CmoCh12G000840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G000840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SPIRAL1-like1
Location	Cmo_Chr12 : 450208 .. 452773 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTCACAAGTATCTTCCCAGACTGCGTGCTAGGTACGAGTACACCAGCCCACTCATTTCTTTGTTCCCTCTGAAACTCTGAAGTTCGCCTCAGATCCGATCGTCGCCGGAAGGTTTGCGCCAATTTCTAACCCTTACACTTAGATCTTCTCTTACCTTCGTGTTTTTGTTTTCTTATCGCTCATTTCAGTTTCCGAATTCACGTTTTTGCTGTCATTGAACCAAGGATTTCATCTCAATGCGTGATTGTTTTAGCGTCTTTTTGCTCGATTACTTAGCGGTATACGATTGTTTGTTTAACTTCACTTGCATTCCTTGGCCAGATCTACTTGGTTTTCTCTCTCTCTTTTCTACTGCCAGATGTGTGCGGTTGGAACTGTTCTCTTTGCTTTTAATTTGAGATCGAGGTGTTGTGATGTTTGTTGGTCCGGATTTTCCCCTAGCTCTTTTTGTATTATCGTCTATTACCTCTTGATTGCTGCACTGATCAGATCTTGGTTATGCTTAGGGTTTGTTTGGCATGGCCGATTTTGCTAAATTGTGAGCGTGCTCATGTTTATTGATCGTATCAAAGATTATCAGACGATCTACAGTAAATGTCTACATTTTAACTGTTTCTTAGTTTTGGGTGAGTGATCAAAATTTGAGTTGTGTATTTAGGGTATAAGGCAGGTGGAACGTGCCTCTTGCGCTCCTGTGCAACTTTTTGTCAATAAATATGAAACAACTGTAGTAGGTTGACAGAAATGGTGGTCGTGTTTTGAAATTGATGTAATAGCTCCATTTCTCATGTTCCATGTCTTTGCTTTGGTTGTCTTCTAGGATCAATATTTTATTTGGAAATTTATTGCTCTTAACATATCCTCTTTAGAGCACGACAACACCTTTACAACTTTCTATTTATTGTGCAACGTAGGTCATGGTTGTATATTCACGATTAGGGTTGTTGTTTTACTTATTTAGAGGACAATCTTTACCTCAGCAAATTAGGACTCTTTTGGTACATGCTGAAGTTAGAGAAGTCCCTAAATGGTTATAACAAAGCAATGATTAACATGGAAATATGGATCGAGTGTGATGTTCAAACATCAATTTCAACATTTTGTTTCTATATAGGCTTGATTTCTTACACTATAACTCGAGATTCAAAATTTTCTTTTGATTCTTGGATAAGTTATATGCAATACATAGATTTCTAAGCATGCTTTTGAGGTCCTTCAGCCATGTAGTTTCACCCATTTATGTTCTAACCTTCATTTATTTTTTTGTTTTCCATTTCTTCTGGTTGGAAGGCAAGCTTCTGAGTTGTGACATTTGAAAGAAATCAAAGAGCCATGGGCCGTGGAGTTAGTAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGGGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGTATGGCTACATTTAGGATTATTCTGCAATTGATCTTGTCTTACCTAACTACTAGCATGTTGTTGATAACTGCTAGGGAAGTAATTTTGTTTCAGTTTAACATGTTTCAAATACAGTTTGTTTGGTCTATCAACGAATCTTTCTATCCAATCTAGACAATACGATGGTCAACTAACCTTACCACTCACTTTCCTGTGTGCCCTAATGAGTGTGACATTTGACATGATGTGTCATTCAGTCCTTAAATATTGCAAATACATACTGAATATTTTGAGTATGACATAGTGCTAATCCTGAGAAAAAGAATGTTTGTGTGACCATTCAGTTAGGTGTGATGTTAAAATGTTAATATATGGGAGCAAACAAGGAAAATGTATTACTTGGATTTGGATGTAAGTAATTACTTTTAGACCACAGAATTATGTCACAGTCATGTCTAGATAATAAGAGCATTGTGCAGCCGCTATGATAACCCACTTGCTCATCTTTCTGTTAATCACATTTTAGGCTGTTGTTTCAAATTCTTCCATTTTCCTGTCCCATCTTTGAATTGTTGAAGACATCATCATATCCATGACTTATCTTCATGATTATTTTCTCAAATTGCACTCAAGGACGTCCACATCTCTTCAGCTTGTTTTACGCATATGTGGTCTTATCACCCCACACAGAGGAATAATTGTCGAAAATCACCCAATCTAGGCCAGACACAAAAGAGGAAGAAAGCTTTGTTACCCTGATATGATAACTACTGCAAAAAGAGCATCCTGGCAAATTTGTTTGAAACCAACCCCCCCTATAGAGTGATTGATCGGCTTTCTTTTGTGGGTGCAGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

