CmoCh12G000840.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAATTTCACAAGTATCTTCCCAGACTGCGTGCTAGGTACGAGTACACCAGCCCACTCATTTCTTTGTTCCCTCTGAAACTCTGAAGTTCGCCTCAGATCCGATCGTCGCCGGAAGGTTTGCGCCAATTTCTAACCCTTACACTTAGATCTTCTCTTACCTTCGTGTTTTTGTTTTCTTATCGCTCATTTCAGTTTCCGAATTCACGTTTTTGCTGTCATTGAACCAAGGATTTCATCTCAATGCGTGATTGTTTTAGCGTCTTTTTGCTCGATTACTTAGCGGTATACGATTGTTTGTTTAACTTCACTTGCATTCCTTGGCCAGATCTACTTGGTTTTCTCTCTCTCTTTTCTACTGCCAGATGTGTGCGGTTGGAACTGTTCTCTTTGCTTTTAATTTGAGATCGAGGTGTTGTGATGTTTGTTGGTCCGGATTTTCCCCTAGCTCTTTTTGTATTATCGTCTATTACCTCTTGATTGCTGCACTGATCAGATCTTGGTTATGCTTAGGGTTTGTTTGGCATGGCCGATTTTGCTAAATTGTGAGCGTGCTCATGTTTATTGATCGTATCAAAGATTATCAGACGATCTACAGTAAATGTCTACATTTTAACTGTTTCTTAGTTTTGGGTGAGTGATCAAAATTTGAGTTGTGTATTTAGGGTATAAGGCAGGTGGAACGTGCCTCTTGCGCTCCTGTGCAACTTTTTGTCAATAAATATGAAACAACTGTAGTAGGTTGACAGAAATGGTGGTCGTGTTTTGAAATTGATGTAATAGCTCCATTTCTCATGTTCCATGTCTTTGCTTTGGTTGTCTTCTAGGATCAATATTTTATTTGGAAATTTATTGCTCTTAACATATCCTCTTTAGAGCACGACAACACCTTTACAACTTTCTATTTATTGTGCAACGTAGGTCATGGTTGTATATTCACGATTAGGGTTGTTGTTTTACTTATTTAGAGGACAATCTTTACCTCAGCAAATTAGGACTCTTTTGGTACATGCTGAAGTTAGAGAAGTCCCTAAATGGTTATAACAAAGCAATGATTAACATGGAAATATGGATCGAGTGTGATGTTCAAACATCAATTTCAACATTTTGTTTCTATATAGGCTTGATTTCTTACACTATAACTCGAGATTCAAAATTTTCTTTTGATTCTTGGATAAGTTATATGCAATACATAGATTTCTAAGCATGCTTTTGAGGTCCTTCAGCCATGTAGTTTCACCCATTTATGTTCTAACCTTCATTTATTTTTTTGTTTTCCATTTCTTCTGGTTGGAAGGCAAGCTTCTGAGTTGTGACATTTGAAAGAAATCAAAGAGCCATGGGCCGTGGAGTTAGTAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGGGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGTATGGCTACATTTAGGATTATTCTGCAATTGATCTTGTCTTACCTAACTACTAGCATGTTGTTGATAACTGCTAGGGAAGTAATTTTGTTTCAGTTTAACATGTTTCAAATACAGTTTGTTTGGTCTATCAACGAATCTTTCTATCCAATCTAGACAATACGATGGTCAACTAACCTTACCACTCACTTTCCTGTGTGCCCTAATGAGTGTGACATTTGACATGATGTGTCATTCAGTCCTTAAATATTGCAAATACATACTGAATATTTTGAGTATGACATAGTGCTAATCCTGAGAAAAAGAATGTTTGTGTGACCATTCAGTTAGGTGTGATGTTAAAATGTTAATATATGGGAGCAAACAAGGAAAATGTATTACTTGGATTTGGATGTAAGTAATTACTTTTAGACCACAGAATTATGTCACAGTCATGTCTAGATAATAAGAGCATTGTGCAGCCGCTATGATAACCCACTTGCTCATCTTTCTGTTAATCACATTTTAGGCTGTTGTTTCAAATTCTTCCATTTTCCTGTCCCATCTTTGAATTGTTGAAGACATCATCATATCCATGACTTATCTTCATGATTATTTTCTCAAATTGCACTCAAGGACGTCCACATCTCTTCAGCTTGTTTTACGCATATGTGGTCTTATCACCCCACACAGAGGAATAATTGTCGAAAATCACCCAATCTAGGCCAGACACAAAAGAGGAAGAAAGCTTTGTTACCCTGATATGATAACTACTGCAAAAAGAGCATCCTGGCAAATTTGTTTGAAACCAACCCCCCCTATAGAGTGATTGATCGGCTTTCTTTTGTGGGTGCAGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA TAATTTCACAAGTATCTTCCCAGACTGCGTGCTAGGTACGAGTACACCAGCCCACTCATTTCTTTGTTCCCTCTGAAACTCTGAAGTTCGCCTCAGATCCGATCGTCGCCGGAAGATCTACTTGGTTTTCTCTCTCTCTTTTCTACTGCCAGATGTGTGCGGTTGGAACTGTTCTCTTTGCTTTTAATTTGAGATCGAGGTGTTGTGATGTTTGTTGGTCCGGATTTTCCCCTAGCTCTTTTTGTATTATCGTCTATTACCTCTTGATTGCTGCACTGATCAGATCTTGGTTATGCTTAGGGTTTGTTTGGCATGGCCGATTTTGCTAAATTGTGAGCGTGCTCATGTTTATTGATCGTATCAAAGATTATCAGACGATCTACAGTAAATGTCTACATTTTAACTGTTTCTTAGTTTTGGGCAAGCTTCTGAGTTGTGACATTTGAAAGAAATCAAAGAGCCATGGGCCGTGGAGTTAGTAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGGGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA ATGGGCCGTGGAGTTAGTAGTGGTGGTGGGCAGAGCTCATTGGGGTATCTGTTTGGAAGTGGAGAATCTCCCAATGCAGGGGCCCCCAAAGGTGGCCAAGCACCAGCTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACGTTCTAATGAAGCAAAGCCTGTATCCAAACCAGCAGCTTCCAAACCTGCTGCTACTGCTTCACCACCTACAGATTCTGGCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGATGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCAGCTCCTGGCGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA
BLAST of CmoCh12G000840.1 vs. Swiss-Prot
