Carg00675 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00675
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_014 : 935863 .. 936114 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATATTGCAATTCTTGTTGCAGAGGAATACGAGAGAAGGATGAAGAATCCAAGGCAAGCGCAGGAGACGCAAAAGCTTGAAGATTTGAGTTCTGGGGTTTCCATCTCTGCAACTGCTTCGGCGATTAGGATGAAGAAGATGATGGAAATAGCAATACAAAATGCTGAGATGACGGAATTCAAATGGGTTTTCGAACCCAAATCCCAAATTGGCCGAGCCGCTTCCACCGGATTCTTCTCCGCCTGA

mRNA sequence

ATGGCGGATATTGCAATTCTTGTTGCAGAGGAATACGAGAGAAGGATGAAGAATCCAAGGCAAGCGCAGGAGACGCAAAAGCTTGAAGATTTGAGTTCTGGGGTTTCCATCTCTGCAACTGCTTCGGCGATTAGGATGAAGAAGATGATGGAAATAGCAATACAAAATGCTGAGATGACGGAATTCAAATGGGTTTTCGAACCCAAATCCCAAATTGGCCGAGCCGCTTCCACCGGATTCTTCTCCGCCTGA

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTTGCAGAGGAATACGAGAGAAGGATGAAGAATCCAAGGCAAGCGCAGGAGACGCAAAAGCTTGAAGATTTGAGTTCTGGGGTTTCCATCTCTGCAACTGCTTCGGCGATTAGGATGAAGAAGATGATGGAAATAGCAATACAAAATGCTGAGATGACGGAATTCAAATGGGTTTTCGAACCCAAATCCCAAATTGGCCGAGCCGCTTCCACCGGATTCTTCTCCGCCTGA

Protein sequence

MADIAILVAEEYERRMKNPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEMTEFKWVFEPKSQIGRAASTGFFSA

Homology

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BLAST of Carg00675 vs. NCBI nr
Match: XP_011657992.1 (PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical protein Csa_6G501230 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQE--TQKLEDL-SSGVSISATASAIRMKKMMEIAIQ-- 60
          MADIAILVAEEYERR KNPR+ QE   Q+L++L SSGVSISATA++IRMKKMME+A +  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -NAEMTEFKWVFEPKSQIGRAASTGFFSA 84
           +AEM+EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Carg00675 vs. NCBI nr
Match: XP_023003555.1 (uncharacterized protein LOC111497122 [Cucurbita maxima])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQE-TQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEM 60
          MADIAILVAEEYERRMKNPRQ ++   +++DL SGVSISATAS  R+KKMME+ ++ AE 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQDLVSGVSISATAS--RVKKMMELELELAER 60

Query: 61 TEFKWVFEPKSQIGRAASTGFFSA 84
           EFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 NEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Carg00675 vs. NCBI nr
Match: XP_022962826.1 (uncharacterized protein LOC111463202 [Cucurbita moschata])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQE-TQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEM 60
          MADIAILVAEEYERRMKNPRQ Q+   +++DL SGVSISATAS  R+KKMME+ ++ A+ 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQDLVSGVSISATAS--RVKKMMELELELAQP 60

Query: 61 TEFKWVFEPKSQIGRAASTGFFSA 84
           EFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 NEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Carg00675 vs. NCBI nr
Match: XP_016899241.1 (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQE--TQKLEDLSSGVSISATASAIRMKKMMEIAIQN-- 60
          MADIAILVAEEYERR K+PR+ QE   Q+L+DL SGVSISATA++I MKKMME+A +N  
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 -AEMTEFKWVFEPKSQIGRAASTGFFSA 84
           AE++EF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of Carg00675 vs. NCBI nr
Match: XP_022133051.1 (uncharacterized protein LOC111005739 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNP-RQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEM 60
          MADIAILVAEEYERRMKNP  QA++ Q+++  +SGVSISATA+  RMK+M+++   NA  
Sbjct: 1  MADIAILVAEEYERRMKNPGLQAKQKQEIDGFASGVSISATATTGRMKQMLQLGKPNA-- 60

Query: 61 TEFKWVFEPKSQIGRAASTGFFSA 84
           +FKWV EPKSQIGRAAS GFFSA
Sbjct: 61 -DFKWVSEPKSQIGRAASAGFFSA 81

[Close]

BLAST of Carg00675 vs. TAIR10
Match: AT5G65207.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 5.6e-05
Identity = 33/83 (39.76%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEMT 60
          MADIAILVAEEYERRMK+      +  +E     +          +   M IA    ++ 
Sbjct: 1  MADIAILVAEEYERRMKHTTVGSRSSPVEFDWWKI----------IPAKMTIAFDKMKIE 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 84
            K  FE KS+   A S GFFSA
Sbjct: 61 SLKKNFEAKSEFALAISHGFFSA 73