mRNA sequence

TAATTTCACAAGTATCTTCCCAGACTGCGTGCTAGGTACGAGTACACCAGCCCACTCATTTCTTTGTTCCCTCTGAAACTCTGAAGTTCGCCTCAGATCCGATCGTCGCCGGAAGATCTACTTGGTTTTCTCTCTCTCTTTTCTACTGCCAGATGTGTGCGGTTGGAACTGTTCTCTTTGCTTTTAATTTGAGATCGAGGTGTTGTGATGTTTGTTGGTCCGGATTTTCCCCTAGCTCTTTTTGTATTATCGTCTATTACCTCTTGATTGCTGCACTGATCAGATCTTGGTTATGCTTAGGGTTTGTTTGGCATGGCCGATTTTGCTAAATTGTGAGCGTGCTCATGTTTATTGATCGTATCAAAGATTATCAGACGATCTACAGTAAATGTCTACATTTTAACTGTTTCTTAGTTTTGGGCAAGCTTCTGAGTTGTGACATTTGAAAGAAATCAAAGAGCCATGGGCCGTGGAGTTAGTAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGGGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Coding sequence (CDS)

ATGGGCCGTGGAGTTAGTAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGGGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Homology

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BLAST of CmoCh12G000840 vs. Swiss-Prot
Match: SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.4e-30
Identity = 86/128 (67.19%), Postives = 92/128 (71.88%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           M RG S+GGGQSSLGYLFG  E     APK    PAPA APAPAPAPAP +  A P  KP
Sbjct: 1   MSRGGSAGGGQSSLGYLFGGNE-----APKPAAKPAPAAAPAPAPAPAPAAAVAAPAEKP 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGS 120
           + +K  AT        KQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGS
Sbjct: 61  SPAKADAT--------KQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGS 115

Query: 121 SLDYLFGG 128
           SL YLFGG
Sbjct: 121 SLGYLFGG 115

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BLAST of CmoCh12G000840 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 83/129 (64.34%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVS GGGQSSLGYLFGSGE           AP PA   APAP     S+E  P+S  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGE-----------APKPAINNAPAP-----SSETLPIS-- 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
           A   P   A+   +  KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSS
Sbjct: 61  ADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSS 111

Query: 121 LDYLFGGAG 130
           LDYLFGG G
Sbjct: 121 LDYLFGGGG 111

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BLAST of CmoCh12G000840 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-26
Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVS+GGGQSSLGYLFGSGE+P   A    + PA   + A AP               
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAV--NKTPAETESSAHAP--------------- 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
                 A A+   DS KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSS
Sbjct: 61  ---PTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSS 107

