Carg20584 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20584
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein SPIRAL1-like 1
Location	Cucurbita_argyrosperma_scaffold_113 : 451703 .. 453415 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTTTCTTCTGGTTGGAAGGCAAGCTTCTGAGTTGTGACATTTGAAAGAAATCAAAGAGCCATGGGCCGTGGAGTTAGCAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGTGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCGCCAGCGCCAGCGCCAGCACCAGCACCACGTTCTAATGAAGGAAAACCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCGAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGTATGGCTACATTTAGGATTATTCTGCAATTGATCTTGTCTTACCTAACTACTAGCATGTTGTTGATAACTGCAAGAGAAGTAATTTTGTTTCAGTTTAACACGTTTCAAATACAGTTTGTTTGGTCTATCAACGAATCTTTCTATCCAATCTAGACGATACGATGGTCAACTAACCTTACCACTCACTTTCCTGTGTGCCCTAATGAGTGTGACATTTGACATGATGTGTCATTCTGTCCTTAAACATTGCAAATACATACTGAATATTTTGAGGAGTATGACATAGTGCTTATCCTGAGAAAAAGAATGTGTGACCATTCAGTTAGGTGCGATGTTAAAATGTCAATATATGGGAGCAAACAAGGAAAATGTATTACTTGGATTTGGATGTAAGTAATTACTTTTGGACCACAGAATTATGTCACAGTCATGTCTAGATAATAAGAGTATTGTGCAGCCGCTACGATAACCCACTTGCTCATCTTTCTGTTAATCACATTTTAGGCTGTTGTTTCAAATTCTTCCATTTTCCTGTCCCATCTTTGAATTGTTGAAGACATCATCATATCCATGACTTATCTTCATGATTATTTTCTCAAATTGCACTCAAGGACGTCCACATCTCTTCAGCTTGTTTTACGCATATGTGGTCTTATAACCCCACACAGAGGAATAATTGTCCAAAATCACCCAATCTAGGCCAGACACAAAAGAGGAAGAAAGCTTTGTTACCCTGATATGATAACTACTGCAAAAAGAGCATCCTGGCGAATTTGTTTGAAACCAACCCCCCCTATAGAGTGATTGATCGGCTTTCTTTTGTGGGTGCAGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAAGCTACCAAATCATAATTAAATAGAGCCTATTTGACTATCCAATTTATGTGAATTTTATATGATGTTGAAGGGCAATGTTTTTCGATCTGAAATATGATACTATGGGGCGGGACGATAACGATATGCTTTATGATGTGTAGATGCTATGGTTGCTGCTGCTCTGTTGTTGGGTTTTATTCAATCAAAATTTTTATTTTGGGTTCATGAAAAGCTGTTGTGGAGCTGTCTATGTCTGTCAAGGGATCTTTCTTACAAGTAATGCACAACTTTCTCTTTTGCTTTGCCCTTATGGTCTGTGTTTACTCAGATTATGATCACATTTTGATTGAAGGCCACACCTTTTGAATACTATGGCTACTGAAAAATGGGTCCTTTCCTTCTGTGATTTCTATTTCATCAAATTCTTGTTGATTTGGATGGGTAAC

mRNA sequence

TCCGTTTCTTCTGGTTGGAAGGCAAGCTTCTGAGTTGTGACATTTGAAAGAAATCAAAGAGCCATGGGCCGTGGAGTTAGCAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGTGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCGCCAGCGCCAGCGCCAGCACCAGCACCACGTTCTAATGAAGGAAAACCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCGAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAAGCTACCAAATCATAATTAAATAGAGCCTATTTGACTATCCAATTTATGTGAATTTTATATGATGTTGAAGGGCAATGTTTTTCGATCTGAAATATGATACTATGGGGCGGGACGATAACGATATGCTTTATGATGTGTAGATGCTATGGTTGCTGCTGCTCTGTTGTTGGGTTTTATTCAATCAAAATTTTTATTTTGGGTTCATGAAAAGCTGTTGTGGAGCTGTCTATGTCTGTCAAGGGATCTTTCTTACAAGTAATGCACAACTTTCTCTTTTGCTTTGCCCTTATGGTCTGTGTTTACTCAGATTATGATCACATTTTGATTGAAGGCCACACCTTTTGAATACTATGGCTACTGAAAAATGGGTCCTTTCCTTCTGTGATTTCTATTTCATCAAATTCTTGTTGATTTGGATGGGTAAC

