CmaCh07G005180 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G005180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_7
Location	Cma_Chr07 : 2242855 .. 2243691 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAATAAAATAAAATAAATTACTCCACCTTTTTTTTATTTGTATTATACAGTCTACACCGACTTGTCGGCCTTATCCACAATCATCCCCCACTCTGTTAATATATTCCTCTCTTCTTCCCAAATGGGTCTCTGCAAAATCAACTAAGAAAAGCTTCGAAGATCACACAGCCATGGCGGATATTGCTATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAAGAGAAGGCGGCAGCAGAGGTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGCCGAACGAAATGAATTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGAGTTCGTCTTCTTTGTATTATACTGTAAATCTTTCCAATTTGTGCATTGTTTGTAATCTTATCCTTCTTATACTTTGGATTTTCTCTTTTAAGGCTGCTTTCTCACTCTGCCTATGCTGGTTCGGCGACTCCTTCTTGTGGATACCCGAGTTGATGATCCTTTTCATTGCACTAAAACACGAACCATTCCATTTGAAAGTCTACTTTAAAATGACGATTGTAAATTATTTCATGATTCAATCATACTGACTTTTCTAAATTAAATTTTAAACTTTTTAAAGACAGAATATACTCGAACATATCACAGATGCTCAAGTCAATCTTAATCCTAGACATTCAGCAACGTCCTCAAACGCTTTCACATGTTCAGCCTGAGCTGCAAGTAGAAATACGCATATGGGATTGCCATAGCCATC

mRNA sequence

ATACAATAAAATAAAATAAATTACTCCACCTTTTTTTTATTTGTATTATACAGTCTACACCGACTTGTCGGCCTTATCCACAATCATCCCCCACTCTGTTAATATATTCCTCTCTTCTTCCCAAATGGGTCTCTGCAAAATCAACTAAGAAAAGCTTCGAAGATCACACAGCCATGGCGGATATTGCTATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAAGAGAAGGCGGCAGCAGAGGTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGCCGAACGAAATGAATTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGAGCTGCTTTCTCACTCTGCCTATGCTGGTTCGGCGACTCCTTCTTGTGGATACCCGAGTTGATGATCCTTTTCATTGCACTAAAACACGAACCATTCCATTTGAAAGTCTACTTTAAAATGACGATTGTAAATTATTTCATGATTCAATCATACTGACTTTTCTAAATTAAATTTTAAACTTTTTAAAGACAGAATATACTCGAACATATCACAGATGCTCAAGTCAATCTTAATCCTAGACATTCAGCAACGTCCTCAAACGCTTTCACATGTTCAGCCTGAGCTGCAAGTAGAAATACGCATATGGGATTGCCATAGCCATC

Coding sequence (CDS)

ATGGCGGATATTGCTATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAAGAGAAGGCGGCAGCAGAGGTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGCCGAACGAAATGAATTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

Protein sequence

MADIAILVAEEYERRMKNPRQEEKAAAEVQDLVSGVSISATASRVKKMMELELELAERNEFKWVFEPKSQIGRAASTGFFSA

Homology

[Close]

BLAST of CmaCh07G005180 vs. TrEMBL
Match: A0A0A0KK75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-18
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQ-EEKAAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60
          MADIAILVAEEYERR KNPR+ +E    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -LAERNEFKWVFEPKSQIGRAASTGFFSA 83
            AE +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CmaCh07G005180 vs. TrEMBL
Match: B9T6Q9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQ-DLVSGVSISATASRVKKMMELELELAERN 60
          MADIA+LVAEEYERR+KN R+      EV+ + VS VS+ AT S   K M+  +EL    
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSL-ATQSLKNKFMQENIELIA-- 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 83
            KWV EPK+QIG AAS GFFSA
Sbjct: 61 --KWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of CmaCh07G005180 vs. TrEMBL
Match: M5WDP7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-09
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQ---DLVSGVSISATASRVKKMMELELELAE 60
          MADIAILVAEEYERR+KN R+   A  + Q   DL S VS+ A +   KK+ + ++E   
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLH-KKIGQEKMEFV- 60

