Cucsa.327900.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.327900.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	spiral1
Location	scaffold03159 : 203647 .. 205811 (+)
Sequence length	1029

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTATCTTTCTGTTTTCCTCTTTTTAATCCACAATCTACCTTTGTTTCCCCCCCcATTTTCTTCTTCCTTCATCATCTACCATTGTTTTATCGCATTCCTTCTCTAGATCTACTACTTGATTCATTCTCTTTGGATTTTCCTGTTTCTCCTTCCGGGTACCTCTCAATTGCTGAAACTATCAGATCTTGTTTCTTTCGCATCTTTGATTTTGTTCTTTTCTGACTGTGCTTAAGGGTTTTGCAGGATCTGTGGTATATGCCTACATTTTAACTGTTTCTTACTTTTTGGTCAAGTGATCGGTTTTTGAGATGGGTTTTTACGCTAGAACTTAGTACTCAGCTCAGCTGGGATATTCTTCTTGTGTTCCTGTGTGGGTTTTTtACTGTAAACAAaTTAAATCAAATCACACCACTGTATGGGATTAGTATAACTGGTTGTTTTGTTTTGAAATTGATGCTATTGTTAATGGCTTCATGTGTCTTGTGTTCCGTTTTTCAATGTCTTGTTTGTCTTGGTATAATCTTTTTGTTTGGAGATCTATTGCTCTTACTATATCTTCTTTAATTTCATCACGACAGCTTTAGGCCTTGTCAGTATCTTCTTCATTTAGGTTGGGATTTATTTATTTATTTATTCAGCTGGCAGTCTTTACCACAGAAACAGGTCTTGTGGCTAGTTTTTCCAATATATATATATTATACCATCGTAAAAGAATATTATTATTATCTCAGACCTAACTGTTGAAAGTATGAGTCGTTAGATACCAAAGTTAGAAAAACCCATGAACTGTTACGACTAAGGGAATTAACATGAAAACATGGATCAAGTGTGATGTTCAAACATCAAGTTTGATGTTTTATTATAGTAGAGGCTTGAGTTTTACATTTTAACTCGAGATTTCTTTGGATACTTGATAGGACTATTTGCAATATATGAGATCCTTCAGCCATCGATTTTCACTCATTTATGTTCTCAGTCTTCTGATCTTTATTATTATTCTTTTTCCTGGTTGTAAGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAACCGAAGTGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGTATAGCTACCCTTTATGAGTATTCTGCAATTTATTTGGTCTAATTTGACTGCTAGCATGTTGCCGATGATTGATACATATATAATCTTGGATTAGGGTCCATATTGCACCTATTTAGTTTAGCATACGATACGTCAATTGCAGTTTGCTTGGATTAGATGTTTACTGCACCTATTTATCTAGTCTCGTCCTCCTCTTTCTACCTATCTTTGAATTGTACGATCCAAGAGTAGTAGCCAAACGGGCATGTGCTAAAAGAAGATTGTACTGTAACTGATCTTTTGCCAAAATGGGACCATGATATACCTTGATATGATATAATCAAAAAGGGGATTATAGTGATTTATTAGCTTTGTTTGTGGATGGTGCAGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAACCTGCAAATCAGAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCGTGTCGAAGGGGCAATGTTTTTTTTtCTtCTTTTCTTCCATCTGAAACGATACTATGGCAGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTGATTCAGTCAAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTATCCGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAAACTCTCTTTTATCTTCATGGTCTTCTATTTCTATTCAGATTAGCTCCATTTCTTCAAACTCCAAATGACTTCTTAATCTAAAAGGCAGAAACA

