MELO3C012500 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012500
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb family transcription factor family protein
Locationchr1 : 17583646 .. 17585491 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGGTGGGATTGTGGCAACCTAATCGAATAAATTTTTTCCCCATCAACCCTTTGCTTCCTACTTATAAAGAGCACCCATTGCTCATTCTCTGGCACACACATTATCGTTTGTTTCCCACAGCAAACTTTTGAATCCCTCTTTCAAACCATTTTTTTTTTTTTACACTTCTTCAAAACAATTGAAGCTTCTCTTTATTTATCATCAATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGTAATGCATAAGCCTTTCGTGTTAGTTGGTGATTTAATACACGGTATTAGAGTATGACGGTTTGTTTCAAAAATGTTAGTTTTTGTTCACCTTATTTGATCATCTACTATGTTTTGAAGCCTATAAGTGAAACGAGAATGTTAATTAATATATCGATATATAGCTAAATTTAGTATAACTTCTAAGCGTGGGAGATTTTAGGTTTGATTATTTGTTTAGACGATGACAAAATTAAACGGTATATACATTAAAAAAAGATTAATGATGACAATATATATTAGACAAATGAGATTATTTCATTTCAAGATTAAACTATTCGACCTTATTAGAAGTATGACTAATATATCTTCTAAAATTGTAAGGCTTTTCCATTATTATAATGTGGAGATTTTATTCACTCTCAGTATTCTATCTTTGAATTCACGATATATTCTTGTGTTGGAACTCAATTTTTGTTTGGAATCTAATAATGATTTGGTTTTCATAGACTTTGATACTTATTTAAAAAAACAGTTCTTGGATTAAATCATTATCTTTATAGTAACTAATACAATATAGTATTATTGTATAAAGTCATCTTATATTTAATGAAATAAATGATTCGAAACGTATATTTTTGTTAATAATTAGTCCTGTTTTCAACTGATATAGTTGAATTCAAACAAAGTACCCAAATGATTTTTTATGAAAAAGAAAAGAAAAAAACAAAAACCCTCCCCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAAAAGCTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATAAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAATACAATATAATAACTCTTGATCTTGTAAGCTTTTTGAAAGGCCCCCTCTCTCTTCTTGTTCTTTGAAACTAAAGCTGCACCAATCCCTTAGCATTGCCTCTTCACAACCCCAATAAAAACAACATTTATATATATTAGGAATACTATAATAATAATATATCGTTTATAGAAATTAACATCTTGTTGTGTTGTTATTATTATCATTATGTTTTTGACTTTTTTTGATTCTTAGGATNNNNNNNNNNNNNNNNNNNNAAATTAACTATCTTGTTGTGTTGTTATTATTATCTATTATTGTTTTGTTACTTTTTTTTTTGTATTCTTAGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATT

mRNA sequence

AACGGTGGGATTGTGGCAACCTAATCGAATAAATTTTTTCCCCATCAACCCTTTGCTTCCTACTTATAAAGAGCACCCATTGCTCATTCTCTGGCACACACATTATCGTTTGTTTCCCACAGCAAACTTTTGAATCCCTCTTTCAAACCATTTTTTTTTTTTTACACTTCTTCAAAACAATTGAAGCTTCTCTTTATTTATCATCAATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATT

Coding sequence (CDS)

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGATGA

Protein sequence

MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG*
Homology
[Close]
BLAST of MELO3C012500 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-27
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGDGNQG 83
            IE+G VPFP YRTSG    G
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNG 85

[Close]
BLAST of MELO3C012500 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-27
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 3  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YR-TSGDGNQG 83
           IE+G VPFP Y+ T+G+ N+G
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRG 86

[Close]
BLAST of MELO3C012500 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-24
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 5  SSHGSGT-WTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+ K+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSG 78
          IESG+VPFP YRT+G
Sbjct: 63 IESGKVPFPNYRTTG 77

[Close]
BLAST of MELO3C012500 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFP-YRTSGDGN 81
          V  IESG+ P P YR++G+ +
Sbjct: 61 VNDIESGRYPHPNYRSNGNNH 81

[Close]
BLAST of MELO3C012500 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-22
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGDGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]
BLAST of MELO3C012500 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSG GNQG
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQG 82

[Close]
BLAST of MELO3C012500 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WT KQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTS 77
          VK IESG+VPFPYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]
BLAST of MELO3C012500 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-29
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WT KQNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIESGQVPFPYRTSGD 79
          K+IESGQVPFPYR++G+
Sbjct: 64 KYIESGQVPFPYRSNGN 80

[Close]
BLAST of MELO3C012500 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WT KQNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV+DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62 KFIESGQVPFP-YRTSGDGNQG 83
          K IESGQVPFP YRTS   ++G
Sbjct: 64 KHIESGQVPFPNYRTSAGNSRG 85

[Close]
BLAST of MELO3C012500 vs. TrEMBL
Match: W9QGR5_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 1 

Query: 4  MSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 63
          M+S    TWT KQNKAFEKALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LL+EDVK 
Sbjct: 1  MASSSMSTWTAKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLLEDVKH 60

Query: 64 IESGQVPFP-YRTSGDGNQG 83
          IESGQVPFP YRT+G  NQG
Sbjct: 61 IESGQVPFPYYRTTGGSNQG 80

[Close]
BLAST of MELO3C012500 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-28
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 3  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YR-TSGDGNQG 83
           IE+G VPFP Y+ T+G+ N+G
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRG 86

[Close]
BLAST of MELO3C012500 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-28
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGDGNQG 83
            IE+G VPFP YRTSG    G
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNG 85