Match: SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 4.4e-30 Identity = 86/128 (67.19%), Postives = 92/128 (71.88%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28 Identity = 83/129 (64.34%), Postives = 91/129 (70.54%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 3.9e-26 Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. Swiss-Prot
Match: SPR1_ARATH (Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.1e-24 Identity = 78/130 (60.00%), Postives = 86/130 (66.15%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.6e-24 Identity = 73/127 (57.48%), Postives = 80/127 (62.99%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TrEMBL
Match: A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43 Identity = 103/130 (79.23%), Postives = 108/130 (83.08%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TrEMBL
Match: M5XNQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31 Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TrEMBL
Match: A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30 Identity = 88/129 (68.22%), Postives = 93/129 (72.09%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TrEMBL
Match: A0A061E9M7_THECC (T1K7.26 protein OS=Theobroma cacao GN=TCM_011514 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 2.3e-30 Identity = 89/135 (65.93%), Postives = 93/135 (68.89%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TrEMBL
Match: W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 5.2e-30 Identity = 87/130 (66.92%), Postives = 94/130 (72.31%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1) HSP 1 Score: 127.1 bits (318), Expect = 8.0e-30 Identity = 83/129 (64.34%), Postives = 91/129 (70.54%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2) HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27 Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1) HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25 Identity = 78/130 (60.00%), Postives = 86/130 (66.15%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3) HSP 1 Score: 87.0 bits (214), Expect = 9.1e-18 Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4) HSP 1 Score: 84.0 bits (206), Expect = 7.7e-17 Identity = 62/128 (48.44%), Postives = 73/128 (57.03%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. NCBI nr
Match: gi|659089321|ref|XP_008445444.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]) HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44 Identity = 107/131 (81.68%), Postives = 109/131 (83.21%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. NCBI nr
Match: gi|449452849|ref|XP_004144171.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus]) HSP 1 Score: 183.3 bits (464), Expect = 2.7e-43 Identity = 103/130 (79.23%), Postives = 108/130 (83.08%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. NCBI nr
Match: gi|645277568|ref|XP_008243832.1| (PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume]) HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31 Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. NCBI nr
Match: gi|596288440|ref|XP_007225937.1| (hypothetical protein PRUPE_ppa012233mg [Prunus persica]) HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31 Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1
BLAST of CmoCh12G000840.1 vs. NCBI nr
Match: gi|645277571|ref|XP_008243833.1| (PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume]) HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31 Identity = 88/132 (66.67%), Postives = 94/132 (71.21%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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