CsaV3_6G045760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G045760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 27100404 .. 27102362 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAGAATACGTGTTCCATTAGAATTTTGAAATACTGATATATTCTATTATAATTCACACAACTATCCCAACTTTGTTGCCAAGAAACCCCTTTATTTGGGTATTGGCACAATCAAAGAAGACCCTTCAATGAAATACAATATACATGTGTATATTTTATAGATATACAATATAATACAATCAAATTTCTCCACAAAGGGTCCACCCATAGAAAAAGTAAAACCAAAATGCCCAAAAAACCAGACTAAGTCATCAAAGGTCACTTTTTTTTATTTCTTTTATACACTACACCGACTTGTCAGCCTTATCCACAATCATACCTCAATCTGAATATAAATTATGTCATCCTCCTAAAGGGGTCTCCTCAAAATCAACTAAGAGGGAGAGTTGAAAAATCACAGCCATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGAGTTCCTCTATTGGGTTTATATATATATATATATATTGTAAATGTTTCTCGTCTCTCTCTCTCTCTCTCTCAAATCTGTACATTTTTTTTTTCTTTTTTCCTTTTTTGGATTCTATTAGTTTTGAAATGCTTTTGAATTCGAGAGAAGAAGGGTGGGATTGTATTATGATTTGATGATTATTATAGGGTTTGAATTAACCATATGAATGTTGGGAAAAGATGGATGATTTGGTTTTCAAGAAATCATCGAGAGTTGGCCACTTAGTTGGTGCTTTTAAATATGTGATATGGTGGATGGATGAGGCTGTTCAGATCCCATATTGAAAAATCAATGAATTTAGTTGTTCATAGTTATGATTTGGGATCAATCCACCATCTAAGATGGTATCAATAATAATTTGATATTTATATTTGATATTAAATCGTAGACAAAATTTTAAATAAATTACCTTGTGAGCTTTTCAACTCGTAATTATAATTATGGTCGTGATATCTCTTTATGTAATTGATATATAGTTATGAAATTTTGGTGGCATTCAAAGAAAGTGAAAGTGAAATTAAGAGTGTAAATCAAATGATGGTAAAGGTTGTTATGGTGACACATTTGTGTCTTATCTGAGAGGCCATTTTGGTTTAATTTATTCAAAATTTCGTCAATTTAGGTTTGGTTTTTTTGTAAGAAGGAAAAGTTACTTTTTAAAGTACTTTTCAAATTCATTGTTTTCAAGTCCAAGCTGTTAAAAGTTAGGTTTTGAACATCCAAAGTCTATTTCTACATTAAATCTCATATAAAGTGTAAATTTGATCATCTAATGGGGATATATACGGATGTATATAAAAATAATTTACTAAGAAGTTCATCTAATGAATTATGAATTTTGTTTTGGTTTGGTTTTGTTTCCAAAGTTGTAGTTGTAGTTGATTCCAAGTTCTATCCATGGTTGCCATAATAACTATCCATATCACCATATTTAGATATATACTTTTTTGTGTTTGTCCAAAATCACTTTTTCTTGTTTGACATGAACTAAAATAAATATAAAATCGTTTAAAAAACGAATTAGGTTATTGGTAATTTTTGTTGGGTGATTTTCAATCAACCACTCCCAAAATGGATGTCTAATTCAGTTTTCTTTTTATAAAATATTGGAATAAAAGAATGTACATCATTAAATTATTTATAAAACAAACAATTATATACTAACATAACTATTTCTCAAATCAAAAAATATAATAACAATAATGATTCAAAATCTAAACAATAATGATTCAAAATCATTTCTAAA

mRNA sequence

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Protein sequence

MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA

Homology

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_011657992.1 (PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical protein Csa_6G501230 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.3e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_016899241.1 (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTK+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_023003555.1 (uncharacterized protein LOC111497122 [Cucurbita maxima])

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPR+ +E    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQ-EEKAAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            AE +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAERNEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_022962826.1 (uncharacterized protein LOC111463202 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPR+ Q+    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQK-AAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAQPNEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_022133051.1 (uncharacterized protein LOC111005739 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-15
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNP   Q   +QE+    +SGVSISATAT+ RMK+M+++ K + 
Sbjct: 1  MADIAILVAEEYERRMKNPGL-QAKQKQEIDGF-ASGVSISATATTGRMKQMLQLGKPN- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
               ++F WV EPKSQIGRAAS GFFSA
Sbjct: 61 -----ADFKWVSEPKSQIGRAASAGFFSA 81

[Close]