[Close]
BLAST of MELO3C012500 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-23
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGDGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]
BLAST of MELO3C012500 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 104.4 bits (259), Expect = 3.5e-23
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]
BLAST of MELO3C012500 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 90.1 bits (222), Expect = 6.8e-19
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS SS  + +WT +++K FE ALA +D+DTPDRW  +A+AVGGK+ EEVKRHY LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGQVPFP-YRTS 77
          V  IESG+ P P YR +
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]
BLAST of MELO3C012500 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 8.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSGDGNQG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]
BLAST of MELO3C012500 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSG GNQG
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQG 82

[Close]
BLAST of MELO3C012500 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT KQNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTS 77
          VK IESG+VPFPYRTS
Sbjct: 61 VKHIESGKVPFPYRTS 76

[Close]
BLAST of MELO3C012500 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WT KQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTS 77
          VK IESG+VPFPYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]
BLAST of MELO3C012500 vs. NCBI nr
Match: gi|823257091|ref|XP_012461179.1| (PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii])

HSP 1 Score: 136.0 bits (341), Expect = 3.1e-29
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WT KQNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIESGQVPFPYRTSGD 79
          K+IESGQVPFPYR++G+
Sbjct: 64 KYIESGQVPFPYRSNGN 80

The following BLAST results are available for this feature:
BLAST of MELO3C012500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH2.2e-2771.95Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH2.2e-2773.17Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RAD_ANTMA1.7e-2470.67Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL3_ARATH4.3e-2364.20Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL5_ARATH4.8e-2264.63Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
BLAST of MELO3C012500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K348_CUCSA1.9e-3897.56Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A0A0K344_CUCSA1.6e-2981.58Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1[more]
A0A0D2W2J5_GOSRA2.1e-2981.82Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1[more]
A0A061E040_THECC1.1e-2879.27Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1[more]
W9QGR5_9ROSA1.4e-2881.25DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1[more]
BLAST of MELO3C012500 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21650.11.2e-2873.17 Homeodomain-like superfamily protein[more]
AT4G39250.11.2e-2871.95 RAD-like 1[more]
AT1G19510.12.7e-2364.63 RAD-like 5[more]
AT1G75250.13.5e-2368.42 RAD-like 6[more]
AT2G18328.16.8e-1958.44 RAD-like 4[more]
BLAST of MELO3C012500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092346|ref|XP_008447024.1|8.6e-40100.00PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|778725458|ref|XP_004151125.2|2.8e-3897.56PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|659092351|ref|XP_008447025.1|1.3e-3085.53PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|449466805|ref|XP_004151116.1|2.4e-2981.58PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|823257091|ref|XP_012461179.1|3.1e-2981.82PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017877Myb-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009630 gravitropism
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010114 response to red light
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000785 chromatin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003682 chromatin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012500T1MELO3C012500T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..54
score: 8.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
score: 5.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 10..62
score: 4.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 10..66
score: 1.64
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 4..58
score: 6
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 12..71
score: 1.2
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 12..71
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012500Cla015917Watermelon (97103) v1mewmB239
MELO3C012500ClCG02G004920Watermelon (Charleston Gray)mewcgB196
MELO3C012500Cla97C02G031880Watermelon (97103) v2mewmbB179
MELO3C012500Bhi05G001102Wax gourdmewgoB223
MELO3C012500CSPI07G11740Wild cucumber (PI 183967)cpimeB541
MELO3C012500Cucsa.240590Cucumber (Gy14) v1cgymeB408
MELO3C012500Cucsa.377630Cucumber (Gy14) v1cgymeB612
MELO3C012500CmaCh11G010940Cucurbita maxima (Rimu)cmameB093
MELO3C012500CmaCh19G006710Cucurbita maxima (Rimu)cmameB462
MELO3C012500CmoCh19G006820Cucurbita moschata (Rifu)cmomeB453
MELO3C012500CmoCh11G011190Cucurbita moschata (Rifu)cmomeB086
MELO3C012500Lsi11G011060Bottle gourd (USVL1VR-Ls)lsimeB096
MELO3C012500Cp4.1LG04g00900Cucurbita pepo (Zucchini)cpemeB605
MELO3C012500Cp4.1LG15g05490Cucurbita pepo (Zucchini)cpemeB224
MELO3C012500CsGy7G010930Cucumber (Gy14) v2cgybmeB471
MELO3C012500CsGy7G000010Cucumber (Gy14) v2cgybmeB469
MELO3C012500Carg24682Silver-seed gourdcarmeB0180
MELO3C012500CsaV3_7G023660Cucumber (Chinese Long) v3cucmeB551
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012500Watermelon (97103) v2mewmbB176
MELO3C012500Wax gourdmewgoB231
MELO3C012500Melon (DHL92) v3.5.1memeB042
MELO3C012500Cucurbita moschata (Rifu)cmomeB503
MELO3C012500Cucurbita moschata (Rifu)cmomeB552
MELO3C012500Wild cucumber (PI 183967)cpimeB102
MELO3C012500Cucumber (Chinese Long) v2cumeB102
MELO3C012500Watermelon (Charleston Gray)mewcgB190
MELO3C012500Watermelon (97103) v1mewmB252
MELO3C012500Cucurbita pepo (Zucchini)cpemeB272
MELO3C012500Bottle gourd (USVL1VR-Ls)lsimeB064
MELO3C012500Cucumber (Gy14) v2cgybmeB088
MELO3C012500Silver-seed gourdcarmeB0321
MELO3C012500Silver-seed gourdcarmeB0880
MELO3C012500Cucumber (Chinese Long) v3cucmeB106