mRNA sequence

TCTCTTTATCTTTCTGTTTTCCTCTTTTTAATCCACAATCTACCTTTGTTTCCCCCCCCATTTTCTTCTTCCTTCATCATCTACCATTGTTTTATCGCATTCCTTCTCTAGATCTACTACTTGATTCATTCTCTTTGGATTTTCCTGTTTCTCCTTCCGGGTACCTCTCAATTGCTGAAACTATCAGATCTTGTTTCTTTCGCATCTTTGATTTTGTTCTTTTCTGACTGTGCTTAAGGGTTTTGCAGGATCTGTGGCAAGCTTCTGAGTTGTGACATTTCAAAGAAACCGAAGTGCCATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGAAACCTGCAAATCAGAACTAAATAGAGCTATTTGACGATCCATTTTATGTGAATTTTTATATCGTGTCGAAGGGGCAATGTTTTTTTTTCTTCTTTTCTTCCATCTGAAACGATACTATGGCAGGACGATATGCTTTTCGATGTAATGTGTAGATGCTTATGGTTTCTGCTCTCTGTTCTTGGGTTTGATTCAGTCAAAATTTTATTTTGGATTCATGAAAAGCTGTTGTGAGCTATCCGTGTCTGTCAAGGATCTTTCTTACAAGTAATGCATAAACTCTCTTTTATCTTCATGGTCTTCTATTTCTATTCAGATTAGCTCCATTTCTTCAAACTCCAAATGACTTCTTAATCTAAAAGGCAGAAACA

Coding sequence (CDS)

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCAAAAGGTGGCCGCCAAGCACCGCCGCCTCCAAGTGAAGCGAAGACTATATCCAAACCAGCAGTGTCTAAACCTGCTGCTACTGCTTCACCACCTGCAGATATTTCCAAGCAGATTCCAGCTGGTATTCACAGTAGCTCATCAAACAACTATTTGAGGGCAGATGGTCAAAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGCGGGGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Protein sequence

MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK*

Homology

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BLAST of Cucsa.327900.2 vs. Swiss-Prot
Match: SP1L1_ARATH (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-35
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP P SE   IS  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +++KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of Cucsa.327900.2 vs. Swiss-Prot
Match: SP1L2_ARATH (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-32
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A           + A+T S        A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN--------KTPAETESSAHAPPTQAAAANAV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of Cucsa.327900.2 vs. Swiss-Prot
Match: SP1L1_ORYSJ (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.2e-31
Identity = 76/116 (65.52%), Postives = 83/116 (71.55%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP-PSEAKTISKPAVSKPAATASPP- 63
           RG S+GGGQSSLGYLFG  +AP   A      AP P P+ A      AV+ PA   SP  
Sbjct: 3   RGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAA---AVAAPAEKPSPAK 62

Query: 64  ADISKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           AD +KQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 63  ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

[Close]

BLAST of Cucsa.327900.2 vs. Swiss-Prot
Match: SP1L2_ORYSJ (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.1e-30
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPP- 62
           GRGVSSGGGQSSLGYLFG G+   A   K     P   +E +T   P      A A+ P 
Sbjct: 4   GRGVSSGGGQSSLGYLFGGGETAPAAKAK-----PAAAAEKETTPAPVKKAAVAAAASPS 63

Query: 63  -ADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 64  AAEKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

[Close]

BLAST of Cucsa.327900.2 vs. Swiss-Prot
Match: SP1L3_ORYSJ (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.0e-30
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPA-VSKPAATASPP 62
           GRGVSSGGGQSSLGYLFG G+AP                  K+  KPA V KPA ++S  
Sbjct: 2   GRGVSSGGGQSSLGYLFGGGEAP------------------KSAEKPAPVQKPAPSSS-- 61

Query: 63  ADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLDYLF G
Sbjct: 62  AEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

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BLAST of Cucsa.327900.2 vs. TrEMBL
Match: A0A0A0KFN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.6e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of Cucsa.327900.2 vs. TrEMBL
Match: M5XNQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 61  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 120

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 121 PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 177

[Close]

BLAST of Cucsa.327900.2 vs. TrEMBL
Match: A0A059D7D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+AP A A         P +    +  P  SKPA   SPP 
Sbjct: 130 GRGVSSGGGQSSLGYLFGSGEAPKAAASS-------PQTAPAEVDNPPPSKPAVV-SPPV 189