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BLAST of Carg00675 vs. TrEMBL
Match: tr|A0A0A0KK75|A0A0A0KK75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-23
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQE--TQKLEDL-SSGVSISATASAIRMKKMMEIAIQ-- 60
          MADIAILVAEEYERR KNPR+ QE   Q+L++L SSGVSISATA++IRMKKMME+A +  
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 -NAEMTEFKWVFEPKSQIGRAASTGFFSA 84
           +AEM+EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Carg00675 vs. TrEMBL
Match: tr|A0A1S4DTC5|A0A1S4DTC5_CUCME (uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQE--TQKLEDLSSGVSISATASAIRMKKMMEIAIQN-- 60
          MADIAILVAEEYERR K+PR+ QE   Q+L+DL SGVSISATA++I MKKMME+A +N  
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNNY 60

Query: 61 -AEMTEFKWVFEPKSQIGRAASTGFFSA 84
           AE++EF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 SAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of Carg00675 vs. TrEMBL
Match: tr|A0A2P4L037|A0A2P4L037_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_59495 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEMT 60
          MADIAILVAEEYERR+K+ R+A   +   +    + I + AS++ ++  ++  I N +M 
Sbjct: 1  MADIAILVAEEYERRVKDARKAGGAKGEYE----IDIVSYASSLALR--VKTKIGNQKME 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 84
           FKWV EPK+QIG AAS GFFSA
Sbjct: 61 LFKWVLEPKTQIGLAASCGFFSA 77

[Close]

BLAST of Carg00675 vs. TrEMBL
Match: tr|A0A2C9UWH5|A0A2C9UWH5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G139700 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEMT 60
          MADIAILVAEEYERR+KN R+  +    E +     +S  A  ++ K  + +A +N E+ 
Sbjct: 1  MADIAILVAEEYERRVKNSRKLSKASDSE-MEVVNWVSFLAQNVKDKVRVRVAEENIEIP 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 84
            KW+ EPKSQ+G AAS GFFSA
Sbjct: 61 --KWILEPKSQVGVAASNGFFSA 80

[Close]

BLAST of Carg00675 vs. TrEMBL
Match: tr|B9T6Q9|B9T6Q9_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0145330 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEMT 60
          MADIA+LVAEEYERR+KN R+A       +++    +S    +++ K M E    N E+ 
Sbjct: 1  MADIAMLVAEEYERRVKNSRKASADNGEVEINWVSCVSLATQSLKNKFMQE----NIELI 60

Query: 61 EFKWVFEPKSQIGRAASTGFFSA 84
            KWV EPK+QIG AAS GFFSA
Sbjct: 61 A-KWVLEPKTQIGLAASNGFFSA 78

The following BLAST results are available for this feature:

BLAST of Carg00675 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657992.1	4.9e-23	76.40	PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hy...	[more]
XP_023003555.1	1.1e-22	76.19	uncharacterized protein LOC111497122 [Cucurbita maxima]	[more]
XP_022962826.1	1.4e-22	76.19	uncharacterized protein LOC111463202 [Cucurbita moschata]	[more]
XP_016899241.1	2.1e-21	73.86	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo]	[more]
XP_022133051.1	1.6e-18	67.86	uncharacterized protein LOC111005739 [Momordica charantia]	[more]

BLAST of Carg00675 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65207.1	5.6e-05	39.76	unknown protein	[more]

BLAST of Carg00675 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00675 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KK75\|A0A0A0KK75_CUCSA	3.3e-23	76.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1	[more]
tr\|A0A1S4DTC5\|A0A1S4DTC5_CUCME	1.4e-21	73.86	uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=...	[more]
tr\|A0A2P4L037\|A0A2P4L037_QUESU	2.3e-08	50.60	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_59495 PE=4 SV=1	[more]
tr\|A0A2C9UWH5\|A0A2C9UWH5_MANES	2.3e-08	49.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G139700 PE=4 SV=...	[more]
tr\|B9T6Q9\|B9T6Q9_RICCO	5.0e-08	49.40	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0145330 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00675-RA	Carg00675-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	FAMILY NOT NAMED	coord: 1..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00675	Cla014173	Watermelon (97103) v1	carwmB0407
Carg00675	Csa6G501230	Cucumber (Chinese Long) v2	carcuB0441
Carg00675	MELO3C007786	Melon (DHL92) v3.5.1	carmeB0414
Carg00675	ClCG01G019080	Watermelon (Charleston Gray)	carwcgB0397
Carg00675	CSPI06G30540	Wild cucumber (PI 183967)	carcpiB0446
Carg00675	Cucsa.104690	Cucumber (Gy14) v1	carcgyB0467
Carg00675	CmaCh07G005180	Cucurbita maxima (Rimu)	carcmaB0571
Carg00675	CmaCh03G007900	Cucurbita maxima (Rimu)	carcmaB0567
Carg00675	CmoCh03G008240	Cucurbita moschata (Rifu)	carcmoB0551
Carg00675	CmoCh07G005130	Cucurbita moschata (Rifu)	carcmoB0554
Carg00675	Lsi01G007300	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00675	Cp4.1LG19g09570	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00675	Cp4.1LG10g00970	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00675	MELO3C007786.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00675	CsaV3_6G045760	Cucumber (Chinese Long) v3	carcucB0442
Carg00675	Cla97C01G018540	Watermelon (97103) v2	carwmbB0426
Carg00675	Bhi03G000947	Wax gourd	carwgoB0491

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00675	Carg16021	Silver-seed gourd	carcarB426

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00675	Cucumber (Gy14) v2	carcgybB0418