Coding sequence (CDS)

ATGGGCCGTGGAGTTAGCAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGTGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCGCCAGCGCCAGCGCCAGCACCAGCACCACGTTCTAATGAAGGAAAACCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCGAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Protein sequence

MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPRSNEGKPVSKPAASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK

Homology

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BLAST of Carg20584 vs. NCBI nr
Match: XP_023537697.1 (protein SPIRAL1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 2.8e-49
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXE KPVSKPAA
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEAKPVSKPAA 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
           SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD
Sbjct: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120

Query: 121 YLFGGAGGK 130
           YLFGGAGGK
Sbjct: 121 YLFGGAGGK 129

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BLAST of Carg20584 vs. NCBI nr
Match: XP_023002715.1 (protein SPIRAL1-like 1 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGK VSKPAA
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKHVSKPAA 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
            KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD
Sbjct: 61  FKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120

Query: 121 YLFGGAGGK 130
           YLFGGAGGK
Sbjct: 121 YLFGGAGGK 129

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BLAST of Carg20584 vs. NCBI nr
Match: XP_022951957.1 (protein SPIRAL1-like 1 [Cucurbita moschata])

HSP 1 Score: 199.1 bits (505), Expect = 9.0e-48
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGG--XXXXXXXXXXXXXXXXXXEGKPVSKP 60
           MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGG  XXXXXXXXXXXXXXXXXXE KPVSKP
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXXXEAKPVSKP 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
           AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS
Sbjct: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120

Query: 121 LDYLFGGAGGK 130
           LDYLFGGAGGK
Sbjct: 121 LDYLFGGAGGK 131

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BLAST of Carg20584 vs. NCBI nr
Match: XP_008445444.1 (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445447.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 102/128 (79.69%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAAS 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                  EGK VSKPA S
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG----------RQAPPPSNEGKTVSKPAVS 62

Query: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
           KPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY
Sbjct: 63  KPAATASPPADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 120

Query: 122 LFGGAGGK 130
           LFGGAGGK
Sbjct: 123 LFGGAGGK 120

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BLAST of Carg20584 vs. NCBI nr
Match: XP_004144171.1 (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus] >KGN47654.1 hypothetical protein Csa_6G366520 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 100/128 (78.12%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAAS 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                  E K +SKPA S
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG----------RQAPPPPSEAKTISKPAVS 62

Query: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
           KPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY
Sbjct: 63  KPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 120

Query: 122 LFGGAGGK 130
           LFGGAGGK
Sbjct: 123 LFGGAGGK 120

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BLAST of Carg20584 vs. TAIR10
Match: AT1G26355.1 (SPIRAL1-like1)

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-29
Identity = 79/132 (59.85%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESP-----NAGAPKGGXXXXXXXXXXXXXXXXXXEGKPV 60
           MGRGVS GGGQSSLGYLFGSGE+P     NA AP                     E  P+
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSS-------------------ETLPI 60

Query: 61  SKPAASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGG 120
           S  A   P   A+   +  KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGG
Sbjct: 61  S--ADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGG 111

Query: 121 GSSLDYLFGGAG 128
           GSSLDYLFGG G
Sbjct: 121 GSSLDYLFGGGG 111

[Close]

BLAST of Carg20584 vs. TAIR10
Match: AT1G69230.1 (SPIRAL1-like2)

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-29
Identity = 74/133 (55.64%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVS+GGGQSSLGYLFGSGE+P   A                          V+K  A
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAA--------------------------VNKTPA 60

Query: 61  SKPAATASPPT--------DSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAA 120
              ++  +PPT        DS KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+A
Sbjct: 61  ETESSAHAPPTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSA 107