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           D++KQIPAGIHS+SSNNY+RADGQNTGNF+TDRPSTKVH APGGGSSLDYLFGGAG
Sbjct: 190 DVTKQIPAGIHSTSSNNYMRADGQNTGNFLTDRPSTKVHNAPGGGSSLDYLFGGAG 237

[Close]

BLAST of Cucsa.327900.2 vs. TrEMBL
Match: W9QNX4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRG SSGGGQSSLGYLFG G+AP     K    A  P +E + ++    SKP A    P 
Sbjct: 2   GRGNSSGGGQSSLGYLFGSGEAPKPATNK----AAAPTNEVRAVNDVPASKPTAAPPQPV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           D+SKQIPAGI+S+S+NNY+RADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG GG
Sbjct: 62  DVSKQIPAGINSTSTNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGPGG 114

[Close]

BLAST of Cucsa.327900.2 vs. TrEMBL
Match: A0A0D2W4F6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G094900 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-37
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+AP AG            S+A     PAVSKPA  A  P 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPKAGTNN---------SQAAPAEAPAVSKPAP-APEPV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           DISKQIPAGI+S S+NNY+RADGQNTGNF+TDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 62  DISKQIPAGINSISANNYMRADGQNTGNFLTDRPSTKVHSAPGGGSSLDYLFGGPGG 108

[Close]

BLAST of Cucsa.327900.2 vs. TAIR10
Match: AT1G26355.1 (AT1G26355.1 SPIRAL1-like1)

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-36
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP P SE   IS  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSETLPIS--ADPSPKHVAAQTV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           +++KQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of Cucsa.327900.2 vs. TAIR10
Match: AT1G69230.1 (AT1G69230.1 SPIRAL1-like2)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-33
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A           + A+T S        A A+   
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN--------KTPAETESSAHAPPTQAAAANAV 61

Query: 63  DISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of Cucsa.327900.2 vs. TAIR10
Match: AT2G03680.1 (AT2G03680.1 spiral1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-30
Identity = 74/121 (61.16%), Postives = 83/121 (68.60%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP-- 62
           GRG S GGGQSSL YLFG GDAP   APK      P P+E+     P V+   ATA    
Sbjct: 2   GRGNSCGGGQSSLDYLFG-GDAP---APKPVPAPRPAPTESNNGPAPPVTAVTATALTTA 61

Query: 63  -----PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 117
                PA+++KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF 
Sbjct: 62  TTSVEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFT 117

[Close]

BLAST of Cucsa.327900.2 vs. TAIR10
Match: AT3G02180.1 (AT3G02180.1 SPIRAL1-like3)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-24
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPAD 63
           RGV++G  +SSLGYLFG G   +A A   G       +   T +     +P  T +    
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTT---TTTTTTTDGTGGRPITTTTTTVT 64

Query: 64  ISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            +K+  AG+  S  NNY R++GQN GNF+TDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 65  DNKKTSAGVRGSP-NNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113

[Close]

BLAST of Cucsa.327900.2 vs. TAIR10
Match: AT5G15600.1 (AT5G15600.1 SPIRAL1-like4)

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-22
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASPPAD 63
           RGV+SGGG+SSLGYLFG G++         +      +   T +  A  +P  T +    
Sbjct: 5   RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTT 64

Query: 64  ISK----QIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFG 116
             K    +  AG+  S  NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSL YLFG
Sbjct: 65  GDKNKTEENSAGVRGSP-NNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119

[Close]

BLAST of Cucsa.327900.2 vs. NCBI nr
Match: gi|449452849|ref|XP_004144171.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of Cucsa.327900.2 vs. NCBI nr
Match: gi|659089321|ref|XP_008445444.1| (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP +E KT+SKPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PADI+KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of Cucsa.327900.2 vs. NCBI nr
Match: gi|645277571|ref|XP_008243833.1| (PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 61

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 62  PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 118

[Close]

