Csa6G501230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G501230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 25079399 .. 25079828 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACACTACACCGACTTGTCAGCCTTATCCACAATCATACCTCAATCTGAATATAAATTATGTCATCCTCCTAAAGGGGTCTCCTCAAAATCAACTAAGAGGGAGAGTTGAAAAATCACAGCCATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGAGTTCCTCTATTGGGTTTATATATATATATATATATTGT

mRNA sequence

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Protein sequence

MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA*

Homology

[Close]

BLAST of Csa6G501230 vs. TrEMBL
Match: A0A0A0KK75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Csa6G501230 vs. TrEMBL
Match: M5WDP7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRR-----GQEMIRQELQELGSSGVSISATATSIRMKKMMEM 60
          MADIAILVAEEYERR KN R+     G   +  +L         +S  A S+  K   E 
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFS------CVSVMAHSLHKKIGQE- 60

Query: 61 AKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
                  +M    WV EPKSQIG  AS GFFSA
Sbjct: 61 --------KMEFVKWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of Csa6G501230 vs. TrEMBL
Match: B9T6Q9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIA+LVAEEYERR KN R+       +  E+  + VS  + AT     K M+      
Sbjct: 1  MADIAMLVAEEYERRVKNSRKAS----ADNGEVEINWVSCVSLATQSLKNKFMQ------ 60

Query: 61 YSAEMSEF--NWVFEPKSQIGRAASTGFFSA 90
             E  E    WV EPK+QIG AAS GFFSA
Sbjct: 61 ---ENIELIAKWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of Csa6G501230 vs. TrEMBL
Match: A0A068TYM4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036435001 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRG--QEMIRQELQELGSSGVSISATATSIRMKKMMEMAKK 60
          MADIA+LVAEEYERR KN R+   Q    +E++        +S +A  + ++    M KK
Sbjct: 1  MADIAMLVAEEYERRVKNSRKSTHQGANDEEIEYF----PHVSVSAKRVDLESSFCMMKK 60

Query: 61 HNYSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
               +M     VFEPKS IG AAS  FFSA
Sbjct: 61 EIGGEKMERVKRVFEPKSDIGVAASKCFFSA 87

[Close]

BLAST of Csa6G501230 vs. TrEMBL
Match: D6BRD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-06
Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKK-H 60
          MADIAILVAEEYERR KN R+G                  S   T I +  +  ++++  
Sbjct: 1  MADIAILVAEEYERRVKNSRKG------------------SGADTKIEVNWVSSISERVK 60

Query: 61 NYSAEMSEF---NWVFEPKSQIGRAASTGFFSA 90
          N+  E        W  +PK+QIG AAS GFFSA
Sbjct: 61 NFKVEQENLEIVKWFLDPKTQIGVAASNGFFSA 75

[Close]

BLAST of Csa6G501230 vs. NCBI nr
Match: gi|778719285|ref|XP_011657992.1| (PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 5.0e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Csa6G501230 vs. NCBI nr
Match: gi|659080172|ref|XP_008440649.1| (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTK+PRR QEM+RQELQ+LGS GVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGS-GVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of Csa6G501230 vs. NCBI nr
Match: gi|645219202|ref|XP_008234569.1| (PREDICTED: uncharacterized protein LOC103333497 [Prunus mume])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRR-----GQEMIRQELQELGSSGVSISATATSIRMKKMMEM 60
          MADIAILVAEEYERR KN R+     G   +  +L         +S  A S+  K   E 
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFS------CVSVMAHSLHRKIGQE- 60

Query: 61 AKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
                  +M    WV EPKSQIG  AS GFFSA
Sbjct: 61 --------KMEFVKWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of Csa6G501230 vs. NCBI nr
Match: gi|255586588|ref|XP_002533928.1| (PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIA+LVAEEYERR KN R+       +  E+  + VS  + AT     K M+      
Sbjct: 1  MADIAMLVAEEYERRVKNSRKAS----ADNGEVEINWVSCVSLATQSLKNKFMQ------ 60