Query: 121 LDYLFGG 128
           LDYLFGG
Sbjct: 121 LDYLFGG 107

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BLAST of CmoCh12G000840 vs. Swiss-Prot
Match: SPR1_ARATH (Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-24
Identity = 78/130 (60.00%), Postives = 86/130 (66.15%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSN-EAKPVSK 60
           MGRG S GGGQSSL YLF            GG APAP P PAP PAP   +N  A PV+ 
Sbjct: 1   MGRGNSCGGGQSSLDYLF------------GGDAPAPKPVPAPRPAPTESNNGPAPPVTA 60

Query: 61  PAAS--KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGG 120
             A+    A T+  P +  KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGG
Sbjct: 61  VTATALTTATTSVEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGG 117

Query: 121 GSSLDYLFGG 128
           GSSLDYLF G
Sbjct: 121 GSSLDYLFTG 117

[Close]

BLAST of CmoCh12G000840 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-24
Identity = 73/127 (57.48%), Postives = 80/127 (62.99%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVSSGGGQSSLGYLFG           GG+AP  A  PAP   PAP S+  K     
Sbjct: 1   MGRGVSSGGGQSSLGYLFG-----------GGEAPKSAEKPAPVQKPAPSSSAEKL---- 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
                           K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSS
Sbjct: 61  ----------------KEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSS 96

Query: 121 LDYLFGG 128
           LDYLF G
Sbjct: 121 LDYLFSG 96

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BLAST of CmoCh12G000840 vs. TrEMBL
Match: A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 103/130 (79.23%), Postives = 108/130 (83.08%), Query Frame = 1


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKPA 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG+   P P            +EAK +SKPA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPP------------SEAKTISKPA 62

Query: 62  ASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 121
            SKPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL
Sbjct: 63  VSKPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 120

Query: 122 DYLFGGAGGK 132
           DYLFGGAGGK
Sbjct: 123 DYLFGGAGGK 120

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BLAST of CmoCh12G000840 vs. TrEMBL
Match: M5XNQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVSSGGGQSSLGYLFGSGE+P   A     AP P              NE + V+  
Sbjct: 60  MGRGVSSGGGQSSLGYLFGSGEAPKPAANNTQAAPIP--------------NEGRVVTNE 119

Query: 61  AASKPAAT--ASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGG 120
            ASKP A   A  P D  KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGG
Sbjct: 120 PASKPTAPPPAPEPVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGG 177

Query: 121 SSLDYLFGGAGG 131
           SSLDYLFGG GG
Sbjct: 180 SSLDYLFGGPGG 177

[Close]

BLAST of CmoCh12G000840 vs. TrEMBL
Match: A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 88/129 (68.22%), Postives = 93/129 (72.09%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVSSGGGQSSLGYLFGSGE+P A A     +P  APA    P P             
Sbjct: 129 MGRGVSSGGGQSSLGYLFGSGEAPKAAA----SSPQTAPAEVDNPPP------------- 188

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
             SKP A  SPP D  KQIPAGIHS+SSNNY+RADGQNTGNF+TDRPSTKVH APGGGSS
Sbjct: 189 --SKP-AVVSPPVDVTKQIPAGIHSTSSNNYMRADGQNTGNFLTDRPSTKVHNAPGGGSS 237

Query: 121 LDYLFGGAG 130
           LDYLFGGAG
Sbjct: 249 LDYLFGGAG 237

[Close]

BLAST of CmoCh12G000840 vs. TrEMBL
Match: A0A061E9M7_THECC (T1K7.26 protein OS=Theobroma cacao GN=TCM_011514 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-30
Identity = 89/135 (65.93%), Postives = 93/135 (68.89%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPA-----PAPAPAPAPRSNEAK 60
           MGRGVSSGGGQSSLGYLFGSGE+P  G  K   AP  APA     PAPAPAPAP      
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGEAPKPGTNKPQAAPTEAPAVSKSAPAPAPAPAPE----- 60

Query: 61  PVSKPAASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAP 120
                           P D  KQ PAGI+S+S+NNYLRADGQNTGNFITDRPSTKVHAAP
Sbjct: 61  ----------------PVDITKQTPAGINSTSTNNYLRADGQNTGNFITDRPSTKVHAAP 114