BLAST of Cucsa.327900.2 vs. NCBI nr
Match: gi|596288440|ref|XP_007225937.1| (hypothetical protein PRUPE_ppa012233mg [Prunus persica])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 61  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 120

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 121 PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 177

[Close]

BLAST of Cucsa.327900.2 vs. NCBI nr
Match: gi|645277568|ref|XP_008243832.1| (PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAA--TASP 62
           GRGVSSGGGQSSLGYLFG G+AP   A     QA P P+E + ++    SKP A   A  
Sbjct: 14  GRGVSSGGGQSSLGYLFGSGEAPKPAA--NNTQAAPIPNEGRVVTNEPASKPTAPPPAPE 73

Query: 63  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGG 120
           P DI+KQIPAGIHS+SSNNY+RADGQNTGNFITDRPSTKVH+APGGGSSLDYLFGG GG
Sbjct: 74  PVDITKQIPAGIHSTSSNNYMRADGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGPGG 130

The following BLAST results are available for this feature:

BLAST of Cucsa.327900.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SP1L1_ARATH	2.5e-35	66.38	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1	[more]
SP1L2_ARATH	5.7e-32	61.40	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1	[more]
SP1L1_ORYSJ	8.2e-31	65.52	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=3 SV=1	[more]
SP1L2_ORYSJ	4.1e-30	60.34	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=3 SV=1	[more]
SP1L3_ORYSJ	9.0e-30	62.61	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=3 SV=1	[more]

BLAST of Cucsa.327900.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFN2_CUCSA	9.6e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366520 PE=4 SV=1	[more]
M5XNQ4_PRUPE	2.0e-39	71.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012233mg PE=4 SV=1	[more]
A0A059D7D9_EUCGR	1.1e-37	70.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03146 PE=4 SV=1	[more]
W9QNX4_9ROSA	2.4e-37	68.38	Uncharacterized protein OS=Morus notabilis GN=L484_026438 PE=4 SV=1	[more]
A0A0D2W4F6_GOSRA	4.1e-37	71.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G094900 PE=4 SV=1	[more]

BLAST of Cucsa.327900.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26355.1	1.4e-36	66.38	SPIRAL1-like1	[more]
AT1G69230.1	3.2e-33	61.40	SPIRAL1-like2	[more]
AT2G03680.1	5.6e-30	61.16	spiral1	[more]
AT3G02180.1	6.0e-24	50.44	SPIRAL1-like3	[more]
AT5G15600.1	3.3e-22	48.28	SPIRAL1-like4	[more]

BLAST of Cucsa.327900.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452849\|ref\|XP_004144171.1\|	1.4e-62	100.00	PREDICTED: protein SPIRAL1-like 1 [Cucumis sativus]	[more]
gi\|659089321\|ref\|XP_008445444.1\|	2.2e-60	95.83	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]	[more]
gi\|645277571\|ref\|XP_008243833.1\|	2.8e-39	71.43	PREDICTED: protein SPIRAL1-like 1 isoform X2 [Prunus mume]	[more]
gi\|596288440\|ref\|XP_007225937.1\|	2.8e-39	71.43	hypothetical protein PRUPE_ppa012233mg [Prunus persica]	[more]
gi\|645277568\|ref\|XP_008243832.1\|	2.8e-39	71.43	PREDICTED: protein SPIRAL1-like 1 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.327900	Cucsa.327900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.327900.2	Cucsa.327900.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.327900.2.five_prime_UTR.1	Cucsa.327900.2.five_prime_UTR.1	five_prime_UTR
Cucsa.327900.2.five_prime_UTR.2	Cucsa.327900.2.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.327900.2.CDS.1	Cucsa.327900.2.CDS.1	CDS
Cucsa.327900.2.CDS.2	Cucsa.327900.2.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.327900.2.three_prime_UTR.1	Cucsa.327900.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33403	FAMILY NOT NAMED	coord: 3..116 score: 3.6
None	No IPR available	PANTHER	PTHR33403:SF1	PROTEIN SPIRAL1	coord: 3..116 score: 3.6