MELO3C021693 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021693
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Venom nerve growth factor
Location	chr12 : 15648087 .. 15648827 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTTCACTTCCTCTTTCCCCATCTCCCATGGGAGCTAATCTCTGCACCATTAGACGTCCGGCGACCGCCGACGCCTCCGGTGACGGTAAGCCCCAAGTACCCTAATCTAATTTCGCAAATTATGTCCACTGCGATTCTCTTCTTTTTTTTTTTTTTTTTTAGAAAAATTAGGAAAATTAGGGCTCGGATTTGCAGGCTATGAAATCTGCGGGTGGAGAAGGCGACAATGGTGGAGAAGGGAGAGGAACGAAGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAAACTAAAGAGTTCATGTCTCTAGAGGAGTTGCTGTTGGCTTCTCCAGGAGCGCCGTCGGAGCGAGGGGAGGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAAAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGGTCTTCGGTTTGTGATGAGAGATCGGGTTTTGTTGGTGAATCTGTTGCAAAGGATGAGTATTCTTCTCATAGCGGTTTTCCGATTTGTAGAAGAGAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCGTCGCTGGAGGATGATGTGACAGCCGATGACCGGAATGTTGTTTCCTAGTTTAGTTTATAGTTTGGGACACTCTAAAACTTTGTAGTTAACTTTAAAAATGTTACTTTACATATAATACAAAAACCAAAATATTTACCA

mRNA sequence

CAAATTTTCACTTCCTCTTTCCCCATCTCCCATGGGAGCTAATCTCTGCACCATTAGACGTCCGGCGACCGCCGACGCCTCCGGTGACGGCTATGAAATCTGCGGGTGGAGAAGGCGACAATGGTGGAGAAGGGAGAGGAACGAAGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAAACTAAAGAGTTCATGTCTCTAGAGGAGTTGCTGTTGGCTTCTCCAGGAGCGCCGTCGGAGCGAGGGGAGGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAAAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGGTCTTCGGTTTGTGATGAGAGATCGGGTTTTGTTGGTGAATCTGTTGCAAAGGATGAGTATTCTTCTCATAGCGGTTTTCCGATTTGTAGAAGAGAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCGTCGCTGGAGGATGATGTGACAGCCGATGACCGGAATGTTGTTTCCTAGTTTAGTTTATAGTTTGGGACACTCTAAAACTTTGTAGTTAACTTTAAAAATGTTACTTTACATATAATACAAAAACCAAAATATTTACCA

Coding sequence (CDS)

ATGGGAGCTAATCTCTGCACCATTAGACGTCCGGCGACCGCCGACGCCTCCGGTGACGGCTATGAAATCTGCGGGTGGAGAAGGCGACAATGGTGGAGAAGGGAGAGGAACGAAGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAAACTAAAGAGTTCATGTCTCTAGAGGAGTTGCTGTTGGCTTCTCCAGGAGCGCCGTCGGAGCGAGGGGAGGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAAAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGGTCTTCGGTTTGTGATGAGAGATCGGGTTTTGTTGGTGAATCTGTTGCAAAGGATGAGTATTCTTCTCATAGCGGTTTTCCGATTTGTAGAAGAGAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCGTCGCTGGAGGATGATGTGACAGCCGATGACCGGAATGTTGTTTCCTAG

Protein sequence

MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS*

Homology

[Close]

BLAST of MELO3C021693 vs. TrEMBL
Match: A0A0A0LT52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-76
Identity = 149/174 (85.63%), Postives = 154/174 (88.51%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDG-----YEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 60
           MGANLCTIR P TADASGDG     YEICGWRRR WWRRERN+VKRELEASIEKK   EF
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK---EF 60

Query: 61  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 120
           MSLEELLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SV
Sbjct: 61  MSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSV 120

Query: 121 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 170
           A+DEYSSH GFPIC  +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 121 AEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of MELO3C021693 vs. TrEMBL
Match: B9HCF6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01050g PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 47/161 (29.19%), Postives = 83/161 (51.55%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEE 60
           M  +L + + P    + G G  I    + +  + +  + KR+     +K      ++L++
Sbjct: 37  MSKSLNSAQNPGAGHSHGCGSSIIELLKPECLKVKEFQSKRQGHQEQKKGTKVSKLTLQD 96

Query: 61  LLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEY 120
            LL SP   +E  +G  GE    +HG   ++VHP+R  E  S   +R   +     K++Y
Sbjct: 97  WLLTSPNLKAENLKG--GELGAVKHGS--KRVHPSRGRE--SFSKDRLLVLDHVADKEDY 156