Query: 61 YSAEMSEF--NWVFEPKSQIGRAASTGFFSA 90
             E  E    WV EPK+QIG AAS GFFSA
Sbjct: 61 ---ENIELIAKWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of Csa6G501230 vs. NCBI nr
Match: gi|595831139|ref|XP_007206209.1| (hypothetical protein PRUPE_ppa015169mg [Prunus persica])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 42/94 (44.68%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 1  MADIAILVAEEYERRTKNPRR-----GQEMIRQELQELGSSGVSISATATSIRMKKMMEM 60
          MADIAILVAEEYERR KN R+     G   +  +L         +S  A S+  K   E 
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFS------CVSVMAHSLHKKIGQE- 60

Query: 61 AKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
                  +M    WV EPKSQIG  AS GFFSA
Sbjct: 61 --------KMEFVKWVMEPKSQIGLEASNGFFSA 79

The following BLAST results are available for this feature:

BLAST of Csa6G501230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75_CUCSA	3.5e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1	[more]
M5WDP7_PRUPE	1.2e-06	44.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1	[more]
B9T6Q9_RICCO	1.2e-06	46.15	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1	[more]
A0A068TYM4_COFCA	1.6e-06	43.96	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036435001 PE=4 SV=1	[more]
D6BRD5_JATCU	3.6e-06	40.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1	[more]

BLAST of Csa6G501230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778719285\|ref\|XP_011657992.1\|	5.0e-41	100.00	PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus]	[more]
gi\|659080172\|ref\|XP_008440649.1\|	2.2e-33	88.76	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo]	[more]
gi\|645219202\|ref\|XP_008234569.1\|	1.8e-06	44.68	PREDICTED: uncharacterized protein LOC103333497 [Prunus mume]	[more]
gi\|255586588\|ref\|XP_002533928.1\|	1.8e-06	46.15	PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis]	[more]
gi\|595831139\|ref\|XP_007206209.1\|	1.8e-06	44.68	hypothetical protein PRUPE_ppa015169mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU104969	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G501230.1	Csa6G501230.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU104969	CU104969	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	FAMILY NOT NAMED	coord: 2..89 score: 3.5
None	No IPR available	PANTHER	PTHR36067:SF1	SUBFAMILY NOT NAMED	coord: 2..89 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G501230	Cla014173	Watermelon (97103) v1	cuwmB500
Csa6G501230	MELO3C007786	Melon (DHL92) v3.5.1	cumeB503
Csa6G501230	ClCG01G019080	Watermelon (Charleston Gray)	cuwcgB432
Csa6G501230	Lsi01G007300	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G501230	MELO3C007786.2	Melon (DHL92) v3.6.1	cumedB483
Csa6G501230	Cla97C01G018540	Watermelon (97103) v2	cuwmbB412
Csa6G501230	Bhi03G000947	Wax gourd	cuwgoB620
Csa6G501230	CSPI06G30540	Wild cucumber (PI 183967)	cpicuB313
Csa6G501230	Cucsa.104690	Cucumber (Gy14) v1	cgycuB121
Csa6G501230	CmaCh03G007900	Cucurbita maxima (Rimu)	cmacuB681
Csa6G501230	CmaCh07G005180	Cucurbita maxima (Rimu)	cmacuB877
Csa6G501230	CmoCh07G005130	Cucurbita moschata (Rifu)	cmocuB865
Csa6G501230	CmoCh03G008240	Cucurbita moschata (Rifu)	cmocuB670
Csa6G501230	Cp4.1LG10g00970	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G501230	Cp4.1LG19g09570	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G501230	Carg16021	Silver-seed gourd	carcuB0776
Csa6G501230	Carg00675	Silver-seed gourd	carcuB0441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G501230	Cucumber (Gy14) v2	cgybcuB281