Query: 121 GGGSSLDYLFGGAGG 131
           GGGSSL YLFGGA G
Sbjct: 121 GGGSSLGYLFGGAPG 114

[Close]

BLAST of CmoCh12G000840 vs. TrEMBL
Match: W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30
Identity = 87/130 (66.92%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRG SSGGGQSSLGYLFGSGE           AP PA   A AP     +NE + V+  
Sbjct: 1   MGRGNSSGGGQSSLGYLFGSGE-----------APKPATNKAAAP-----TNEVRAVNDV 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
            ASKP A    P D  KQIPAGI+S+S+NNY+RADGQNTGNFITDRPSTKVHAAPGGGSS
Sbjct: 61  PASKPTAAPPQPVDVSKQIPAGINSTSTNNYMRADGQNTGNFITDRPSTKVHAAPGGGSS 114

Query: 121 LDYLFGGAGG 131
           LDYLFGG GG
Sbjct: 121 LDYLFGGPGG 114

[Close]

BLAST of CmoCh12G000840 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 127.1 bits (318), Expect = 8.0e-30
Identity = 83/129 (64.34%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVS GGGQSSLGYLFGSGE           AP PA   APAP     S+E  P+S  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGE-----------APKPAINNAPAP-----SSETLPIS-- 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
           A   P   A+   +  KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSS
Sbjct: 61  ADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSS 111

Query: 121 LDYLFGGAG 130
           LDYLFGG G
Sbjct: 121 LDYLFGGGG 111

[Close]

BLAST of CmoCh12G000840 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVS+GGGQSSLGYLFGSGE+P   A    + PA   + A AP               
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAV--NKTPAETESSAHAP--------------- 60

Query: 61  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120
                 A A+   DS KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSS
Sbjct: 61  ---PTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSS 107

Query: 121 LDYLFGG 128
           LDYLFGG
Sbjct: 121 LDYLFGG 107

[Close]

BLAST of CmoCh12G000840 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 78/130 (60.00%), Postives = 86/130 (66.15%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSN-EAKPVSK 60
           MGRG S GGGQSSL YLF            GG APAP P PAP PAP   +N  A PV+ 
Sbjct: 1   MGRGNSCGGGQSSLDYLF------------GGDAPAPKPVPAPRPAPTESNNGPAPPVTA 60

Query: 61  PAAS--KPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGG 120
             A+    A T+  P +  KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGG
Sbjct: 61  VTATALTTATTSVEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGG 117

Query: 121 GSSLDYLFGG 128
           GSSLDYLF G
Sbjct: 121 GSSLDYLFTG 117

[Close]

BLAST of CmoCh12G000840 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3)

HSP 1 Score: 87.0 bits (214), Expect = 9.1e-18
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 3   RGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKPAA 62
           RGV++G  +SSLGYLFGSG+  +A A   G                  +      +    
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTT---------------TTTTTTTTDGTG 64

Query: 63  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 122
            +P  T +      K+  AG+  S  NNY R++GQN GNF+TDRPSTKVHAAPGGGSSLD
Sbjct: 65  GRPITTTTTTVTDNKKTSAGVRGSP-NNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLD 113

Query: 123 YLFGG 128
           YLFGG
Sbjct: 125 YLFGG 113

[Close]

BLAST of CmoCh12G000840 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-17
Identity = 62/128 (48.44%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 3   RGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKPAA 62
           RGV+SGGG+SSLGYLFGSGES             P P    A      +      +  A 
Sbjct: 5   RGVNSGGGESSLGYLFGSGES------------VPKPNKPNAKTGFTTTTTTTTTTDGAG 64

