Lsi01G007300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G007300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_7
Location	chr01 : 5769726 .. 5769956 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGTGAGAAGCAAGAGCTTCAAGATTTGGCTTCTGGGGTTTCCATTACTGCGATTAGGATGAAGAAGATGATGGAAATGGCAAAACAAAATGCAGAGATGTCGGAATTCAAATGGGTTTTTGAACCCAAATCTCAAATTGGGCGAGCTGCCTCCACTGGATTCTTCTCGGCTTGA

mRNA sequence

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGTGAGAAGCAAGAGCTTCAAGATTTGGCTTCTGGGGTTTCCATTACTGCGATTAGGATGAAGAAGATGATGGAAATGGCAAAACAAAATGCAGAGATGTCGGAATTCAAATGGGTTTTTGAACCCAAATCTCAAATTGGGCGAGCTGCCTCCACTGGATTCTTCTCGGCTTGA

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGTGAGAAGCAAGAGCTTCAAGATTTGGCTTCTGGGGTTTCCATTACTGCGATTAGGATGAAGAAGATGATGGAAATGGCAAAACAAAATGCAGAGATGTCGGAATTCAAATGGGTTTTTGAACCCAAATCTCAAATTGGGCGAGCTGCCTCCACTGGATTCTTCTCGGCTTGA

Protein sequence

MADIAILVAEEYERRMKNPSEKQELQDLASGVSITAIRMKKMMEMAKQNAEMSEFKWVFEPKSQIGRAASTGFFSA

Homology

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BLAST of Lsi01G007300 vs. TrEMBL
Match: A0A0A0KK75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.5e-21
Identity = 66/89 (74.16%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPSE-----KQELQDL-ASGVSI----TAIRMKKMMEMAKQN- 60
          MADIAILVAEEYERR KNP       +QELQ+L +SGVSI    T+IRMKKMMEMAK++ 
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 --AEMSEFKWVFEPKSQIGRAASTGFFSA 77
            AEMSEF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Lsi01G007300 vs. TrEMBL
Match: M5WDP7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-08
Identity = 44/83 (53.01%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNP-------SEKQELQDLASGVSITAIRMKKMMEMAKQNAEMS 60
          MADIAILVAEEYERR+KN         + Q   DL S VS+ A  + K +   K    M 
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLHKKIGQEK----ME 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 77
            KWV EPKSQIG  AS GFFSA
Sbjct: 61 FVKWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of Lsi01G007300 vs. TrEMBL
Match: B9T6Q9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNP----SEKQELQ-DLASGVSITAIRMKKMMEMAKQNAEMSEF 60
          MADIA+LVAEEYERR+KN     ++  E++ +  S VS+    +K   +  ++N E+   
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSLATQSLKN--KFMQENIELIA- 60

Query: 61 KWVFEPKSQIGRAASTGFFSA 77
          KWV EPK+QIG AAS GFFSA
Sbjct: 61 KWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of Lsi01G007300 vs. TrEMBL
Match: D6BRD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-06
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPSEKQELQDLASGVSITAIRMKKMMEMAKQNAEMSEFKWVFE 60
          MADIAILVAEEYERR+KN S K    D    V+  +   +++     +   +   KW  +
Sbjct: 1  MADIAILVAEEYERRVKN-SRKGSGADTKIEVNWVSSISERVKNFKVEQENLEIVKWFLD 60

Query: 61 PKSQIGRAASTGFFSA 77
          PK+QIG AAS GFFSA
Sbjct: 61 PKTQIGVAASNGFFSA 75

[Close]

BLAST of Lsi01G007300 vs. TrEMBL
Match: A5AZ35_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024015 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-06
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPSEK-----------QELQDLASGVSITAIRMKKMMEMAKQN 60
          M+DIA+LVAEEYERR+KN  +             E     S VS  A+R++    + K  
Sbjct: 1  MSDIAMLVAEEYERRVKNSKKSGGGGEGGGGAAAEEIGFVSSVSAIAMRLEGFSWVKKAV 60

Query: 61 AEMSE--FKWVFEPKSQIGRAASTGFFSA 77
           E +    KWV EPKSQIG AA  GFFSA
Sbjct: 61 GEENTEIVKWVLEPKSQIGLAAINGFFSA 89

[Close]