Query: 121 SSHSGFPICRR-ESGKLKKKVSFRLPEVSDVIVIPSLEDDV 161
           S+ S   +  R +SGKL+K+VSF+LPE +D+I+  S +D +
Sbjct: 157 STVSSVSLLSRTQSGKLQKRVSFKLPEEADIILFYSPQDSL 191

[Close]

BLAST of MELO3C021693 vs. TrEMBL
Match: A0A0D2SYU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 37  NEVKRELEASIEKKETK--EFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHP 96
           N  KR  ++  E++ TK  + ++LE+ LLASPG P  +   N GE  V +   F ++VHP
Sbjct: 48  NGFKRPSQSLAEERVTKARKLLTLEDWLLASPGGPL-KDYFNGGELYVFKQ--FNKRVHP 107

Query: 97  ARI-LEWSSVCDERSGFVGESVAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVI 156
           +   +E     ++  GF  +  +  + S  S F   R +SGK KKKVSFRLPE +D++V 
Sbjct: 108 SSSSMEIEPRVNDHDGFSVDLSSSVDVSGCSSFS--RSQSGKSKKKVSFRLPEEADIMVF 164

[Close]

BLAST of MELO3C021693 vs. TrEMBL
Match: A0A0D2Q345_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G094000 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 1


Query: 23  ICGWRRRQWWRRERNEVK-RELEASIEKKETKEFMSLEELLLASPGAPSERGEGNDGEFN 82
           +C W+      +ER  ++ +E +   E  + K+  +LE+ L+ASPG     G  + GE++
Sbjct: 42  VCMWKNEA---KERQLLQVKEKQQQKEVNKAKKEPTLEDWLIASPGLQKINGTTSGGEYH 101

Query: 83  VSRHGGFKRKVHPARILE------WSSVCDERSGFVGESVAKDEYSSHSGFPICRRESGK 142
           V +H   KR V P+ + E       SS    R  F  E + K E S  S F + R  SGK
Sbjct: 102 VFKHYSSKR-VFPSCVGENENGSSSSSSSKARGSFSKERLLKGEESEVS-FSMTR--SGK 161

Query: 143 LKKKVSFRLPEVSDVIVIPSLEDDVTADD 165
            KK+VSFRLPE  D+ +  S   +  A +
Sbjct: 162 SKKRVSFRLPEEDDIFIFHSSSPEAAAPE 183

[Close]

BLAST of MELO3C021693 vs. NCBI nr
Match: gi|659118124|ref|XP_008458959.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo])

HSP 1 Score: 347.1 bits (889), Expect = 1.8e-92
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEE 60
           MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEE
Sbjct: 37  MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEE 96

Query: 61  LLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEY 120
           LLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEY
Sbjct: 97  LLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEY 156

Query: 121 SSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 170
           SSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS
Sbjct: 157 SSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

[Close]

BLAST of MELO3C021693 vs. NCBI nr
Match: gi|659118122|ref|XP_008458958.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.3e-90
Identity = 169/174 (97.13%), Postives = 169/174 (97.13%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDG-----YEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 60
           MGANLCTIRRPATADASGDG     YEICGWRRRQWWRRERNEVKRELEASIEKKETKEF
Sbjct: 37  MGANLCTIRRPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 96

Query: 61  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 120
           MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV
Sbjct: 97  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 156

Query: 121 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 170
           AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS
Sbjct: 157 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

[Close]

BLAST of MELO3C021693 vs. NCBI nr
Match: gi|778659827|ref|XP_011655111.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78
Identity = 149/169 (88.17%), Postives = 154/169 (91.12%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEE 60
           MGANLCTIR P TADASGDGYEICGWRRR WWRRERN+VKRELEASIEKK   EFMSLEE
Sbjct: 1   MGANLCTIRCPGTADASGDGYEICGWRRRHWWRRERNDVKRELEASIEKK---EFMSLEE 60

Query: 61  LLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEY 120
           LLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SVA+DEY
Sbjct: 61  LLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAEDEY 120

Query: 121 SSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 170
           SSH GFPIC  +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 121 SSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 166

[Close]

BLAST of MELO3C021693 vs. NCBI nr
Match: gi|778659824|ref|XP_011655106.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.4e-76
Identity = 149/174 (85.63%), Postives = 154/174 (88.51%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDG-----YEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 60
           MGANLCTIR P TADASGDG     YEICGWRRR WWRRERN+VKRELEASIEKK   EF
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK---EF 60