Query: 61 RNEFKWVFEPKSQIGRAASTGFFSA 83
              KWV EPKSQIG  AS GFFSA
Sbjct: 61 ----KWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of CmaCh07G005180 vs. TrEMBL
Match: A5AZ35_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024015 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEK-------AAAEVQDLVSGVSISATASRVKKMMELEL 60
          M+DIA+LVAEEYERR+KN ++          AAAE    VS  S+SA A R++    ++ 
Sbjct: 1  MSDIAMLVAEEYERRVKNSKKSGGGGEGGGGAAAEEIGFVS--SVSAIAMRLEGFSWVKK 60

Query: 61 ELAERNE--FKWVFEPKSQIGRAASTGFFSA 83
           + E N    KWV EPKSQIG AA  GFFSA
Sbjct: 61 AVGEENTEIVKWVLEPKSQIGLAAINGFFSA 89

[Close]

BLAST of CmaCh07G005180 vs. TrEMBL
Match: D6BRD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-07
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQ-DLVSGVSISATASRVK--KMMELELELAE 60
          MADIAILVAEEYERR+KN R+   A  +++ + VS +S      RVK  K+ +  LE+  
Sbjct: 1  MADIAILVAEEYERRVKNSRKGSGADTKIEVNWVSSIS-----ERVKNFKVEQENLEIV- 60

Query: 61 RNEFKWVFEPKSQIGRAASTGFFSA 83
              KW  +PK+QIG AAS GFFSA
Sbjct: 61 ----KWFLDPKTQIGVAASNGFFSA 75

[Close]

BLAST of CmaCh07G005180 vs. NCBI nr
Match: gi|778719285|ref|XP_011657992.1| (PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQ-EEKAAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60
          MADIAILVAEEYERR KNPR+ +E    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -LAERNEFKWVFEPKSQIGRAASTGFFSA 83
            AE +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CmaCh07G005180 vs. NCBI nr
Match: gi|659080172|ref|XP_008440649.1| (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 7.8e-17
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQE-EKAAAEVQDLVSGVSISATASRV--KKMMELELE--- 60
          MADIAILVAEEYERR K+PR++ E    E+QDL SGVSISATA+ +  KKMME+      
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 LAERNEFKWVFEPKSQIGRAASTGFFSA 83
           AE +EF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CmaCh07G005180 vs. NCBI nr
Match: gi|255586588|ref|XP_002533928.1| (PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQ-DLVSGVSISATASRVKKMMELELELAERN 60
          MADIA+LVAEEYERR+KN R+      EV+ + VS VS+ AT S   K M+  +EL    
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSL-ATQSLKNKFMQENIELIA-- 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 83
            KWV EPK+QIG AAS GFFSA
Sbjct: 61 --KWVLEPKTQIGLAASNGFFSA 78

[Close]

BLAST of CmaCh07G005180 vs. NCBI nr
Match: gi|595831139|ref|XP_007206209.1| (hypothetical protein PRUPE_ppa015169mg [Prunus persica])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQ---DLVSGVSISATASRVKKMMELELELAE 60
          MADIAILVAEEYERR+KN R+   A  + Q   DL S VS+ A +   KK+ + ++E   
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLH-KKIGQEKMEFV- 60

Query: 61 RNEFKWVFEPKSQIGRAASTGFFSA 83
              KWV EPKSQIG  AS GFFSA
Sbjct: 61 ----KWVMEPKSQIGLEASNGFFSA 79

[Close]

BLAST of CmaCh07G005180 vs. NCBI nr
Match: gi|645219202|ref|XP_008234569.1| (PREDICTED: uncharacterized protein LOC103333497 [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQ---DLVSGVSISATASRVKKMMELELELAE 60
          MADIAILVAEEYERR+KN R+   A  + Q   DL S VS+ A +   +K+ + ++E   
Sbjct: 1  MADIAILVAEEYERRVKNARKAGSAEGDHQLETDLFSCVSVMAHSLH-RKIGQEKMEFV- 60