Query: 121 PGGGSSLDYLFGG 126
           PGGGSSLDYLFGG
Sbjct: 121 PGGGSSLDYLFGG 107

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BLAST of Carg20584 vs. TAIR10
Match: AT2G03680.1 (spiral1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17
Identity = 78/125 (62.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRG S GGGQSSL YLFG             XXXXXXXXXXXXXXXXXX          
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
            +PA       +  KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLD
Sbjct: 61  VEPA-------ELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLD 117

Query: 121 YLFGG 126
           YLF G
Sbjct: 121 YLFTG 117

[Close]

BLAST of Carg20584 vs. TAIR10
Match: AT5G15600.1 (SPIRAL1-like4)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15
Identity = 65/125 (52.00%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 3   RGVSSGGGQSSLGYLFGSGES---PNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPA 62
           RGV+SGGG+SSLGYLFGSGES   PN    K G           XXXXXXX         
Sbjct: 5   RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTG---------FTXXXXXXXXXXXXXXXX 64

Query: 63  ASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 122
                              AG+   S NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSL
Sbjct: 65  XXXXXXXXXXXXXXXXXXSAGVR-GSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSL 119

Query: 123 DYLFG 125
            YLFG
Sbjct: 125 GYLFG 119

[Close]

BLAST of Carg20584 vs. TAIR10
Match: AT4G23496.1 (SPIRAL1-like5)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-14
Identity = 55/125 (44.00%), Postives = 61/125 (48.80%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGS-GESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPA 60
           M RG S GGGQSSLGYLFGS  E P   AP                            P 
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAP----------------------------PV 60

Query: 61  ASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 120
           A KPA      +             S+NNY R  GQN+GNF+TDRP+TKV + PGGGSSL
Sbjct: 61  APKPAPPYGVDSTEEDHEADQKPKISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSL 97

Query: 121 DYLFG 125
            YLFG
Sbjct: 121 GYLFG 97

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BLAST of Carg20584 vs. Swiss-Prot
Match: sp|B3H4F1|SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-28
Identity = 79/132 (59.85%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESP-----NAGAPKGGXXXXXXXXXXXXXXXXXXEGKPV 60
           MGRGVS GGGQSSLGYLFGSGE+P     NA AP                     E  P+
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSS-------------------ETLPI 60

Query: 61  SKPAASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGG 120
           S  A   P   A+   +  KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGG
Sbjct: 61  S--ADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGG 111

Query: 121 GSSLDYLFGGAG 128
           GSSLDYLFGG G
Sbjct: 121 GSSLDYLFGGGG 111

[Close]

BLAST of Carg20584 vs. Swiss-Prot
Match: sp|Q9LE54|SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-28
Identity = 74/133 (55.64%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVS+GGGQSSLGYLFGSGE+P   A                          V+K  A
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAA--------------------------VNKTPA 60

Query: 61  SKPAATASPPT--------DSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAA 120
              ++  +PPT        DS KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+A
Sbjct: 61  ETESSAHAPPTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSA 107

Query: 121 PGGGSSLDYLFGG 126
           PGGGSSLDYLFGG
Sbjct: 121 PGGGSSLDYLFGG 107

[Close]

BLAST of Carg20584 vs. Swiss-Prot
Match: sp|Q2QQ99|SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-21
Identity = 63/125 (50.40%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVSSGGGQSSLGYLFG GE+P +                                  
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEAPKS-----------------------------XXXXX 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
                      +  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLD
Sbjct: 61  XXXXXXXXSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLD 96

Query: 121 YLFGG 126
           YLF G
Sbjct: 121 YLFSG 96

[Close]

BLAST of Carg20584 vs. Swiss-Prot
Match: sp|Q7Y1L9|SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-19
Identity = 83/126 (65.87%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           M RG S+GGGQSSLGYLFG  E+P    P   XXXXXXXXXXXXXXXXXX          
Sbjct: 1   MSRGGSAGGGQSSLGYLFGGNEAPK---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 120
                T        KQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL
Sbjct: 61  XXXXXT--------KQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSL 115

Query: 121 DYLFGG 126
            YLFGG
Sbjct: 121 GYLFGG 115

[Close]