Query: 63  SKPAATASPPTDSGK----QIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGG 122
            +P  T +  T   K    +  AG+  S  NNY R+DGQN GNF+T+RPSTKVHAAPGGG
Sbjct: 65  GRPKTTTTTTTTGDKNKTEENSAGVRGSP-NNYYRSDGQNCGNFLTERPSTKVHAAPGGG 119

Query: 123 SSLDYLFG 127
           SSL YLFG
Sbjct: 125 SSLGYLFG 119

[Close]

BLAST of CmoCh12G000840 vs. NCBI nr
Match: gi|659089321|ref|XP_008445444.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44
Identity = 107/131 (81.68%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGG-QAPAPAPAPAPAPAPAPRSNEAKPVSKP 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG QAP P             SNE K VSKP
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP-------------SNEGKTVSKP 62

Query: 62  AASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 121
           A SKPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS
Sbjct: 63  AVSKPAATASPPADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSS 120

Query: 122 LDYLFGGAGGK 132
           LDYLFGGAGGK
Sbjct: 123 LDYLFGGAGGK 120

[Close]

BLAST of CmoCh12G000840 vs. NCBI nr
Match: gi|449452849|ref|XP_004144171.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.7e-43
Identity = 103/130 (79.23%), Postives = 108/130 (83.08%), Query Frame = 1


Query: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKPA 61
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG+   P P            +EAK +SKPA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPP------------SEAKTISKPA 62

Query: 62  ASKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 121
            SKPAATASPP D  KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL
Sbjct: 63  VSKPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL 120

Query: 122 DYLFGGAGGK 132
           DYLFGGAGGK
Sbjct: 123 DYLFGGAGGK 120

[Close]

BLAST of CmoCh12G000840 vs. NCBI nr
Match: gi|645277568|ref|XP_008243832.1| (PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume])

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVSSGGGQSSLGYLFGSGE+P   A     AP P              NE + V+  
Sbjct: 13  MGRGVSSGGGQSSLGYLFGSGEAPKPAANNTQAAPIP--------------NEGRVVTNE 72

Query: 61  AASKPAAT--ASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGG 120
            ASKP A   A  P D  KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGG
Sbjct: 73  PASKPTAPPPAPEPVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGG 130

Query: 121 SSLDYLFGGAGG 131
           SSLDYLFGG GG
Sbjct: 133 SSLDYLFGGPGG 130

[Close]

BLAST of CmoCh12G000840 vs. NCBI nr
Match: gi|596288440|ref|XP_007225937.1| (hypothetical protein PRUPE_ppa012233mg [Prunus persica])

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVSSGGGQSSLGYLFGSGE+P   A     AP P              NE + V+  
Sbjct: 60  MGRGVSSGGGQSSLGYLFGSGEAPKPAANNTQAAPIP--------------NEGRVVTNE 119

Query: 61  AASKPAAT--ASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGG 120
            ASKP A   A  P D  KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGG
Sbjct: 120 PASKPTAPPPAPEPVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGG 177

Query: 121 SSLDYLFGGAGG 131
           SSLDYLFGG GG
Sbjct: 180 SSLDYLFGGPGG 177

[Close]

BLAST of CmoCh12G000840 vs. NCBI nr
Match: gi|645277571|ref|XP_008243833.1| (PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume])

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1


Query: 1   MGRGVSSGGGQSSLGYLFGSGESPNAGAPKGGQAPAPAPAPAPAPAPAPRSNEAKPVSKP 60
           MGRGVSSGGGQSSLGYLFGSGE+P   A     AP P              NE + V+  
Sbjct: 1   MGRGVSSGGGQSSLGYLFGSGEAPKPAANNTQAAPIP--------------NEGRVVTNE 60

Query: 61  AASKPAAT--ASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGG 120
            ASKP A   A  P D  KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGG
Sbjct: 61  PASKPTAPPPAPEPVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGG 118

Query: 121 SSLDYLFGGAGG 131
           SSLDYLFGG GG
Sbjct: 121 SSLDYLFGGPGG 118

The following BLAST results are available for this feature:

BLAST of CmoCh12G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L1_ORYSJ	4.4e-30	67.19	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1	[more]
SP1L1_ARATH	1.4e-28	64.34	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	3.9e-26	59.06	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SPR1_ARATH	2.1e-24	60.00	Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1	[more]
SP1L3_ORYSJ	3.6e-24	57.48	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1	[more]

BLAST of CmoCh12G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFN2_CUCSA	1.9e-43	79.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1	[more]
M5XNQ4_PRUPE	2.1e-31	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1	[more]
A0A059D7D9_EUCGR	1.4e-30	68.22	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1	[more]
A0A061E9M7_THECC	2.3e-30	65.93	T1K7.26 protein OS=Theobroma cacao GN=TCM_011514 PE=4 SV=1	[more]
W9QNX4_9ROSA	5.2e-30	66.92	Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1	[more]

BLAST of CmoCh12G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	8.0e-30	64.34	SPIRAL1-like1	[more]
AT1G69230.1	2.2e-27	59.06	SPIRAL1-like2	[more]
AT2G03680.1	1.2e-25	60.00	spiral1	[more]
AT3G02180.1	9.1e-18	45.60	SPIRAL1-like3	[more]
AT5G15600.1	7.7e-17	48.44	SPIRAL1-like4	[more]

BLAST of CmoCh12G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089321\|ref\|XP_008445444.1\|	9.1e-44	81.68	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]	[more]
gi\|449452849\|ref\|XP_004144171.1\|	2.7e-43	79.23	PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus]	[more]
gi\|645277568\|ref\|XP_008243832.1\|	3.0e-31	66.67	PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume]	[more]
gi\|596288440\|ref\|XP_007225937.1\|	3.0e-31	66.67	hypothetical protein PRUPE_ppa012233mg [Prunus persica]	[more]
gi\|645277571\|ref\|XP_008243833.1\|	3.0e-31	66.67	PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000840.1	CmoCh12G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 1..127 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G000840	Cucsa.327900	Cucumber (Gy14) v1	cgycmoB0904
CmoCh12G000840	CmaCh05G004490	Cucurbita maxima (Rimu)	cmacmoB765
CmoCh12G000840	Cla022029	Watermelon (97103) v1	cmowmB135
CmoCh12G000840	Csa6G366520	Cucumber (Chinese Long) v2	cmocuB175
CmoCh12G000840	MELO3C011417	Melon (DHL92) v3.5.1	cmomeB147
CmoCh12G000840	ClCG08G010450	Watermelon (Charleston Gray)	cmowcgB162
CmoCh12G000840	CSPI06G19710	Wild cucumber (PI 183967)	cmocpiB178
CmoCh12G000840	Lsi08G009000	Bottle gourd (USVL1VR-Ls)	cmolsiB176
CmoCh12G000840	Cp4.1LG07g00840	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G000840	Cp4.1LG11g03950	Cucurbita pepo (Zucchini)	cmocpeB148
CmoCh12G000840	MELO3C011417.2	Melon (DHL92) v3.6.1	cmomedB162
CmoCh12G000840	CsaV3_6G033710	Cucumber (Chinese Long) v3	cmocucB0208
CmoCh12G000840	Cla97C08G153310	Watermelon (97103) v2	cmowmbB179
CmoCh12G000840	Bhi04G000919	Wax gourd	cmowgoB0194
CmoCh12G000840	Carg09264	Silver-seed gourd	carcmoB0194
CmoCh12G000840	Carg20584	Silver-seed gourd	carcmoB0893

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G000840	CmoCh05G004750	Cucurbita moschata (Rifu)	cmocmoB150

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G000840	Wax gourd	cmowgoB0211
CmoCh12G000840	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G000840	Cucumber (Gy14) v2	cgybcmoB698
CmoCh12G000840	Cucumber (Chinese Long) v3	cmocucB0170