CmoCh07G005130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC02g43600D protein
Location	Cmo_Chr07 : 2344405 .. 2344653 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATATTGCCATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAACAGAAGGCGGCGGCAGAGGTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGCCCAACCAAATGAATTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

mRNA sequence

ATGGCGGATATTGCCATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAACAGAAGGCGGCGGCAGAGGTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGCCCAACCAAATGAATTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

Coding sequence (CDS)

ATGGCGGATATTGCCATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAACAGAAGGCGGCGGCAGAGGTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGCCCAACCAAATGAATTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

Homology

[Close]

BLAST of CmoCh07G005130 vs. TrEMBL
Match: A0A0A0KK75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAA-EVQDL-VSGVSISATAS--RVKKMMELELE-- 60
          MADIAILVAEEYERR KNPR+ Q+    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -LAQPNEFKWVFEPKSQIGRAASTGFFSA 83
            A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CmoCh07G005130 vs. TrEMBL
Match: B9T6Q9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQ-DLVSGVSISATASRVKKMMELELELAQPN 60
          MADIA+LVAEEYERR+KN R+      EV+ + VS VS+ AT S   K M+  +EL    
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSL-ATQSLKNKFMQENIELIA-- 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 83
            KWV EPK+QIG AAS GFFSA
Sbjct: 61 --KWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of CmoCh07G005130 vs. TrEMBL
Match: M5WDP7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-09
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQ---DLVSGVSISATASRVKKMMELELELAQ 60
          MADIAILVAEEYERR+KN R+   A  + Q   DL S VS+ A +   KK+ + ++E   
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLH-KKIGQEKMEFV- 60

Query: 61 PNEFKWVFEPKSQIGRAASTGFFSA 83
              KWV EPKSQIG  AS GFFSA
Sbjct: 61 ----KWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of CmoCh07G005130 vs. TrEMBL
Match: A5AZ35_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024015 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQK-------AAAEVQDLVSGVSISATASRVKKMMELEL 60
          M+DIA+LVAEEYERR+KN ++          AAAE    VS  S+SA A R++    ++ 
Sbjct: 1  MSDIAMLVAEEYERRVKNSKKSGGGGEGGGGAAAEEIGFVS--SVSAIAMRLEGFSWVKK 60

Query: 61 ELAQPNE--FKWVFEPKSQIGRAASTGFFSA 83
           + + N    KWV EPKSQIG AA  GFFSA
Sbjct: 61 AVGEENTEIVKWVLEPKSQIGLAAINGFFSA 89

[Close]

BLAST of CmoCh07G005130 vs. TrEMBL
Match: D6BRD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-07
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQ-DLVSGVSISATASRVK--KMMELELELAQ 60
          MADIAILVAEEYERR+KN R+   A  +++ + VS +S      RVK  K+ +  LE+  
Sbjct: 1  MADIAILVAEEYERRVKNSRKGSGADTKIEVNWVSSIS-----ERVKNFKVEQENLEIV- 60

Query: 61 PNEFKWVFEPKSQIGRAASTGFFSA 83
              KW  +PK+QIG AAS GFFSA
Sbjct: 61 ----KWFLDPKTQIGVAASNGFFSA 75

[Close]

BLAST of CmoCh07G005130 vs. NCBI nr
Match: gi|778719285|ref|XP_011657992.1| (PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAA-EVQDL-VSGVSISATAS--RVKKMMELELE-- 60
          MADIAILVAEEYERR KNPR+ Q+    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -LAQPNEFKWVFEPKSQIGRAASTGFFSA 83
            A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CmoCh07G005130 vs. NCBI nr
Match: gi|659080172|ref|XP_008440649.1| (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-17
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAA-EVQDLVSGVSISATASRV--KKMMELELE--- 60
          MADIAILVAEEYERR K+PR++Q+    E+QDL SGVSISATA+ +  KKMME+      
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 LAQPNEFKWVFEPKSQIGRAASTGFFSA 83
           A+ +EF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CmoCh07G005130 vs. NCBI nr
Match: gi|255586588|ref|XP_002533928.1| (PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQ-DLVSGVSISATASRVKKMMELELELAQPN 60
          MADIA+LVAEEYERR+KN R+      EV+ + VS VS+ AT S   K M+  +EL    
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSL-ATQSLKNKFMQENIELIA-- 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 83
            KWV EPK+QIG AAS GFFSA
Sbjct: 61 --KWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of CmoCh07G005130 vs. NCBI nr
Match: gi|595831139|ref|XP_007206209.1| (hypothetical protein PRUPE_ppa015169mg [Prunus persica])