BLAST of Carg20584 vs. Swiss-Prot
Match: sp|Q2R0W8|SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-17
Identity = 77/124 (62.10%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAAS 61
           GRGVSSGGGQSSLGYLFG             XXXXXXXXXXXXXXXXXX           
Sbjct: 4   GRGVSSGGGQSSLGYLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKM 63

Query: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
                        K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL Y
Sbjct: 64  -------------KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGY 114

Query: 122 LFGG 126
           LFGG
Sbjct: 124 LFGG 114

[Close]

BLAST of Carg20584 vs. TrEMBL
Match: tr|A0A1S3BCR3|A0A1S3BCR3_CUCME (protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.0e-43
Identity = 102/128 (79.69%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAAS 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                  EGK VSKPA S
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG----------RQAPPPSNEGKTVSKPAVS 62

Query: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
           KPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY
Sbjct: 63  KPAATASPPADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 120

Query: 122 LFGGAGGK 130
           LFGGAGGK
Sbjct: 123 LFGGAGGK 120

[Close]

BLAST of Carg20584 vs. TrEMBL
Match: tr|A0A0A0KFN2|A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366520 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.5e-43
Identity = 100/128 (78.12%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAAS 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG                  E K +SKPA S
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGG----------RQAPPPPSEAKTISKPAVS 62

Query: 62  KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 121
           KPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY
Sbjct: 63  KPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDY 120

Query: 122 LFGGAGGK 130
           LFGGAGGK
Sbjct: 123 LFGGAGGK 120

[Close]

BLAST of Carg20584 vs. TrEMBL
Match: tr|A0A059D7D9|A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03146 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31
Identity = 84/127 (66.14%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVSSGGGQSSLGYLFGSGE+P A A                          V  P  
Sbjct: 129 MGRGVSSGGGQSSLGYLFGSGEAPKAAASS-----------------PQTAPAEVDNPXX 188

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
           SKP A  SPP D  KQIPAGIHS+SSNNY+RADGQNTGNF+TDRPSTKVH APGGGSSLD
Sbjct: 189 SKP-AVVSPPVDVTKQIPAGIHSTSSNNYMRADGQNTGNFLTDRPSTKVHNAPGGGSSLD 237

Query: 121 YLFGGAG 128
           YLFGGAG
Sbjct: 249 YLFGGAG 237

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BLAST of Carg20584 vs. TrEMBL
Match: tr|A0A2P4JT90|A0A2P4JT90_QUESU (Protein spiral1-like 1 OS=Quercus suber OX=58331 GN=CFP56_37032 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-30
Identity = 87/130 (66.92%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRGVSSGGGQSSLGYLFGSGE+P   APK                    E   V+   A
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGEAP---APK---------PVQTNVEAAPSEAPAVNNSPA 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
            KP ATASPP D  KQIPAGIHS+S+NNY+RADGQNTGNFITDRPSTKVH+APGGGSSL 
Sbjct: 61  PKP-ATASPPVDVTKQIPAGIHSTSTNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLG 117

Query: 121 YLFGG--AGG 129
           YLFGG  AGG
Sbjct: 121 YLFGGGPAGG 117

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BLAST of Carg20584 vs. TrEMBL
Match: tr|W9QNX4|W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026438 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.5e-30
Identity = 81/128 (63.28%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGXXXXXXXXXXXXXXXXXXEGKPVSKPAA 60
           MGRG SSGGGQSSLGYLFGSGE+P     K                    E + V+   A
Sbjct: 1   MGRGNSSGGGQSSLGYLFGSGEAPKPATNKAA--------------APTNEVRAVNDVPA 60

Query: 61  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 120
           SKP A    P D  KQIPAGI+S+S+NNY+RADGQNTGNFITDRPSTKVHAAPGGGSSLD
Sbjct: 61  SKPTAAPPQPVDVSKQIPAGINSTSTNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLD 114

Query: 121 YLFGGAGG 129
           YLFGG GG
Sbjct: 121 YLFGGPGG 114

The following BLAST results are available for this feature:

BLAST of Carg20584 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537697.1	2.8e-49	99.22	protein SPIRAL1-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_023002715.1	3.1e-48	98.45	protein SPIRAL1-like 1 [Cucurbita maxima]	[more]
XP_022951957.1	9.0e-48	97.71	protein SPIRAL1-like 1 [Cucurbita moschata]	[more]
XP_008445444.1	3.0e-43	79.69	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: prot...	[more]
XP_004144171.1	1.1e-42	78.13	PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 PREDICTED: p...	[more]

BLAST of Carg20584 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	1.0e-29	59.85	SPIRAL1-like1	[more]
AT1G69230.1	3.0e-29	55.64	SPIRAL1-like2	[more]
AT2G03680.1	1.5e-17	62.40	spiral1	[more]
AT5G15600.1	1.9e-15	52.00	SPIRAL1-like4	[more]
AT4G23496.1	2.7e-14	44.00	SPIRAL1-like5	[more]

BLAST of Carg20584 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B3H4F1\|SP1L1_ARATH	1.8e-28	59.85	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
sp\|Q9LE54\|SP1L2_ARATH	5.4e-28	55.64	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
sp\|Q2QQ99\|SP1L3_ORYSJ	4.9e-21	50.40	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]
sp\|Q7Y1L9\|SP1L1_ORYSJ	6.0e-19	65.87	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 ...	[more]
sp\|Q2R0W8\|SP1L2_ORYSJ	2.5e-17	62.10	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 ...	[more]

BLAST of Carg20584 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCR3\|A0A1S3BCR3_CUCME	2.0e-43	79.69	protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=4 SV=1	[more]
tr\|A0A0A0KFN2\|A0A0A0KFN2_CUCSA	7.5e-43	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366520 PE=4 SV=1	[more]
tr\|A0A059D7D9\|A0A059D7D9_EUCGR	3.9e-31	66.14	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03146 PE=4 SV...	[more]
tr\|A0A2P4JT90\|A0A2P4JT90_QUESU	2.5e-30	66.92	Protein spiral1-like 1 OS=Quercus suber OX=58331 GN=CFP56_37032 PE=4 SV=1	[more]
tr\|W9QNX4\|W9QNX4_9ROSA	9.5e-30	63.28	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026438 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20584-RA	Carg20584-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..129
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR33403:SF11	PROTEIN SPIRAL1-RELATED	coord: 1..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20584	Cla022029	Watermelon (97103) v1	carwmB0649
Carg20584	Csa6G366520	Cucumber (Chinese Long) v2	carcuB0673
Carg20584	MELO3C011417	Melon (DHL92) v3.5.1	carmeB0649
Carg20584	ClCG08G010450	Watermelon (Charleston Gray)	carwcgB0633
Carg20584	CSPI06G19710	Wild cucumber (PI 183967)	carcpiB0683
Carg20584	Cucsa.327900	Cucumber (Gy14) v1	carcgyB0729
Carg20584	CmaCh05G004490	Cucurbita maxima (Rimu)	carcmaB0921
Carg20584	CmaCh12G001030	Cucurbita maxima (Rimu)	carcmaB0920
Carg20584	CmoCh12G000840	Cucurbita moschata (Rifu)	carcmoB0893
Carg20584	CmoCh05G004750	Cucurbita moschata (Rifu)	carcmoB0894
Carg20584	Lsi08G009000	Bottle gourd (USVL1VR-Ls)	carlsiB593
Carg20584	Cp4.1LG07g00840	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20584	Cp4.1LG11g03950	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20584	MELO3C011417.2	Melon (DHL92) v3.6.1	carmedB0659
Carg20584	CsaV3_6G033710	Cucumber (Chinese Long) v3	carcucB0685
Carg20584	Cla97C08G153310	Watermelon (97103) v2	carwmbB0679
Carg20584	Bhi04G000919	Wax gourd	carwgoB0766

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20584	Carg09264	Silver-seed gourd	carcarB164

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20584	Cucumber (Gy14) v2	carcgybB0649
Carg20584	Wax gourd	carwgoB0764