BLAST of Lsi01G007300 vs. NCBI nr
Match: gi|778719285|ref|XP_011657992.1| (PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 66/89 (74.16%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPSE-----KQELQDL-ASGVSI----TAIRMKKMMEMAKQN- 60
          MADIAILVAEEYERR KNP       +QELQ+L +SGVSI    T+IRMKKMMEMAK++ 
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 --AEMSEFKWVFEPKSQIGRAASTGFFSA 77
            AEMSEF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Lsi01G007300 vs. NCBI nr
Match: gi|659080172|ref|XP_008440649.1| (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPSE-----KQELQDLASGVSI----TAIRMKKMMEMAKQN-- 60
          MADIAILVAEEYERR K+P       +QELQDL SGVSI    T+I MKKMMEMAK+N  
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 -AEMSEFKWVFEPKSQIGRAASTGFFSA 77
           AE+SEF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of Lsi01G007300 vs. NCBI nr
Match: gi|595831139|ref|XP_007206209.1| (hypothetical protein PRUPE_ppa015169mg [Prunus persica])

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-08
Identity = 44/83 (53.01%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNP-------SEKQELQDLASGVSITAIRMKKMMEMAKQNAEMS 60
          MADIAILVAEEYERR+KN         + Q   DL S VS+ A  + K +   K    M 
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLHKKIGQEK----ME 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 77
            KWV EPKSQIG  AS GFFSA
Sbjct: 61 FVKWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of Lsi01G007300 vs. NCBI nr
Match: gi|645219202|ref|XP_008234569.1| (PREDICTED: uncharacterized protein LOC103333497 [Prunus mume])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNP-------SEKQELQDLASGVSITAIRMKKMMEMAKQNAEMS 60
          MADIAILVAEEYERR+KN         + Q   DL S VS+ A  + + +   K    M 
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLHRKIGQEK----ME 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 77
            KWV EPKSQIG  AS GFFSA
Sbjct: 61 FVKWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of Lsi01G007300 vs. NCBI nr
Match: gi|255586588|ref|XP_002533928.1| (PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNP----SEKQELQ-DLASGVSITAIRMKKMMEMAKQNAEMSEF 60
          MADIA+LVAEEYERR+KN     ++  E++ +  S VS+    +K   +  ++N E+   
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSLATQSLKN--KFMQENIELIA- 60

Query: 61 KWVFEPKSQIGRAASTGFFSA 77
          KWV EPK+QIG AAS GFFSA
Sbjct: 61 KWVLEPKTQIGLAASNGFFSA 78

The following BLAST results are available for this feature:

BLAST of Lsi01G007300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G007300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75_CUCSA	7.5e-21	74.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1	[more]
M5WDP7_PRUPE	5.6e-08	53.01	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1	[more]
B9T6Q9_RICCO	1.8e-06	49.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1	[more]
D6BRD5_JATCU	3.1e-06	47.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1	[more]
A5AZ35_VITVI	8.9e-06	44.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024015 PE=4 SV=1	[more]

BLAST of Lsi01G007300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G007300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778719285\|ref\|XP_011657992.1\|	1.1e-20	74.16	PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus]	[more]
gi\|659080172\|ref\|XP_008440649.1\|	1.2e-19	72.73	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo]	[more]
gi\|595831139\|ref\|XP_007206209.1\|	8.0e-08	53.01	hypothetical protein PRUPE_ppa015169mg [Prunus persica]	[more]
gi\|645219202\|ref\|XP_008234569.1\|	1.8e-07	51.81	PREDICTED: uncharacterized protein LOC103333497 [Prunus mume]	[more]
gi\|255586588\|ref\|XP_002533928.1\|	2.6e-06	49.38	PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G007300.1	Lsi01G007300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	FAMILY NOT NAMED	coord: 2..76 score: 1.9
None	No IPR available	PANTHER	PTHR36067:SF1	SUBFAMILY NOT NAMED	coord: 2..76 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G007300	Csa6G501230	Cucumber (Chinese Long) v2	culsiB434
Lsi01G007300	CSPI06G30540	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G007300	Cucsa.104690	Cucumber (Gy14) v1	cgylsiB125
Lsi01G007300	CmaCh07G005180	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G007300	CmaCh03G007900	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G007300	CmoCh03G008240	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G007300	CmoCh07G005130	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G007300	Cla014173	Watermelon (97103) v1	lsiwmB144
Lsi01G007300	MELO3C007786	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G007300	ClCG01G019080	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G007300	MELO3C007786.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G007300	Cla97C01G018540	Watermelon (97103) v2	lsiwmbB115
Lsi01G007300	Bhi03G000947	Wax gourd	lsiwgoB181
Lsi01G007300	Cp4.1LG19g09570	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G007300	Cp4.1LG10g00970	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G007300	Carg16021	Silver-seed gourd	carlsiB693
Lsi01G007300	Carg00675	Silver-seed gourd	carlsiB364
Lsi01G007300	CsaV3_6G045760	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G007300	Cucumber (Gy14) v2	cgyblsiB398