BLAST of CsaV3_6G045760 vs. TrEMBL
Match: tr|A0A0A0KK75|A0A0A0KK75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.1e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CsaV3_6G045760 vs. TrEMBL
Match: tr|A0A1S4DTC5|A0A1S4DTC5_CUCME (uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTK+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CsaV3_6G045760 vs. TrEMBL
Match: tr|A0A2P4L037|A0A2P4L037_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_59495 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR K+ R+            G   + I + A+S+ ++   ++  +  
Sbjct: 1  MADIAILVAEEYERRVKDARKAG-------GAKGEYEIDIVSYASSLALRVKTKIGNQ-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
             +M  F WV EPK+QIG AAS GFFSA
Sbjct: 61 ---KMELFKWVLEPKTQIGLAASCGFFSA 77

[Close]

BLAST of CsaV3_6G045760 vs. TrEMBL
Match: tr|A0A2C9UWH5|A0A2C9UWH5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G139700 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KN R+  +    E++ +      +S  A +++ K  + +A+++ 
Sbjct: 1  MADIAILVAEEYERRVKNSRKLSKASDSEMEVVN----WVSFLAQNVKDKVRVRVAEEN- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
              +    W+ EPKSQ+G AAS GFFSA
Sbjct: 61 ----IEIPKWILEPKSQVGVAASNGFFSA 80

[Close]

BLAST of CsaV3_6G045760 vs. TrEMBL
Match: tr|B9T6Q9|B9T6Q9_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0145330 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.7e-06
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIA+LVAEEYERR KN R+       +  E+  + VS  + AT     K M+      
Sbjct: 1  MADIAMLVAEEYERRVKNSRKAS----ADNGEVEINWVSCVSLATQSLKNKFMQ------ 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
           + E+    WV EPK+QIG AAS GFFSA
Sbjct: 61 ENIELIA-KWVLEPKTQIGLAASNGFFSA 78

The following BLAST results are available for this feature:

BLAST of CsaV3_6G045760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657992.1	6.3e-40	100.00	PREDICTED: uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hy...	[more]
XP_016899241.1	2.8e-32	88.76	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo]	[more]
XP_023003555.1	4.0e-18	69.66	uncharacterized protein LOC111497122 [Cucurbita maxima]	[more]
XP_022962826.1	2.0e-17	68.54	uncharacterized protein LOC111463202 [Cucurbita moschata]	[more]
XP_022133051.1	3.1e-15	61.80	uncharacterized protein LOC111005739 [Momordica charantia]	[more]

BLAST of CsaV3_6G045760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G045760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G045760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KK75\|A0A0A0KK75_CUCSA	4.1e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1	[more]
tr\|A0A1S4DTC5\|A0A1S4DTC5_CUCME	1.9e-32	88.76	uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=...	[more]
tr\|A0A2P4L037\|A0A2P4L037_QUESU	1.3e-06	43.82	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_59495 PE=4 SV=1	[more]
tr\|A0A2C9UWH5\|A0A2C9UWH5_MANES	1.8e-06	42.70	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G139700 PE=4 SV=...	[more]
tr\|B9T6Q9\|B9T6Q9_RICCO	8.7e-06	46.07	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0145330 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G045760.1	CsaV3_6G045760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	FAMILY NOT NAMED	coord: 1..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G045760	CSPI06G30540	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G045760	Cucsa.104690	Cucumber (Gy14) v1	cgycucB126
CsaV3_6G045760	CmaCh03G007900	Cucurbita maxima (Rimu)	cmacucB0809
CsaV3_6G045760	CmaCh07G005180	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G045760	CmoCh07G005130	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G045760	CmoCh03G008240	Cucurbita moschata (Rifu)	cmocucB0793
CsaV3_6G045760	Cp4.1LG10g00970	Cucurbita pepo (Zucchini)	cpecucB0092
CsaV3_6G045760	Cp4.1LG19g09570	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G045760	Carg00675	Silver-seed gourd	carcucB0442
CsaV3_6G045760	Carg16021	Silver-seed gourd	carcucB0797
CsaV3_6G045760	Cla014173	Watermelon (97103) v1	cucwmB526
CsaV3_6G045760	MELO3C007786	Melon (DHL92) v3.5.1	cucmeB517
CsaV3_6G045760	ClCG01G019080	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G045760	Lsi01G007300	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G045760	MELO3C007786.2	Melon (DHL92) v3.6.1	cucmedB505
CsaV3_6G045760	Cla97C01G018540	Watermelon (97103) v2	cucwmbB430
CsaV3_6G045760	Bhi03G000947	Wax gourd	cucwgoB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G045760	Cucumber (Gy14) v2	cgybcucB298