cucumber (Chinese Long) v3	cucwcgB514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G010450	Cucumber (Gy14) v2	cgybwcgB454
ClCG08G010450	Silver-seed gourd	carwcgB0101
ClCG08G010450	Cucumber (Chinese Long) v3	cucwcgB099
ClCG08G010450	Watermelon (97103) v2	wcgwmbB325
ClCG08G010450	Wax gourd	wcgwgoB645
ClCG08G010450	Watermelon (Charleston Gray)	wcgwcgB152
ClCG08G010450	Cucurbita maxima (Rimu)	cmawcgB170
ClCG08G010450	Cucurbita moschata (Rifu)	cmowcgB372
ClCG08G010450	Wild cucumber (PI 183967)	cpiwcgB092
ClCG08G010450	Cucurbita pepo (Zucchini)	cpewcgB053
ClCG08G010450	Cucumber (Gy14) v2	cgybwcgB087