Query: 61 RNEFKWVFEPKSQIGRAASTGFFSA 83
              KWV EPKSQIG  AS GFFSA
Sbjct: 61 ----KWVMEPKSQIGLEASNGFFSA 79

The following BLAST results are available for this feature:

BLAST of CmaCh07G005180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75_CUCSA	3.8e-18	69.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501230 PE=4 SV=1	[more]
B9T6Q9_RICCO	1.4e-09	56.63	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1	[more]
M5WDP7_PRUPE	7.1e-09	54.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015169mg PE=4 SV=1	[more]
A5AZ35_VITVI	1.7e-07	49.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024015 PE=4 SV=1	[more]
D6BRD5_JATCU	5.1e-07	50.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09362 PE=2 SV=1	[more]

BLAST of CmaCh07G005180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778719285\|ref\|XP_011657992.1\|	5.4e-18	69.66	PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus]	[more]
gi\|659080172\|ref\|XP_008440649.1\|	7.8e-17	68.18	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo]	[more]
gi\|255586588\|ref\|XP_002533928.1\|	2.1e-09	56.63	PREDICTED: uncharacterized protein LOC8263583 [Ricinus communis]	[more]
gi\|595831139\|ref\|XP_007206209.1\|	1.0e-08	54.12	hypothetical protein PRUPE_ppa015169mg [Prunus persica]	[more]
gi\|645219202\|ref\|XP_008234569.1\|	2.3e-08	52.94	PREDICTED: uncharacterized protein LOC103333497 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G005180.1	CmaCh07G005180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	FAMILY NOT NAMED	coord: 2..82 score: 1.4
None	No IPR available	PANTHER	PTHR36067:SF1	SUBFAMILY NOT NAMED	coord: 2..82 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G005180	Cucsa.104690	Cucumber (Gy14) v1	cgycmaB0235
CmaCh07G005180	Cla014173	Watermelon (97103) v1	cmawmB826
CmaCh07G005180	Csa6G501230	Cucumber (Chinese Long) v2	cmacuB877
CmaCh07G005180	MELO3C007786	Melon (DHL92) v3.5.1	cmameB809
CmaCh07G005180	ClCG01G019080	Watermelon (Charleston Gray)	cmawcgB754
CmaCh07G005180	CSPI06G30540	Wild cucumber (PI 183967)	cmacpiB893
CmaCh07G005180	CmoCh03G008240	Cucurbita moschata (Rifu)	cmacmoB858
CmaCh07G005180	CmoCh07G005130	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G005180	Lsi01G007300	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G005180	Cp4.1LG10g00970	Cucurbita pepo (Zucchini)	cmacpeB866
CmaCh07G005180	Cp4.1LG19g09570	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G005180	MELO3C007786.2	Melon (DHL92) v3.6.1	cmamedB907
CmaCh07G005180	CsaV3_6G045760	Cucumber (Chinese Long) v3	cmacucB1035
CmaCh07G005180	Cla97C01G018540	Watermelon (97103) v2	cmawmbB875
CmaCh07G005180	Bhi03G000947	Wax gourd	cmawgoB1072
CmaCh07G005180	Carg00675	Silver-seed gourd	carcmaB0571
CmaCh07G005180	Carg16021	Silver-seed gourd	carcmaB1056

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh07G005180	CmaCh03G007900	Cucurbita maxima (Rimu)	cmacmaB523

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G005180	Cucurbita pepo (Zucchini)	cmacpeB876
CmaCh07G005180	Cucumber (Gy14) v2	cgybcmaB861
CmaCh07G005180	Silver-seed gourd	carcmaB1289
CmaCh07G005180	Silver-seed gourd	carcmaB1415
CmaCh07G005180	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh07G005180	Melon (DHL92) v3.5.1	cmameB796