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-09
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQ---DLVSGVSISATASRVKKMMELELELAQ 60
          MADIAILVAEEYERR+KN R+   A  + Q   DL S VS+ A +   KK+ + ++E   
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLH-KKIGQEKMEFV- 60

Query: 61 PNEFKWVFEPKSQIGRAASTGFFSA 83
              KWV EPKSQIG  AS GFFSA
Sbjct: 61 ----KWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of CmoCh07G005130 vs. NCBI nr
Match: gi|645219202|ref|XP_008234569.1| (PREDICTED: uncharacterized protein LOC103333497 [Prunus mume])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQ---DLVSGVSISATASRVKKMMELELELAQ 60
          MADIAILVAEEYERR+KN R+   A  + Q   DL S VS+ A +   +K+ + ++E   
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLH-RKIGQEKMEFV- 60

Query: 61 PNEFKWVFEPKSQIGRAASTGFFSA 83
              KWV EPKSQIG  AS GFFSA
Sbjct: 61 ----KWVMEPKSQIGLEASNGFFSA 79

The following BLAST results are available for this feature:

BLAST of CmoCh07G005130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G005130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75_CUCSA	1.1e-17	68.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1	[more]
B9T6Q9_RICCO	1.1e-09	56.63	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1	[more]
M5WDP7_PRUPE	5.4e-09	54.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1	[more]
A5AZ35_VITVI	3.0e-07	48.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024015 PE=4 SV=1	[more]
D6BRD5_JATCU	3.9e-07	50.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1	[more]

BLAST of CmoCh07G005130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh07G005130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778719285\|ref\|XP_011657992.1\|	1.6e-17	68.54	PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus]	[more]
gi\|659080172\|ref\|XP_008440649.1\|	6.0e-17	67.05	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo]	[more]
gi\|255586588\|ref\|XP_002533928.1\|	1.6e-09	56.63	PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis]	[more]
gi\|595831139\|ref\|XP_007206209.1\|	7.8e-09	54.12	hypothetical protein PRUPE_ppa015169mg [Prunus persica]	[more]
gi\|645219202\|ref\|XP_008234569.1\|	1.7e-08	52.94	PREDICTED: uncharacterized protein LOC103333497 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G005130.1	CmoCh07G005130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	FAMILY NOT NAMED	coord: 2..82 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G005130	Cucsa.104690	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G005130	CmaCh07G005180	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G005130	CmaCh03G007900	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G005130	Cla014173	Watermelon (97103) v1	cmowmB816
CmoCh07G005130	Csa6G501230	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G005130	MELO3C007786	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G005130	ClCG01G019080	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G005130	CSPI06G30540	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G005130	Lsi01G007300	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G005130	Cp4.1LG10g00970	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G005130	Cp4.1LG19g09570	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G005130	MELO3C007786.2	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G005130	CsaV3_6G045760	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G005130	Cla97C01G018540	Watermelon (97103) v2	cmowmbB849
CmoCh07G005130	Bhi03G000947	Wax gourd	cmowgoB1065
CmoCh07G005130	Carg00675	Silver-seed gourd	carcmoB0554
CmoCh07G005130	Carg16021	Silver-seed gourd	carcmoB1029

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G005130	CmoCh03G008240	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G005130	Cucurbita pepo (Zucchini)	cmocpeB813
CmoCh07G005130	Cucumber (Gy14) v2	cgybcmoB843