Query: 61  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 120
           MSLEELLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SV
Sbjct: 61  MSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSV 120

Query: 121 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 170
           A+DEYSSH GFPIC  +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 121 AEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of MELO3C021693 vs. NCBI nr
Match: gi|224086369|ref|XP_002307868.1| (hypothetical protein POPTR_0006s01050g [Populus trichocarpa])

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 47/161 (29.19%), Postives = 83/161 (51.55%), Query Frame = 1


Query: 1   MGANLCTIRRPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEFMSLEE 60
           M  +L + + P    + G G  I    + +  + +  + KR+     +K      ++L++
Sbjct: 37  MSKSLNSAQNPGAGHSHGCGSSIIELLKPECLKVKEFQSKRQGHQEQKKGTKVSKLTLQD 96

Query: 61  LLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEY 120
            LL SP   +E  +G  GE    +HG   ++VHP+R  E  S   +R   +     K++Y
Sbjct: 97  WLLTSPNLKAENLKG--GELGAVKHGS--KRVHPSRGRE--SFSKDRLLVLDHVADKEDY 156

Query: 121 SSHSGFPICRR-ESGKLKKKVSFRLPEVSDVIVIPSLEDDV 161
           S+ S   +  R +SGKL+K+VSF+LPE +D+I+  S +D +
Sbjct: 157 STVSSVSLLSRTQSGKLQKRVSFKLPEEADIILFYSPQDSL 191

The following BLAST results are available for this feature:

BLAST of MELO3C021693 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT52_CUCSA	1.6e-76	85.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1	[more]
B9HCF6_POPTR	2.8e-07	29.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01050g PE=4 SV=1	[more]
A0A0D2SYU1_GOSRA	6.2e-07	37.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1	[more]
A0A0D2Q345_GOSRA	1.1e-06	33.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G094000 PE=4 SV=1	[more]

BLAST of MELO3C021693 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118124\|ref\|XP_008458959.1\|	1.8e-92	100.00	PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo]	[more]
gi\|659118122\|ref\|XP_008458958.1\|	1.3e-90	97.13	PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo]	[more]
gi\|778659827\|ref\|XP_011655111.1\|	3.3e-78	88.17	PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus]	[more]
gi\|778659824\|ref\|XP_011655106.1\|	2.4e-76	85.63	PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus]	[more]
gi\|224086369\|ref\|XP_002307868.1\|	4.0e-07	29.19	hypothetical protein POPTR_0006s01050g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU60372	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021693T1	MELO3C021693T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU60372	MU60372	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 33..53 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C021693	Csa1G191690	Cucumber (Chinese Long) v2	cumeB020
MELO3C021693	Cla008992	Watermelon (97103) v1	mewmB170
MELO3C021693	ClCG01G010110	Watermelon (Charleston Gray)	mewcgB140
MELO3C021693	Cla97C01G010140	Watermelon (97103) v2	mewmbB141
MELO3C021693	Bhi08G000683	Wax gourd	mewgoB180
MELO3C021693	CSPI01G16090	Wild cucumber (PI 183967)	cpimeB018
MELO3C021693	CmaCh13G004020	Cucurbita maxima (Rimu)	cmameB192
MELO3C021693	Lsi02G010960	Bottle gourd (USVL1VR-Ls)	lsimeB180
MELO3C021693	Cp4.1LG20g06370	Cucurbita pepo (Zucchini)	cpemeB477
MELO3C021693	CsGy1G015730	Cucumber (Gy14) v2	cgybmeB017
MELO3C021693	Carg25130	Silver-seed gourd	carmeB1005
MELO3C021693	CsaV3_1G017310	Cucumber (Chinese Long) v3	cucmeB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021693	Cucurbita moschata (Rifu)	cmomeB179
MELO3C021693	Wild cucumber (PI 183967)	cpimeB451
MELO3C021693	Watermelon (Charleston Gray)	mewcgB136
MELO3C021693	Watermelon (97103) v1	mewmB165
MELO3C021693	Bottle gourd (USVL1VR-Ls)	lsimeB129
MELO3C021693	Cucumber (Gy14) v2	cgybmeB396
MELO3C021693	Watermelon (97103) v2	mewmbB139
MELO3C021693	Wax gourd	mewgoB164
MELO3C021693	Cucumber (Gy14) v1	cgymeB018